mRNA_E_fasciculatus_S2_contig9863.17864.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9863.17864.1
Unique NamemRNA_E_fasciculatus_S2_contig9863.17864.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9863.17864.1 vs.
Match: DDHD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT5_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 4.040e-48
Identity = 102/121 (84.30%), Postives = 103/121 (85.12%), Query Frame = 2 
Query:   14 QVPEEGHHQSGAGKGEATARTAEGRAARAAWQSAVMEEDLERNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVVTDATADSDTDA*AGAAAPPASATGKAKQQ 376
            Q+PEEGH  S  G G AT  TAE RAARAAWQSAVMEEDLERNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVV DATA SDTDA A A AP  SA GKA QQ
Sbjct: 1050 QLPEEGHRHSRPGNGAATTGTAERRAARAAWQSAVMEEDLERNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVVADATAASDTDARAPATAP--SAAGKANQQ 1168
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BLAST of mRNA_E_fasciculatus_S2_contig9863.17864.1 vs.
Match: DDHD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT1_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.900e-47
Identity = 102/120 (85.00%), Postives = 104/120 (86.67%), Query Frame = 2 
Query:   17 VPEEGHHQSGAGKGEATARTAEGRAARAAWQSAVMEEDLERNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVVTDATADSDTDA*AGAAAPPASATGKAKQQ 376
            +PEEGHHQS  G   AT  TAEGRAAR AWQSAVMEEDLERNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVV DATA SDTDA A AA  P+ A GKAKQQ
Sbjct: 1079 LPEEGHHQSRPGMRAATTGTAEGRAAREAWQSAVMEEDLERNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVVADATAASDTDARAPAA--PSDA-GKAKQQ 1195
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BLAST of mRNA_E_fasciculatus_S2_contig9863.17864.1 vs.
Match: DDHD (domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIJ9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.450e-17
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 2 
Query:  128 DLERNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVVTDA 298
            D E+NG LAGG RVDY LQEKE EVTNEY+FALG+HVIYW+SKD+SLF+A+Q++  A
Sbjct: 1222 DFEKNGRLAGGYRVDYSLQEKEIEVTNEYLFALGAHVIYWTSKDLSLFMAKQIMLHA 1278
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BLAST of mRNA_E_fasciculatus_S2_contig9863.17864.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCD7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-13
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 2 
Query:  125 EDLERNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVVT 292
            ED+   G L  G R+DY LQEKE E+TNEY+FA+G+HVIYWSSKD+S F+A+Q++T
Sbjct: 1362 EDVPFFGRLNDGDRIDYALQEKEIEITNEYVFAIGAHVIYWSSKDLSYFIAEQLLT 1417
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BLAST of mRNA_E_fasciculatus_S2_contig9863.17864.1 vs.
Match: Phospholipase (putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6D2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.090e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 2 
Query:  122 EEDLERNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVVTD 295
            E  +   G L+ G  +DYCLQE E E+TNEY+FAL +HVIYW+++D SLFVAQ ++ D
Sbjct:  908 ESSINMYGRLSDGLPIDYCLQENEIEITNEYLFALTAHVIYWTNRDASLFVAQHLMGD 965
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BLAST of mRNA_E_fasciculatus_S2_contig9863.17864.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PMJ7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.550e-10
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:  143 GALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVV 289
            G L GGRR+DY LQE E E  NEY+FALG+H  YW++KD+++F+A++++
Sbjct:  381 GQLNGGRRIDYMLQESEVETANEYVFALGAHSAYWAAKDLTMFIAREII 429
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BLAST of mRNA_E_fasciculatus_S2_contig9863.17864.1 vs.
Match: DDHD (domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GPN7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.730e-10
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:  143 GALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVVTDATADSDTDA 322
            G L+ G  +DY LQE E E+TNEY+FAL +HVIYW+++D SLFVAQ ++ D +   D +A
Sbjct:  918 GRLSDGLPIDYTLQENEIEITNEYLFALTAHVIYWTNRDASLFVAQHLMGDESIYRDEEA 977
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BLAST of mRNA_E_fasciculatus_S2_contig9863.17864.1 vs.
Match: DDHD (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X310_GLOUD)

HSP 1 Score: 70.5 bits (171), Expect = 3.770e-10
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 2 
Query:  143 GALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVVTDATADSDTDA*AGA 334
            G+L  G  +DY LQE E E+ NEY+FAL +HVIYWS++D SLFVAQ+++ +   D    A  GA
Sbjct:  998 GSLCQGYPIDYTLQENEIEIANEYLFALTAHVIYWSNRDASLFVAQKMILEPPMDEAPPAPVGA 1061
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BLAST of mRNA_E_fasciculatus_S2_contig9863.17864.1 vs.
Match: DDHD (domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RBK1_PETMA)

HSP 1 Score: 67.4 bits (163), Expect = 6.280e-10
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 2 
Query:  137 RNGALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVVTD 295
            R GAL GGRRVDY LQEK  E  NEY+FAL SH+ YW S+D SL + +++  D
Sbjct:  148 RVGALNGGRRVDYVLQEKPIESFNEYLFALQSHLCYWYSEDTSLLILKEIYRD 200
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9863.17864.1 vs.
Match: PhosphoLipase ((Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UWY4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.580e-10
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:  143 GALAGGRRVDYCLQEKEFEVTNEYIFALGSHVIYWSSKDVSLFVAQQVVTD 295
            G L  G  +DY LQE E E+ NEY+FAL +HVIYWS++D SLFVAQ+++ +
Sbjct:  170 GRLCQGLPIDYSLQENEIEIANEYLFALTAHVIYWSNRDASLFVAQKLILE 220
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9863.17864.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DDHD4.040e-4884.30domain-containing protein n=1 Tax=Ectocarpus silic... [more]
DDHD1.900e-4785.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
DDHD4.450e-1771.93domain-containing protein n=2 Tax=Tribonema minus ... [more]
Hypothetical1.200e-1362.50protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Phospholipase1.090e-1155.17putative n=1 Tax=Albugo laibachii Nc14 TaxID=89038... [more]
Hypothetical1.550e-1055.10protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
DDHD2.730e-1053.33domain-containing protein n=1 Tax=Albugo candida T... [more]
DDHD3.770e-1051.56domain-containing protein n=1 Tax=Globisporangium ... [more]
DDHD6.280e-1058.49domain-containing protein n=1 Tax=Petromyzon marin... [more]
PhosphoLipase6.580e-1056.86(Fragment) n=1 Tax=Phytophthora megakarya TaxID=47... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9863contigE_fasciculatus_S2_contig9863:3105..4695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size763
Hectar predicted targeting categoryother localisation
Exons2
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842629.4281018-UTR-E_fasciculatus_S2_contig9863:3104..34481696842629.4281018-UTR-E_fasciculatus_S2_contig9863:3104..3448Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9863 3105..3448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842629.4465215-CDS-E_fasciculatus_S2_contig9863:3448..36811696842629.4465215-CDS-E_fasciculatus_S2_contig9863:3448..3681Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9863 3449..3681 -
1696842629.4581816-CDS-E_fasciculatus_S2_contig9863:4511..46951696842629.4581816-CDS-E_fasciculatus_S2_contig9863:4511..4695Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9863 4512..4695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9863.17864.1prot_E_fasciculatus_S2_contig9863.17864.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9863 3449..4695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9863.17864.1

>prot_E_fasciculatus_S2_contig9863.17864.1 ID=prot_E_fasciculatus_S2_contig9863.17864.1|Name=mRNA_E_fasciculatus_S2_contig9863.17864.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=139bp
AGARTSTRRGPPSVRGGQGRGDGTYGRGPSGARGVAERGDGGGPRAKRGP
GGRETSGLLSAGEGVRGDERVHLRAGLARYLLELQGRQPLRGSAGRDRCH
RRLRYGRLSRSSGATGERHRQSEAAVGGANNKQQRNHR*
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mRNA from alignment at E_fasciculatus_S2_contig9863:3105..4695-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9863.17864.1 ID=mRNA_E_fasciculatus_S2_contig9863.17864.1|Name=mRNA_E_fasciculatus_S2_contig9863.17864.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1591bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9863:3105..4695- (Ectocarpus fasciculatus EfasUO2)
GCAGGAGCAAGAACAAGTACCCGAAGAGGGCCACCATCAGTCCGGGGCGG
GCAAGGGAGAGGCGACGGCACGTACGGCAGAGGGCCGAGCGGCGCGCGCG
GCGTGGCAGAGCGCGGTGATGGAGGAGGACCTCGAGCGAAACGGGGCCCT
GGCGGGCGGGAGACGAGTGGACTACTGTCTGCAGGTGCGGTGCAAACAAA
GACAACCAGGCTTTTGTCGCGTGTGGTAAACGCACACGACTAAACCCTTT
CATGAAGGGTTCCACCAACCCTGTACGTGTTCGTGTGTGCGCGTTCAAAG
ACTCTCGGTGGTTATGATTGTCTCGTCCACGACGATGCCTGCCCACTCCC
CCTCTCCCGGCATTTTCTTATACCGAGGCGTGTTTGGTGATAAAGGCGTC
TCATATTTTTGAGTGTTGTGGCGAAGACAGCGGAATACTGCGGTGAGTAC
GGGTTGCCGGGCCATAGCGGGAGGCGCTCTCTTTGGTTTTTGTTTGTTTT
GTTGTTGTCGTGGAAAAATCTCTGAGCATACCTTGCAGGATACGAGAGGC
CGCGCTTGACAGTAGACAACAACGGCCTAATTTAAACCTTCGTTTGACGG
AGAGGGAGAGACGTTTCGTTCGTGTTGGGATGTTGCACTTTGAGGTTGCA
CCTTGAGGAGTCGGGTCTTGTGTGGTGCCTTTTTTTCACTGCTTACCTCC
TCTCACTCTCCGCACACGAGACTCTGACTGGCGCAAGTGTAGTCGTTTGA
TCTGCCGCACGACAGGCCTCAACCAAATCGCACCTTCAATGCTCTTGGTT
TGCATGCTCGGCATCTCAAAGCTCCTTCTTAATGGGATTCTCCGCTCTCA
CGAACCACGCAATCCGGAGAGAATTCGGACTGTAGCTTTGCTGACTCTCT
ACGCATAGGTGGGTCGATTTTCGGGGCCGGTCTTGTTTATTCTCCGCTTG
AGGGTTCCTTCTCCCTTCTCGCTGTAATGTTCGCCACTCGGAATGACGCC
GTTTTCGTCAACAGGAGAAGGAGTTCGAGGTGACGAACGAGTACATCTTC
GCGCTGGGCTCGCACGTTATCTACTGGAGCTCCAAGGACGTCAGCCTCTT
CGTGGCTCAGCAGGTCGTGACCGATGCCACCGCCGACTCCGATACGGACG
CTTAAGCAGGAGCAGCGGCGCCACCGGCGAGCGCCACCGGCAAAGCGAAG
CAGCAGTAGGAGGAGCGAACAACAAGCAGCAACGGAATCACCGGTAGAGC
ACTACGAGCGGATTCATTCACTCATGAGCGCAACATAGTCTAGTAGGAGC
AGGAACGCAGCGACAGCATTGCCAGTGTGGCAGTACTGACGGAATCACTC
ACGAGCGTACGTAACATAGTCGATGGTAGAACGCTAGTGTGCTCCCTCTG
AGGCGGCATGCAGCGCACGAGCAGCGCTCGAAGCACCAGCAGCAGACGGA
AATTCAGCGAGGCAGATCAGGGAGGCCCGCGTGTTACTGTTCGAGGTCCT
TGTCGGATGGACCGATGGGTAAAGTGCAGTGGCTGATCCAAGGATGCACA
AAAACAATTCCGACACCTAACCCCAAAACCTTTATTTAGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9863:3105..4695-

>mRNA_E_fasciculatus_S2_contig9863.17864.1 ID=mRNA_E_fasciculatus_S2_contig9863.17864.1|Name=mRNA_E_fasciculatus_S2_contig9863.17864.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=417bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9863:3105..4695- (Ectocarpus fasciculatus EfasUO2)
GCAGGAGCAAGAACAAGTACCCGAAGAGGGCCACCATCAGTCCGGGGCGG
GCAAGGGAGAGGCGACGGCACGTACGGCAGAGGGCCGAGCGGCGCGCGCG
GCGTGGCAGAGCGCGGTGATGGAGGAGGACCTCGAGCGAAACGGGGCCCT
GGCGGGCGGGAGACGAGTGGACTACTGTCTGCAGGAGAAGGAGTTCGAGG
TGACGAACGAGTACATCTTCGCGCTGGGCTCGCACGTTATCTACTGGAGC
TCCAAGGACGTCAGCCTCTTCGTGGCTCAGCAGGTCGTGACCGATGCCAC
CGCCGACTCCGATACGGACGCTTAAGCAGGAGCAGCGGCGCCACCGGCGA
GCGCCACCGGCAAAGCGAAGCAGCAGTAGGAGGAGCGAACAACAAGCAGC
AACGGAATCACCGGTAG
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