mRNA_E_fasciculatus_S2_contig9879.17877.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9879.17877.1
Unique NamemRNA_E_fasciculatus_S2_contig9879.17877.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.180e-8
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:   11 GCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRCG 118
            GC+  PSYGKD SKKAEFCSQHA++GM+NV  KRCG
Sbjct:  252 GCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRCG 287
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BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 9.590e-8
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 2 
Query:   11 GCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRCG 118
            GCT  PSYG DGSKKAEFCS+H++ GM NV +KRCG
Sbjct:   35 GCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRCG 70
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.380e-7
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:   11 GCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRC 115
            GCTK PSYG  GSKK EFC+QHA+KGM+N+R +RC
Sbjct:  113 GCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRC 147
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BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R1_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.440e-7
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 2 
Query:    5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMI 94
            HPGC K+PS+G DGSKKAEFCSQHAQ+GM+
Sbjct:  358 HPGCIKIPSFGNDGSKKAEFCSQHAQQGMV 387
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.120e-7
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:    5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRCG 118
            HPG TK PS GKDGSKKAE CSQH Q+GMIN+  K+ G
Sbjct:   86 HPGFTKEPSCGKDGSKKAEVCSQHVQRGMINLVSKKWG 123
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.300e-7
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 2 
Query:   11 GCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRCG 118
            GC++ PSYGKD +KKAEFC+QH Q+GM+NV  K CG
Sbjct:   25 GCSRRPSYGKDNTKKAEFCAQHRQQGMVNVAHKMCG 60
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.240e-7
Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 2 
Query:    5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMI 94
            HPGCTK PSYG DGSKKAE C+QHA +GM+
Sbjct:   11 HPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.930e-7
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 2 
Query:    5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMINV 100
            HPGC K PS+G DGS KAEFCSQHA KGM+NV
Sbjct:   39 HPGCIKRPSFGNDGSTKAEFCSQHAWKGMVNV 70
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 7.010e-7
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 2 
Query:    5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRC 115
            H  CTK P+YG  GSKK EFCSQHA+ GM+NV  KRC
Sbjct:    6 HANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 8.190e-7
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 2 
Query:    5 HPGCTKVPSYGKDGSKKAEFCSQHAQKGMINVRRKRC 115
            H  CTK P+YG  GSKK EFCSQHA+ GM+NV  KRC
Sbjct:   66 HENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9879.17877.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
EsV-1-73.180e-875.00n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-79.590e-872.22n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-71.380e-771.43n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized1.440e-780.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.120e-771.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.300e-766.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-74.240e-776.67n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized4.930e-778.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-77.010e-767.57n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized8.190e-767.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9879contigE_fasciculatus_S2_contig9879:5051..5693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.6
Seed ortholog evalue1e-09
Seed eggNOG ortholog2880.D8LD34
Model size643
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs29ZCP@1,2RXW0@2759
Cds size156
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842630.5569055-UTR-E_fasciculatus_S2_contig9879:5050..51381696842630.5569055-UTR-E_fasciculatus_S2_contig9879:5050..5138Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9879 5051..5138 +
1696842630.5888743-UTR-E_fasciculatus_S2_contig9879:5294..56931696842630.5888743-UTR-E_fasciculatus_S2_contig9879:5294..5693Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9879 5295..5693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842630.5766375-CDS-E_fasciculatus_S2_contig9879:5138..52941696842630.5766375-CDS-E_fasciculatus_S2_contig9879:5138..5294Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9879 5139..5294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9879.17877.1prot_E_fasciculatus_S2_contig9879.17877.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9879 5139..5294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9879.17877.1

>prot_E_fasciculatus_S2_contig9879.17877.1 ID=prot_E_fasciculatus_S2_contig9879.17877.1|Name=mRNA_E_fasciculatus_S2_contig9879.17877.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=52bp
MINVRRKRCGHPGCTKRPSYGNPGSKKAEFCTQHAQHDMVNVRREFYQES
I*
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mRNA from alignment at E_fasciculatus_S2_contig9879:5051..5693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9879.17877.1 ID=mRNA_E_fasciculatus_S2_contig9879.17877.1|Name=mRNA_E_fasciculatus_S2_contig9879.17877.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=643bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9879:5051..5693+ (Ectocarpus fasciculatus EfasUO2)
CTGCCATCCAGGGTGCACGAAGGTGCCGTCGTATGGAAAGGACGGCAGCA
AGAAGGCTGAGTTCTGCTCTCAACACGCGCAAAAGGGCATGATCAATGTT
CGTAGGAAGAGGTGCGGCCACCCAGGTTGCACGAAGAGGCCGTCTTATGG
AAACCCCGGCAGCAAGAAGGCGGAGTTCTGTACCCAGCACGCGCAACACG
ACATGGTCAACGTGCGACGTGAATTTTACCAGGAATCGATTTAAGTGAAG
CATTGCCGCATCGGTGGTATCGTAAACGTCGTTGTTTGGTGGTTCTTCAC
TACGGGCGACGCTGGCACGTATGCCCTAGATGCATGGCTCACTTCTGGTT
AGGGATTGTTCACGAACGTTGCCATAAGTGTGAACGGCCAGTTATGATTT
TACCAATATAGCCTTTGACGTACCCGGCGAATATGTGCATCCAGCATGGC
GGTATACTTCGTTTTGCGTTTCGTCGCCTGGTACACGCTGTGCATGGAGA
CGTAAAGGGTGCGGGTTTCGTCGCCTGGTACACGCTGTGCATGGAGAGGT
AAGGGGTGCATAGGGTGTTCCCCAATTGCAAATTGGGGTTTCAGTCCAGC
ACAATCCCGAAAAAAGCGATATAGAAATCTTGTCCGAAATTTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9879:5051..5693+

>mRNA_E_fasciculatus_S2_contig9879.17877.1 ID=mRNA_E_fasciculatus_S2_contig9879.17877.1|Name=mRNA_E_fasciculatus_S2_contig9879.17877.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=156bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9879:5051..5693+ (Ectocarpus fasciculatus EfasUO2)
ATGATCAATGTTCGTAGGAAGAGGTGCGGCCACCCAGGTTGCACGAAGAG
GCCGTCTTATGGAAACCCCGGCAGCAAGAAGGCGGAGTTCTGTACCCAGC
ACGCGCAACACGACATGGTCAACGTGCGACGTGAATTTTACCAGGAATCG
ATTTAA
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