mRNA_E_fasciculatus_S2_contig9868.17866.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9868.17866.1
Unique NamemRNA_E_fasciculatus_S2_contig9868.17866.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9868.17866.1 vs.
Match: PTIF2, (plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 2.160e-66
Identity = 123/128 (96.09%), Postives = 124/128 (96.88%), Query Frame = 1 
Query:    7 GGGLDYASPPTEKRATFKEDKKKIKGYEGKNVPDKASQSVLRGRKDRLQAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKVVEPSTKPKAVASTPVERIQPTGGRQAQAQALKAAGRPI 390
            GGGLDYA PPTEKR TFKEDKKK+KGYE KNVPDKASQSVLRGRKDRLQAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKV EPSTKPKAVASTPVERIQPTGGRQAQAQALKAAGRPI
Sbjct:  266 GGGLDYA-PPTEKRTTFKEDKKKVKGYESKNVPDKASQSVLRGRKDRLQAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKVAEPSTKPKAVASTPVERIQPTGGRQAQAQALKAAGRPI 392
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9868.17866.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
PTIF2,2.160e-6696.09plastid translation intiation factor 2 n=2 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9868contigE_fasciculatus_S2_contig9868:130..2686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score228.4
Seed ortholog evalue2e-57
Seed eggNOG ortholog2880.D7FJE9
Model size407
KEGG koko:K02519
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons4
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0532@1,KOG1145@2759
Cds size405
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842629.5978367-CDS-E_fasciculatus_S2_contig9868:129..1761696842629.5978367-CDS-E_fasciculatus_S2_contig9868:129..176Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9868 130..176 +
1696842629.611799-CDS-E_fasciculatus_S2_contig9868:1734..18071696842629.611799-CDS-E_fasciculatus_S2_contig9868:1734..1807Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9868 1735..1807 +
1696842629.6220703-CDS-E_fasciculatus_S2_contig9868:2071..21751696842629.6220703-CDS-E_fasciculatus_S2_contig9868:2071..2175Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9868 2072..2175 +
1696842629.6320262-CDS-E_fasciculatus_S2_contig9868:2504..26851696842629.6320262-CDS-E_fasciculatus_S2_contig9868:2504..2685Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9868 2505..2685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9868.17866.1prot_E_fasciculatus_S2_contig9868.17866.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9868 130..2685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9868.17866.1

>prot_E_fasciculatus_S2_contig9868.17866.1 ID=prot_E_fasciculatus_S2_contig9868.17866.1|Name=mRNA_E_fasciculatus_S2_contig9868.17866.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp
GNGGGLDYASPPTEKRATFKEDKKKIKGYEGKNVPDKASQSVLRGRKDRL
QAESLDEELYDDDGADLSTDDDLFGAATAAATAMLGEAAEKVVEPSTKPK
AVASTPVERIQPTGGRQAQAQALKAAGRPIPGRGR
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mRNA from alignment at E_fasciculatus_S2_contig9868:130..2686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9868.17866.1 ID=mRNA_E_fasciculatus_S2_contig9868.17866.1|Name=mRNA_E_fasciculatus_S2_contig9868.17866.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2557bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9868:130..2686+ (Ectocarpus fasciculatus EfasUO2)
GGGAACGGGGGCGGCCTCGACTATGCTTCTCCCCCCACGGAGAAACGGTG
AGGATCCGGTCGATTTAGGCGGGCGGGCACATGGTTGGTGAAGTACTGCA
GTAGGAAGGGATATGCCGGCGCCAAGAGGCTCAAGAAGAACGAGAGAGAT
TGCCGTGATCGAGAGGCGAACATGTGGAACTCTTACTGTAGGGGAGTCGC
GCGAGGTGGGGGGGGGGGCTTGCCGCTCTTGGCGCGATCCTGTGTTTGAG
CTTGACCGCTACTTGCTGTGAGCCAATCGCTTCGTTTCGTTCTTGTGGTT
GTGATTGGCACGCCCATGCGGAACCAAGTAGTGCGTCCTGTTGTGCTCTA
CCGTTTGGTCCGGTGACGGGAGGGAGGGAAAGGAGGCACGCTTGTTGATA
TGTAACTCGGGTTTATGACATGGGCGGAACTCGCGCTAGTGCTGGGGTGT
ATGAGGTACGCCTTGCACGATATAGGACATGTCGTGCCTATGGAAATGGT
CGGTATTACGGCAGGGTTAATTACGATTTGGTGGCCTTACGCCTAATGGT
ATCGAGCAGCATGCTAAAGGGTACCTAGCACTGCGTGTGGACAAGGCTTT
TCGGCGAGAACAACATTGCGCGTTTAGTAGTAGGAGTTCGTGTAGTGTAC
TTCGGCTTGGGTCACTTTTGTTGGAGGTTATCGTTTGTTGTTGGCACTCC
AACCCGAATCCCTCTACTTGACGCACAATGTTATTCTCGGCTGTTGTCTG
TTCTTTTTTGTTTTTGGTATAGTTGTAATTTCCGGGTATGACCCGCGGGT
GCCGAACGCTTACATATCGTCGCGCTCTTGTTTTTTTCCCTTCTGCACGC
ATGTCGACCGTGTGCTTTCGTGCGACTTACGTTTTCCTGACTTTGCGTTG
CACGCGTCAGCCTGTTGGTTGGTGTGGATGATGTTTGCTCTATGGACGAC
GGTGGCGTTATTCTCACGTGTAAGCTCTATTGTTGCCGCGTCGAAGTTCT
TTGTATTGTGTGTTCCTATCAAACTTGTTATATTTGATCTTGAAACAGCC
GAACATGGTTATTTTCGTTCTATACGAGCATGTTTATTTCGCATCCCCCC
CAGTCGCAGCCCCCAGTCGCAGCCTGCACCCTGTGGTCTTGCCTTCCTAC
CTATATGGGGGCACGCAGACGGAATGTTTGAATGTTTCCTCCGCGATTCG
TACCTTGCCTTTCACTTGCAGTTTCGCCTTTTGTCTCGTATGACGTAGAC
CACGCACCGGGTTTCGGTGCATGGACGTCTTTCTCTCGGTTTTGTGCGCG
CGAAAGGCGTATGAGATGAGCAGGCTGCACTTTTGCGGAGGCCGTTTTCT
GTCGTTGTGTCGCCTTTCTCTCACCTAGAGTTGTTATTTACTTCGAAGTA
GATGGTTGTGGTTTACGTTCGAAAGCCGATCCCTGCGTAGGAAAACGTTG
ACTCTTCCGCCGTAAAGCAAGAGAGTCGGAGGATTGCGAGCCTCCGATGC
TCAATAGGTCGCTTGTTGAATGTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTACCAACCACGTGTATCTGTTGTCTGTTGTCTGTTTGTGTCG
CAAAGGGCGACTTTCAAGGAGGACAAGAAGAAGATCAAAGGCTACGAGGG
CAAGAACGTGCCGGACAAGGCATCTCAGGTCAGAGAGTGCTGTAGTGCTG
CCCTAGCACCAAACGTGTTTAATAAAACGCTTCGTTTGTGACTGTTTTTT
CTCGTAGGTGCCGTGGCGTAGTGCTGTTGGGGGTGATGATCATGTTGGGC
ATCATTTTCAAAACCTCCGCACGTTGGTCCACTCAGGGTCATGTTTTTTG
CATGCTCAAGCCCCCACTCCACTTTTATTACGTTCTCGCCTCGCATGTCA
TGGCTTGACCCCGTGTCTTTCATCTTGTCATGTTTATTTCAGTCGGTTCT
GAGGGGGCGCAAGGATAGGCTACAGGCGGAATCCTTGGACGAAGAGCTGT
ACGATGATGACGGTGCTGATCTCAGCACTGACGATGATCTGTTCGGGTAA
GCTCACCGCTGTCGGTACTTTTTTGGGTACTTTGTGTGCTGCTGCTGTCG
GTGTGGTTGTTGGTGTTGAGTGTTGCTCCGTCAGGTGATGGTGTTGCTGC
TTAAGTTCTGCAAGTGAAAGTGAGTGACTTGGATGATCGAGAGAGAGCTA
GCTCCCTTTTGTGATGCCGTTGGTTACCTTCGCTCTTTCTTTGTTGCGGC
GCTGGGACGCTGGGACTCTCGTTCCTTGTTCCCCGTCCACCCTAACTCTC
CGCATTTATCTCGCTGTGCTGTCGCTGCCGGCTTTGTACTCGCCGCCTTC
ATCACAACACCCCACCACCAACCAGTGCGGCCACCGCTGCCGCCACAGCG
ATGCTGGGCGAGGCCGCCGAGAAGGTAGTAGAGCCTAGCACCAAGCCCAA
GGCAGTCGCCTCGACCCCCGTGGAGCGGATCCAGCCCACAGGGGGCCGCC
AGGCTCAGGCACAGGCGCTCAAGGCGGCCGGGAGGCCGATCCCCGGGCGG
GGTCGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9868:130..2686+

>mRNA_E_fasciculatus_S2_contig9868.17866.1 ID=mRNA_E_fasciculatus_S2_contig9868.17866.1|Name=mRNA_E_fasciculatus_S2_contig9868.17866.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9868:130..2686+ (Ectocarpus fasciculatus EfasUO2)
GGGAACGGGGGCGGCCTCGACTATGCTTCTCCCCCCACGGAGAAACGGGC
GACTTTCAAGGAGGACAAGAAGAAGATCAAAGGCTACGAGGGCAAGAACG
TGCCGGACAAGGCATCTCAGTCGGTTCTGAGGGGGCGCAAGGATAGGCTA
CAGGCGGAATCCTTGGACGAAGAGCTGTACGATGATGACGGTGCTGATCT
CAGCACTGACGATGATCTGTTCGGTGCGGCCACCGCTGCCGCCACAGCGA
TGCTGGGCGAGGCCGCCGAGAAGGTAGTAGAGCCTAGCACCAAGCCCAAG
GCAGTCGCCTCGACCCCCGTGGAGCGGATCCAGCCCACAGGGGGCCGCCA
GGCTCAGGCACAGGCGCTCAAGGCGGCCGGGAGGCCGATCCCCGGGCGGG
GTCGC
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