mRNA_E_fasciculatus_S2_contig9864.17865.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9864.17865.1
Unique NamemRNA_E_fasciculatus_S2_contig9864.17865.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP27_9PHAE)

HSP 1 Score: 533 bits (1372), Expect = 8.470e-176
Identity = 253/262 (96.56%), Postives = 259/262 (98.85%), Query Frame = 1
Query:    1 FKVVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESLIQDMMTG 786
            FKVV+DSKGGEPYDSVEYSR+FF+LFQGAIYLHQARQYLVTRLDLGAHVAHT+PVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVV TVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVG TARRRVEEEGLDLEGG+HAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHR VLSKALELVEGCPCP+GCLACIHDHGCTGYNAIIDKRAAVVILESLIQDMMTG
Sbjct: 1112 FKVVDDSKGGEPYDSVEYSRSFFSLFQGAIYLHQARQYLVTRLDLGAHVAHTIPVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVCTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGETARRRVEEEGLDLEGGIHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRGVLSKALELVEGCPCPEGCLACIHDHGCTGYNAIIDKRAAVVILESLIQDMMTG 1373          
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: DEAD/DEAH (box helicase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG5_ECTSI)

HSP 1 Score: 488 bits (1255), Expect = 1.290e-163
Identity = 229/240 (95.42%), Postives = 235/240 (97.92%), Query Frame = 1
Query:    4 KVVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNA 723
            +VV+DSKGGEPYDSVEYSR+FF+LFQGAIYLHQARQYLVTRLDLGAHVAHT PVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVV TVYGFVKKQMGTGR LERGECSLPPLQYATRAFWLDVG TARRRVEEEGLDLEGG+HAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFD+RPGGVGVSDAMFGCHR VLSKALELVEGCPCPDGCLACIHDHGCTGYNA
Sbjct:  671 RVVDDSKGGEPYDSVEYSRSFFSLFQGAIYLHQARQYLVTRLDLGAHVAHTTPVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVCTVYGFVKKQMGTGRVLERGECSLPPLQYATRAFWLDVGETARRRVEEEGLDLEGGIHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDRRPGGVGVSDAMFGCHRGVLSKALELVEGCPCPDGCLACIHDHGCTGYNA 910          
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AHT8_9STRA)

HSP 1 Score: 234 bits (597), Expect = 2.300e-71
Identity = 123/279 (44.09%), Postives = 167/279 (59.86%), Query Frame = 1
Query:   28 GEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSED-----KHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLD------------------------------LEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGC-HRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVIL 756
            G   DS+ YSRAFF LF+GAIYLHQ RQ+LVT+LDL  + A   PV+VNY+T++RN+ +VNV K LE S          +TG V+VV+ V+G+ K    TG+ L+ G  SLPPL+Y TRA W+DV    +R+V E  +                               +   VHA+ H L+A+ PLF+LCD  D+D EH   +  RP+P R++V+DKRPGGVG+++A++ C   AVLSKA +LV  C C  GC  CIHD  C+G N  + K  A++IL
Sbjct:   72 GVSIDSIGYSRAFFELFEGAIYLHQGRQFLVTKLDLQQNQASVRPVRVNYFTSSRNHTDVNVIKVLESSLSGWSGCSEMNTGSVSVVTRVWGWRKHWQATGKILDMGHFSLPPLEYETRAVWIDVPEALQRKVMELCVSSSPTCPKSRDDISPQKCDQDVPPKIPPSQAVRSAVHALNHVLVAIAPLFILCDKDDIDTEHVYVYQQRPRPARLIVYDKRPGGVGIAEALYCCGSHAVLSKAYDLVTSCSCAYGCPGCIHDPRCSGQNESLFKEGAILIL 350          
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKF1_9STRA)

HSP 1 Score: 226 bits (575), Expect = 3.030e-65
Identity = 116/265 (43.77%), Postives = 161/265 (60.75%), Query Frame = 1
Query:    1 FKVVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEV-------SEDKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHAR---PHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESL 765
            FKV +++   +  D+VEYSRAFF L+ GAIYLHQARQYLVT LDL  HVA   PV+V Y+T ARN  +V  T R+E        S     H G V V  TVY + K+ M + +  E  EC LPPL+Y +RA+W D+    ++ + E G D +  +HA  HA++++ PL LLCD +D++  H      + +RP P+RIL+FDK+ GG G + A+F   + VL +A  L+E C C +GC +CIH H C  +N  +DK   V +L  L
Sbjct:  413 FKVQDETDNLKVIDTVEYSRAFFELYTGAIYLHQARQYLVTHLDLKTHVAKVRPVRVPYHTMARNYTDVITTNRIESLVAGGAGSNAGLVHLGAVIVKRTVYSWQKRYMNSDKCFESHECRLPPLEYRSRAWWADIPLDLKQELVEHGHDFQECIHAAAHAIVSITPLELLCDPSDIETLHGYISVTNSTRPSPRRILIFDKQAGGNGTASAIFRHTKEVLRRARALMEACACENGCPSCIHHHMCYEFNEGMDKVGGVRLLRGL 677          
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSL9_9STRA)

HSP 1 Score: 226 bits (576), Expect = 3.220e-64
Identity = 114/249 (45.78%), Postives = 164/249 (65.86%), Query Frame = 1
Query:   40 DSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKV-NYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPC--PDGCLACIHDHGCTGYNAIIDKRAAVVILESLIQDM 777
            D+V Y+RAF+ LF+GAIYLHQAR +LVT+LDL A  A    ++   Y TA+RN+ +V+  + LE        TG V+VVS V+G+ K    T + LE  E SLPPL++ +R  W+DV ++A  ++    LD   GVHA  HALL V PLF++ DAAD+  EH  P   RP+P R++++D RPGG+G +DA+F    A L +A  L+  CPC    GC AC+H H C+GYNA +D+RAA +I+++++Q++
Sbjct:  756 DTVPYARAFYELFEGAIYLHQARPHLVTKLDLQARYASVKRLRTCGYITASRNHTDVDPVRVLEARGP--LKTGVVHVVSKVWGYRKVCRQTFKVLELKEFSLPPLEFDSRGTWVDVPSSAIEKMASLNLDARSGVHAANHALLIVAPLFVVADAADISTEHVYPRQHRPRPLRLILYDARPGGLGAADALFRRFHAALGQARRLLSECPCRFSSGCPACLHVHTCSGYNANLDRRAARIIVDAVLQEL 1002          
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LIE2_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.430e-61
Identity = 102/257 (39.69%), Postives = 151/257 (58.75%), Query Frame = 1
Query:   40 DSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSEDKH---------------AHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESL 765
            D++ YSRAFF ++ GAIY+HQ+  Y+V++LDL    AH     VNY+T+ R+  ++ V KR E S   H               AH G V VV +VYGF K      +  E  E SLPPL++ T A W+D+    R ++EEEGLD +GG+HA  H +  +VP  ++CD+  +D EH   +  RP+P R+L++D  PGGVG+ +A+F     +L ++  L++ C C  GC+ CI D  C  +N ++DK AA  IL+ +
Sbjct:  208 DTIPYSRAFFEIYPGAIYMHQSVTYIVSKLDLVNFTAHAHQTSVNYFTSPRDITDIEVLKRFE-SYSGHLINNESLKTTPLSLSAHLGQVKVVCSVYGFRKMWFKNNKVFEMHEFSLPPLEFETVALWIDLPPDIRDKIEEEGLDWKGGMHAASHVIARLVPTMVICDSKSIDTEHINSYSQRPRPPRLLIYDTTPGGVGIVEAIFHQLEELLKRSKNLIDSCKCTVGCIRCILDLKCKDHNMVLDKAAAAKILDMI 463          
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ71_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.130e-60
Identity = 107/258 (41.47%), Postives = 160/258 (62.02%), Query Frame = 1
Query:   10 VNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVK-VNYYTAARNNVEVNVTKRLEVSE-DKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPC--PDGCLACIHDHGCTGYNAIIDKRAAVVILESLIQ 771
            V+ S      D + YSRAF+ L+QGAIY+HQA+ +L+T+LD+  ++A   P+K   YYT+A+N+ + +    L++        TG V V S V+G+ K    TG+ L   E SLPPL++ TR  WLD+   A   + +  LDL  G+HA  HA+L +VPLF++CD  DV+ EH      RP+P RI++FD RPGG+GV+ A+F    AV+S+AL L+  CPC    GC +C+    CT +N  +D RAA++I  ++++
Sbjct:  613 VHSSINNVKLDEIPYSRAFYELYQGAIYMHQAKPFLITKLDIKKYIAIAQPLKHCAYYTSAQNHTDADPIDILDIWPLGNICRTGLVRVHSHVWGYRKICKHTGKFLSSHEFSLPPLEFITRGIWLDLPQEAIHEISQANLDLHHGIHACTHAILNIVPLFVVCDNTDVNAEHVYISQKRPRPARIIIFDTRPGGIGVAHAIFRRIYAVISEALRLITECPCHAQSGCPSCLFSASCTAHNLALDSRAAIIIFRAILK 870          
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: DUF1998 (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7X3_9ARCH)

HSP 1 Score: 197 bits (501), Expect = 5.580e-58
Identity = 98/260 (37.69%), Postives = 157/260 (60.38%), Query Frame = 1
Query:    1 FKVVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSED---KHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRA-VLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESLI 768
            F VV +  G E  D + YSRAF+ LF+ AIY+H+ +QY+V +LD+  ++A    V V YYT+AR+   VNV K L++  D      + G V +V TVYG+ K  + +    E GEC LPPL+Y T+AFW+ + T+ + ++E+ G ++   VH+  HA++A++P  L CD  D+  EH    ++ P   RIL++DK  GG+G++  ++  H   +L  A +++  C C +GC  C++DH C  +N    K+ A+ +L+ LI
Sbjct:   17 FAVVVEGTG-EVLDGIGYSRAFYELFEQAIYMHRGKQYMVVKLDMVNYIARVKLVNVKYYTSARDRTAVNVIKVLQLDGDDGDSMFNYGIVQIVQTVYGYSKHSLYSHFVFEHGECQLPPLEYETQAFWIYIPTSIKYKLEDLGHNVTVAVHSANHAIVALLPSILACDPGDICTEHID-SNAHPSYNRILIYDKPMGGIGLAKNLYLQHGVEILWAARDMLTKCECANGCPVCVYDHRCQKHNGDCSKQGAIALLQFLI 274          
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EQ68_CAFRO)

HSP 1 Score: 202 bits (513), Expect = 4.110e-57
Identity = 95/254 (37.40%), Postives = 143/254 (56.30%), Query Frame = 1
Query:    7 VVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESLI 768
            VV+        D +EYS A +  ++GAIY++Q   Y + +LDLG  VA        YYT  R+  +VNV  R     D   H G +  +  V+G+ K    +G+ L+  +  +PP ++ T A W DV    +  ++  G+D  GG HA  HAL+A +P F+LCD +D+  + A P   R +P R++V+D R GG+GV+ A F   R +  +AL ++E CPC  GC +C HD  C GYN +IDK AA++IL  ++
Sbjct:  345 VVDAGDRNRLIDDIEYSSALWEAYEGAIYMNQGVTYKIVKLDLGRGVASARVTSEQYYTDTRDFTDVNVLSRTRTGADGRTHFGRIQCIRRVFGYRKIWKKSGKLLDMCDVDMPPHEFVTHAMWADVPLAVKLYLDAHGMDFIGGCHAASHALVAALPQFVLCDRSDLGMDCANPLAERARPLRVMVYDNRMGGIGVAAAAFQRARRMFRQALAILESCPCVPGCPSCCHDPACRGYNYVIDKPAAIIILRGVL 598          
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Uncharacterized (protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EC89_VITBC)

HSP 1 Score: 199 bits (506), Expect = 1.590e-54
Identity = 103/255 (40.39%), Postives = 148/255 (58.04%), Query Frame = 1
Query:   25 GGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNV--TKRLEVSEDK---HAHTGCVNVVSTVYGFVKKQMGTGRTLERGE-CSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESLIQ 771
            G E  D +EY  AFF +  GA+YL++ ++YLV+ LDL   VA   P KV YYT  R++ +V+V  T + + S D      + G + V   V+G+ K    + +  +      LPP+ Y T  FW D+    R ++++ GLD+ GG+H   HALLAVVPLF+LCD  D+ CE   P   R +P R++VFD  PGGVG+S   F   R +   AL+LV  C C  GC AC+    C  YNA+I K AA+V+L ++++
Sbjct: 1312 GQEVIDEIEYHEAFFMVHPGAVYLNRGKEYLVSHLDLHHLVARVQPAKVPYYTRTRDHTDVDVLTTNQQDDSIDGIEVSTYRGRLQVCLKVWGYRKFWRSSSQPFDSTVGLGLPPIAYQTDGFWFDIERPLRDKLDKRGLDIRGGIHGAEHALLAVVPLFVLCDRTDISCECPNPWDERLRPLRLVVFDSTPGGVGISMRAFQQARGIARAALQLVNDCTCDQGCPACVCHPNCGEYNAVISKPAALVVLRAMVR 1566          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized8.470e-17696.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
DEAD/DEAH1.290e-16395.42box helicase domain-containing protein n=1 Tax=Ect... [more]
Hypothetical2.300e-7144.09protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical3.030e-6543.77protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical3.220e-6445.78protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical1.430e-6139.69protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]
Hypothetical1.130e-6041.47protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
DUF19985.580e-5837.69domain-containing protein n=1 Tax=archaeon TaxID=1... [more]
Uncharacterized4.110e-5737.40protein n=1 Tax=Cafeteria roenbergensis TaxID=3365... [more]
Uncharacterized1.590e-5440.39protein n=3 Tax=Vitrella brassicaformis TaxID=1169... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9864contigE_fasciculatus_S2_contig9864:253..4730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score486.5
Seed ortholog evalue7.8e-135
Seed eggNOG ortholog2880.D8LLG5
Model size788
KEGG koko:K06877
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000217,GO:0000405,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0030554,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034641,GO:0034644,GO:0035639,GO:0035861,GO:0036094,GO:0036297,GO:0042623,GO:0043138,GO:0043140,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0070914,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0097159,GO:0097367,GO:0104004,GO:0140097,GO:0140098,GO:1901255,GO:1901265,GO:1901360,GO:1901363
Exons6
EggNOG free text desc.nucleotide-excision repair involved in interstrand cross-link repair
EggNOG OGsCOG1205@1,KOG4150@2759
Ec32 ortholog descriptionHelicase, C-terminal
Ec32 orthologEc-27_002550.1
Cds size786
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9864.17865.1prot_E_fasciculatus_S2_contig9864.17865.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9864 253..4729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842629.493088-CDS-E_fasciculatus_S2_contig9864:252..3541696842629.493088-CDS-E_fasciculatus_S2_contig9864:252..354Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9864 253..354 +
1696842629.5054638-CDS-E_fasciculatus_S2_contig9864:703..8551696842629.5054638-CDS-E_fasciculatus_S2_contig9864:703..855Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9864 704..855 +
1696842629.5158832-CDS-E_fasciculatus_S2_contig9864:2123..23041696842629.5158832-CDS-E_fasciculatus_S2_contig9864:2123..2304Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9864 2124..2304 +
1696842629.525575-CDS-E_fasciculatus_S2_contig9864:2952..31401696842629.525575-CDS-E_fasciculatus_S2_contig9864:2952..3140Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9864 2953..3140 +
1696842629.5368342-CDS-E_fasciculatus_S2_contig9864:3981..40811696842629.5368342-CDS-E_fasciculatus_S2_contig9864:3981..4081Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9864 3982..4081 +
1696842629.5549512-CDS-E_fasciculatus_S2_contig9864:4666..47291696842629.5549512-CDS-E_fasciculatus_S2_contig9864:4666..4729Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9864 4667..4729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9864.17865.1

>prot_E_fasciculatus_S2_contig9864.17865.1 ID=prot_E_fasciculatus_S2_contig9864.17865.1|Name=mRNA_E_fasciculatus_S2_contig9864.17865.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=262bp
FKVVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVA
HTVPVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVSTVYGFVKK
QMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHA
VGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVS
DAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVV
ILESLIQDMMTG
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mRNA from alignment at E_fasciculatus_S2_contig9864:253..4730+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9864.17865.1 ID=mRNA_E_fasciculatus_S2_contig9864.17865.1|Name=mRNA_E_fasciculatus_S2_contig9864.17865.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4478bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9864:253..4730+ (Ectocarpus fasciculatus EfasUO2)
TTCAAGGTGGTAAACGACTCGAAGGGGGGCGAGCCGTACGACAGCGTGGA GTACAGCAGGGCGTTTTTCACGCTGTTCCAGGGGGCCATCTACCTGCACC AGGTGCCTTAAGAGGGTGCAAACGGGATAGATGATCCTTCGGGCTCGGCG CAAGGCAGCATGTCGTTGGGATGTGTGCTAACAGCTCGTATGCATTGTGT GTTGATATCATTGGTGTTGTTTATTGCACATGACTGATGGCGTTGATTGA AAGGCCTTCCGTGTGATGTCACATGACATAACACTACTGTAACAGTTAAA ACGGTTATTGTAATGGTATCTGACAAGAAACATCTGCACATGTATATGTA TATACAACGCGATGGTAACGGTGAAGACGACGACGAAGACGACGACGATG ATGAAAAATAGCAATAAACCGCACGAATATTTAACAAAAAAATACTTGAA GGCGCGGCAGTACCTGGTGACGAGGCTGGATCTCGGGGCGCACGTGGCGC ACACGGTCCCCGTCAAGGTGAACTACTACACCGCCGCGCGCAACAACGTG GAGGTCAACGTGACCAAGCGGCTGGAGGTCAGCGAGGACAAGCATGCTCA CACGTGAGAAAAAGAGAGAGGGGGTGAGAGATTGAGATAGAGAATAAGAG AGAGAGAGAGGAGGCCTATAGTTTCTTGCGCTCGTTTCTTCGACTTTTTT TGTTCTCCGATCTCTAGCGTGTTTGTCAGTCAAGCGTGGTTTCTTATTTT GAAGAGCGTCGACCGCGTAAATCGGTCCTGATCAGCCAAGTTTAAAATAC GTCAGTCTAAGAGGGGCGAACGAAAGTATCGTTATCTTGCGAAAAAATCC TAGGCCGCGGCCCCCCCTGAAAGGGGAGGACTACGGAGGAGACTGACTGT AAATGAACGTGCGTGCATTTCGTTTGGTTTGATGGCTGTGATCTCTCTCA AGGTAGACATGCAACCACCACTTCGGTAGCTCGCTCGCCTGCGGAGGTTG TCGCTGCTCTTGTCGTGTCCTCGTGTATGTTGGCCTTTCGATATTTCGCG TGGGACATTTGAACCCATGCTGCAGTAATGCTGTAGCTCATCTCTCGTAG CCCTTCTGCCGCCCCTAGATGACTAGTGTAGTGTGGTTTGATACGATTTT TTGTGGCGTCGCATGGCGCAGCTCCGCTCTCGTTGCCCGCTCCCCCGCGG CTTAGTACCTGTGGTTTGGCGGGGTTTGATGTGGTTGTCGGCAGTTTGGT TTTGTGGGTGGTGGTGTGGAGTGGTGTGGAGTGGTGTGGAGTGGTGTGGA GTGGCGTGGTGTGACTTGGTTTCATGCCTTGACGCGTTTCGCTGTCATGG GAGAACTCGATGAAATGCGAGAACAGCACATTTTACTGCATATTACGATT GTAGGTATGCGTAGGTTCGGCGCTCCTACGTACTCTTCCGCGTTTCGAGG GTTCCGTCGTGGAACGATCTCCTCTCGTTCTTTCGTTCGTTTGCTGAAAA TTGTCACCTACATTGTGATTGATTCCGTGCGAGCTGGCAATGTCCAGTAG AGACCGCTCGCTGTGTCTGTTTTCGGCATCTATCCACCGAAGGTAGAGCA TGTGACCGTTGATGGATGTACGTAGAGCATGTGACCGTTCCGTAACCCAG CATTTTGTCTTGTGCCTCTTGGCTCGCCGTTTATTTCCTCAACTGTGTTG ACTTGATTCTCAATACCCTGTATAACTCTCGTTTGCGTTGTTTCCGCACG TTCAGTCCGGCGTGGTTGTTGGCTCGCTTGCTTGGGGGTACAATCACCTC CTTTGCCCAGCCCGGCTTAGAGCCCAACCCGCACCCTGACCCAACCCAAT CCAATCCGATCCGATCCACAGGGGCTGCGTGAACGTTGTGTCCACCGTGT ACGGCTTCGTGAAGAAGCAGATGGGTACGGGGAGGACCCTGGAGCGAGGG GAGTGCTCCCTCCCGCCGCTGCAGTACGCCACCCGTGCCTTCTGGCTGGA CGTAGGCACGACGGCGAGGCGGAGAGTCGAGGAAGAGGGCCTGGACTTGG AGGTGTGTGCGTGTTGCATGTGCGTGGGTTCTTCGTGAGTTAGGAAGCAT TGGTTGGGCTTATTGTCACTGGATGGCCAGTGGTAGATATGAGAAAGAAA AGCGTGAATTTCTGTCTTGTCCGCGGAATGCCGCCATAGGGATGTGTGCG TTTGAGAGGGACGGAGAAAGAGAGAGGCAGATAGACAAGGCAGAGACAGA GAGAGAGAGAGCTGTTTCAATTTTTGTTGTACGGATACAGCAGTAGTGGA GCGAACTACAACATACTAGGCATCATGGTGTCTATGGCGCTACAATGCGC GGCCTGGCCCGTGTCTCGCTGACGATCCGCGCGTCTGTTTTAGGGTCCTC ATTGTCTCAACGTATCTTCTTTTTCCTTCTCCTTTTTCAGCCATGTGCAT GTGGGAGTGCCGTTGTTGTTGCTGCTGCTGTCATTGTGGTTGCTCTCTCC ACGCAGAAGTACACGTGATGGTCCCCACCCTGCTGCGACTCTTCTTCTGT AGTACGCCATACTCCAATAAAACGCTTCGTCGTCACGTGCCCGTCGTTCG TTGCACGCCGCACTCGCTCGCTCTCTGCGCTGCATGGCATGTGGTGTGCG TGTGTCAACAAAATAATACCGACACCAATAATTAAAAAAAAAAACTCAAG GGCGGGGTCCACGCGGTTGGGCACGCCCTCCTCGCCGTTGTGCCGCTCTT CCTGCTGTGCGACGCGGCCGACGTGGACTGCGAGCACGCAAGGCCCCACC ACAGCCGCCCTCAGCCGCAGCGCATCCTGGTGTTCGACAAGCGCCCGGGG GGCGTGGGGGTCTCGGACGCCATGTTCGGCTGCCACAGGCATGTTTTGTT TGTTGGCATCGACCGCGCTAACCGGCTAACCAATGGATTTACGTCAGTCT CAGTGCGGTTGAAAGCACAAGTGTTGTGTGTGTGTGTTTTTTTCTTCTTA TTTAGTATCGATCGCACTAGCCGACTGACCGATGAACAGGCGTCAGTCTT GCAGCGGGATAAGAAGCACGAAGACTTTATAATCAAAGGGTGGGGGTGTG TGTATTAGTGTGTGTGTTTTTTTGTGTCTTGTGTATACATTCATTCACGG ATGAGATCGCAATGGCGCGTGTTGATGGCGGCTTGGGTTGTGTGTGTTTG CGTACGTGCGTGTGGTACTTTACTCGATGGCTTCGTTCCGTGCGCTAGTT AACCGGCTGGCTGTAAACCGACGTGTCGAATTTCCTTCTTTTAAGTGGGT AGCAAGAATGGGCATGCGTGTGTCCAATGCGCTGCTTGCTGCCACTGACC GTTTCTCGCCAATCAACTTCTCTTCCGGAGGAAAGGACCCCACGACGTTT GAGTGAGGCTATCCTACCGCAGTGCATTTCTCGACATCACTTTATTCTCT TCTCTAGGCACGGGCGAAGCCGGCTGGTAGGGCTCCGCGGTCGCTTGATT TGCCACGGATTCCGGGGAATAAATTCAAAGCGACAAGCTGGTGTCGAGAA GTCCTACGAATACAACAACAGCGAGCGGCAGGGACACGTAGCACATGGTA TTGAGTATGACCCTCCCGCCCCCCTACGCGCTTCGCTGCCGCTTCCTGGC TCATATCCTCCCCATCCCTGCATTGTCGTGATCTTCGCCGAATCGTTACT TCCTTTTCCTATGTTCTTTTGCGGATCAGAGCTGTGCTTAGCAAGGCCCT GGAGCTGGTAGAGGGCTGCCCCTGCCCCGACGGTTGCCTGGCCTGCATTC ACGACCACGGCTGCACTGGCTACAACGCGGTAAGTCGCTGCTGCGGCGGC CATCACCTTGTTGTAGCCGGGCGACACGCCTCTTGCTGGTGTCAGTTGTG CTCGGCCCTTCCGGCTGCCCTCGTCAATCCTGGCACTCAACCTGGATGCG CGTATGTTTTGTTCTTTTGCGTTTTACCCTGTGACGATCTTTTTGACTCT GTCACACCACCTGGTTATGTAAGTCATTTTTTATTTTAGCCTCGGGTAAT ATTTGACTCATTCCTGTGCTGAGAAATTGTGCGCCTCAGGTATAGCACAA GCCAACCTGGAGAACACACGTTTTTTTTTTTTTGTCCCTGGTCACTCCAT CGGTCATGTGCTGCCCTTGTCTTCGTGTTTCATGTCTAACTGTTGACCAC CCCCACACGCACAGCGGGGGCATCACGGCGAACCACACCAAAACAAACCA AGCGTTGAAAACACAGCCGGAAACGAGGGTTGGTTGCATCATCCCCCGTC GGGTGTCATGTTCGCCCGACCCCTCTCCCCGCCGTAGCCAGAGTGCCGAA TCGTGTACCTTTTATAGAGCGTACACCAACGACCCCCCCCCCCCCAACGA CGAAATATGCGCAGATCATCGACAAGCGGGCGGCCGTGGTGATCCTCGAG AGCCTCATCCAAGACATGATGACAGGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9864:253..4730+

>mRNA_E_fasciculatus_S2_contig9864.17865.1 ID=mRNA_E_fasciculatus_S2_contig9864.17865.1|Name=mRNA_E_fasciculatus_S2_contig9864.17865.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=786bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9864:253..4730+ (Ectocarpus fasciculatus EfasUO2)
TTCAAGGTGGTAAACGACTCGAAGGGGGGCGAGCCGTACGACAGCGTGGA
GTACAGCAGGGCGTTTTTCACGCTGTTCCAGGGGGCCATCTACCTGCACC
AGGCGCGGCAGTACCTGGTGACGAGGCTGGATCTCGGGGCGCACGTGGCG
CACACGGTCCCCGTCAAGGTGAACTACTACACCGCCGCGCGCAACAACGT
GGAGGTCAACGTGACCAAGCGGCTGGAGGTCAGCGAGGACAAGCATGCTC
ACACGGGCTGCGTGAACGTTGTGTCCACCGTGTACGGCTTCGTGAAGAAG
CAGATGGGTACGGGGAGGACCCTGGAGCGAGGGGAGTGCTCCCTCCCGCC
GCTGCAGTACGCCACCCGTGCCTTCTGGCTGGACGTAGGCACGACGGCGA
GGCGGAGAGTCGAGGAAGAGGGCCTGGACTTGGAGGGCGGGGTCCACGCG
GTTGGGCACGCCCTCCTCGCCGTTGTGCCGCTCTTCCTGCTGTGCGACGC
GGCCGACGTGGACTGCGAGCACGCAAGGCCCCACCACAGCCGCCCTCAGC
CGCAGCGCATCCTGGTGTTCGACAAGCGCCCGGGGGGCGTGGGGGTCTCG
GACGCCATGTTCGGCTGCCACAGAGCTGTGCTTAGCAAGGCCCTGGAGCT
GGTAGAGGGCTGCCCCTGCCCCGACGGTTGCCTGGCCTGCATTCACGACC
ACGGCTGCACTGGCTACAACGCGATCATCGACAAGCGGGCGGCCGTGGTG
ATCCTCGAGAGCCTCATCCAAGACATGATGACAGGA
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