mRNA_E_fasciculatus_S2_contig9851.17859.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9851.17859.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI) HSP 1 Score: 963 bits (2490), Expect = 0.000e+0 Identity = 617/874 (70.59%), Postives = 632/874 (72.31%), Query Frame = 1
Query: 1 KMALLPKMVSVMKSYAGQRAADGAQAASNGGXXXXXXXXXXHGAARATXXXXSAAVSFQPRAALSCLRVLCAVGGRAPWAAERVASEPGLLDAVREAFLEPRADGTLPFDLSETATTT------------PPSQESATSARVEGKARRGRAGGPTGSPPPP-QEQLALLAVRLAKVLVQSGRGVALALSRTPLLGSTKGWLALGQGSRRTLPALEAVQREVLELWRCCLSYGIDVAAADTVVLVARGQGWWPGLSGGVG------------------------------------------------------DGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLPPRLAFYRALHQLACACVLPPGGDAAGRNXXXXXXXXXXXXXKAGVGAAGAGAREETESFSVGGVAVVPESWADVGDTVDAAVEAALLWLLSGARGXXXXXXXXTPETAQQAAAVHLVACWVERYQAMSRTAGRRASRHLESTVEDAAVLFSSLLASPALPLPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-GLDWLSGVFRLGLACERAVPGEAAAALASAPEATAXXXXXXXXXXXXXXXXX--------------ASPPAAFLRRVRRADAGARWLGCRLLALGCRGGVRGAGWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSPAEEGSKRPNGDPAAAASXXXXXXXXASASLLRTLFRGAISDPVALSQSSFHLDGRWASLQSLKACAPPGTASLLPLPPHWLFLPLASQASFGGGKAAATAVSACLSLLVQLEREESAYVWGGGXXXXXXXXXTGCVSPEVKLYHLANACLYGASVLSGLGAVQNFDWLFGRY 2376
+MALLPK+ SV+KSYA Q AADGAQAAS+GG HGAARAT + AVSF+PRAALSCLRVLCAV GRAPWAAERVASEPGLLDAVREAFLEPRADGTLP DLSETA T PP QE ATSAR EGKAR G PP QEQLALLAVRLA+VLVQSGRGVALALS+TPLLGSTKGWLALGQGSRR LPALEAVQREVLELWRCCLSYG+DVAAADTVVLVARGQGWWPGLSGGVG XXXX DSLPPRLAFYRALHQLACACVLPPG AAGRN KAG GAAG G R+E E FSVGGVAVVPESWADVGDTVDAAVE ALLWLLSG RG XX ETAQQAAAVHLVACWVERYQAMSRT GRR SRHLEST EDAAVLFSSLLASPALPLPAAVA XXXXXXXXXXX A GLDWLSGVFRLGLACERAVPGEAAAALASAPEATAXXXXXXXXXXXXXXXXX A PPA FLRRVRRA+AGARWLGCRLLALGCRGG R GWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSP EEGS+RP+ DPAAAA AS SLLR LFRGAISDPVALSQSSFHLDGRWASLQSLKAC PPGTASLLPLPPHWLFLPLASQ GG KAA+TAVSACLSLLVQLEREESAYVW GG X TGCVSPEVKLYHLANACLYGASVLSGLG VQ+FDWLF RY
Sbjct: 591 EMALLPKIASVIKSYADQVAADGAQAASDGGGGLGDKGSF-HGAARATAA--ATAVSFRPRAALSCLRVLCAVAGRAPWAAERVASEPGLLDAVREAFLEPRADGTLPLDLSETAPATVTATAIPKQLSPPPPQEPATSARAEGKARTEGPRDANGCPPXXXQEQLALLAVRLARVLVQSGRGVALALSQTPLLGSTKGWLALGQGSRRPLPALEAVQREVLELWRCCLSYGVDVAAADTVVLVARGQGWWPGLSGGVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGEEPTAXXXXXXXXXXXXXXXXXXXXXXXVGAQSSSGVAQSTSGGAGGGSRGGDSLPPRLAFYRALHQLACACVLPPGVSAAGRNKNDGAETAGGDG-KAGAGAAGTGVRKEAEGFSVGGVAVVPESWADVGDTVDAAVEGALLWLLSGVRGGGRVGGXXAAETAQQAAAVHLVACWVERYQAMSRTIGRRGSRHLESTAEDAAVLFSSLLASPALPLPAAVAATTAVTRRGDQXXXXXXXXXXXSGDGFSQRGVSSGEAAAAAGLDWLSGVFRLGLACERAVPGEAAAALASAPEATAXXXXXXXXXXXXXXXXXXXXXXXXXXPTAAVAPPPATFLRRVRRAEAGARWLGCRLLALGCRGGGREGGWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSPEEEGSERPSDDPAAAA----VGTAAASTSLLRMLFRGAISDPVALSQSSFHLDGRWASLQSLKACTPPGTASLLPLPPHWLFLPLASQ---GGEKAASTAVSACLSLLVQLEREESAYVWSGGGXGG-----TGCVSPEVKLYHLANACLYGASVLSGLGVVQHFDWLFSRY 1448
BLAST of mRNA_E_fasciculatus_S2_contig9851.17859.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML9_9PHAE) HSP 1 Score: 928 bits (2399), Expect = 0.000e+0 Identity = 599/858 (69.81%), Postives = 617/858 (71.91%), Query Frame = 1
Query: 4 MALLPKMVSVMKSYAGQRAADGAQAASNGGXXXXXXXXXXHGAARATXXXXSAAVSFQPRAALSCLRVLCAVGGRAPWAAERVASEPGLLDAVREAFLEPRADGTLPFDLSETA--TTTP-----PSQESATSARVEGKARRGRAGGPTGSPPPP--QEQLALLAVRLAKVLVQSGRGVALALSRTPLLGSTKGWLALGQGSRRTLPALEAVQREVLELWRCCLSYGIDVAAADTVVLVARGQGWWPGLS-GGVG----------------------DGA--------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLPPRLAFYRALHQLACACVLPPGGDAAGRNXXXXXXXXXXXXXKAGVGAAGAGAREETESFSVGGVAVVPESWADVGDTVDAAVEAALLWLLSGARGXXXXXXXXTPETAQQAAAVHLVACWVERYQAMSRTAGRRASRHLESTVEDAAVLFSSLLASPALPLPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AGLDWLSGVFRLGLACERAVPGEAAAALASAPEATAXXXXXXXXXXXXXXXXX-------------ASPPAAFLRRVRRADAGARWLGCRLLALGCRGGVRGAGWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSPAEEGSKRPNGDPAAAASXXXXXXXXASASLLRTLFRGAISDPVALSQSSFHLDGRWASLQSLKACAPPGTASLLPLPPHWLFLPLASQASFGGGKAAATAVSACLSLLVQLEREESAYVWGGGXXXXXXXXXTGCVSPEVKLYHLANACLYGASVLSGLGAVQNFDWLFGRY 2376
MALLPK+ SV+KS AGQ +ADGAQA S+GG HGAARAT +AAVS +PRAALSCLRVLCAV GRAPWAAERVASEPGLLDAVREAFLEPR DGTLP DLSE A TTT P QE AT AR EGKAR G G G P QE LALLAVRLA+VLVQSGRGVALALS+TPLLGSTKGWLALGQGSRR LPALEAVQREVLELWRCCLSYGIDVAAADTVVLVARGQGWWPGLS GGVG DG DS+PPRLAFYRALHQLACACVLPPGG+AAGRN KAGVGAAGAG R+E E FSVGGV VVPESWADVGDTVDAAVEA LLWLL RG T ETAQQAAAVHLVACW+ERYQAMSRTAGRRAS HLES EDAAVLFSSLLAS ALPL AAVA XXXXXXXXXXXXXX AGLDWL GVFRLGLACERA+PGEAAAALASAPEATA XX A PPA FLRRVRRA+AGARWLGCRLLAL RG RG GWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSPAE GS+RP+ DPAA XXXXXX SASLLRTLFRGAISDPVALSQSSFHLDGRWASLQSLKACAPPGTASLLPLPPHWLFLPL SQ GGGKAA+ AVSACLSLLV+LEREES YVWG XXXXXXX TGC PEVKLYHLANACLYGASVLSGLGAVQNFDWLF RY
Sbjct: 144 MALLPKIASVIKSCAGQVSADGAQAGSDGGGGLGDMGSV-HGAARATAE--AAAVSLRPRAALSCLRVLCAVAGRAPWAAERVASEPGLLDAVREAFLEPRTDGTLPLDLSEAAPATTTKQLSPAPPQEPATPARAEGKARGGGPGDANGCPXXXXXQEGLALLAVRLARVLVQSGRGVALALSQTPLLGSTKGWLALGQGSRRPLPALEAVQREVLELWRCCLSYGIDVAAADTVVLVARGQGWWPGLSVGGVGXXXXXXXXXAPLVADTVTVERGDGGXXXXXXXXXXXXXXXTAATPVAAKSLPVGVGVGGARSTSGGASGGSRGGDSVPPRLAFYRALHQLACACVLPPGGNAAGRNKNDGAETAGGDG-KAGVGAAGAGLRKEAEGFSVGGVVVVPESWADVGDTVDAAVEAVLLWLLRSVRGGGGVDGGGTAETAQQAAAVHLVACWMERYQAMSRTAGRRASGHLESIAEDAAVLFSSLLASSALPLMAAVAAAVTRGCDQSGGGXXXXXXXXXXXXXXSFSQRGVSSGEAVTAGLDWLCGVFRLGLACERAMPGEAAAALASAPEATAAALXXFLATAGPTAGAVXXGGALTTPTAAVAPPPATFLRRVRRAEAGARWLGCRLLALVSRGVGRGGGWPWAALRRDCALQAMALCERGDEAIAVGLLAEALPGSTVDSPAENGSERPSDDPAA-----XXXXXXXSASLLRTLFRGAISDPVALSQSSFHLDGRWASLQSLKACAPPGTASLLPLPPHWLFLPLVSQ---GGGKAASMAVSACLSLLVELEREESTYVWGXXXXXXXXX--TGCNPPEVKLYHLANACLYGASVLSGLGAVQNFDWLFSRY 987
BLAST of mRNA_E_fasciculatus_S2_contig9851.17859.1 vs.
Match: RPAP1_C (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX8_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 4.980e-13 Identity = 265/767 (34.55%), Postives = 320/767 (41.72%), Query Frame = 1
Query: 178 PRAALSCLRVLCAVGGRAPWAAERVASEPGLLDAVREAFLEPRADGTLPFDLSETATTTPPSQESATSARVEGKARRGRAGGPTGSPPPPQEQLALLAVRLAKVLVQSGRGVA---LALSRTPLLGSTKGWLALG-QGSRRTLPALEAVQREVLELWRCCLSYGIDVAAADTVVLVARGQGWWPGLSGGVGDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLPP-RLAFYRALHQLACACVLPPGGDAAGRNXXXXXXXXXXXXXKAGVGAAGAGAREETESFSVGGVAVVPESWADVGDTVDAAVEAALLWLLSGARGXXXXXXXXTPETAQQAAAVHLVACWVERYQAMSRTAGRRASRHLESTVEDAAVLFSSLLASPALPLPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLDWLSGVFRLGLACERAVPGEAAAALASAPEATAXXXXXXXXXXXXXXXXXASPPAAFLRRVRRADA------GARWLGCRLLALGCRGGVRGAGWPWAALRRD-------CALQAMALCERGDEAIA-----VGLLAEALPGSTVDSPAEEGSKRPNGDPAAAASXXXXXXXXASASLLRTLFRGAISDPVALSQS-SFHLDGRWASLQSLK----------ACAPPGTASLLPLPPHWLFLPLASQASFGGGKAAATAVSACLSLLVQLEREESAYVWGGGXXXXXXXXXTGCVSPEVKLYHLANACLYGASVLSGLGAVQNFDWLFGRY 2376
P A+ CLRVL AV + AER+ +EPGLLDAVREAF+EP G P LS G GG TGS + A+ A+RLA+ + R A L R +L + + LALG L A Q E L +W CL YG+ + AA+TV+ +A+ AA XXXXXXXXXXXXXXX S P A YR L LA A P D R A E E + + P++ A + + + AA+ AA L E Q AAA L A RTA L + V L A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DWL V +L LAC+ A P AAA A XXXXXXXXXXXXXXXX L +LA G WP A L C L ++ E G+E A +GL A + V EE K S L L+ G++ + L+ S + H G W SLQSL A A ASLLPLPPHWL LPL S+ G G AA AVS CL LL+ ++ + + ++PE++LYHL AC YG VL+ F L R+
Sbjct: 393 PPGAVECLRVLVAVARSSAANAERIIAEPGLLDAVREAFVEPDTAGAPPVPLS--------------------CGSSGGGGGSTGSGNDVERSPAVWALRLARAVCHGSRLAARHVLYGGRGGILDAAQALLALGGXXXXXXXXVLAAAQCEALAVWHACLRYGLALEAAETVLPLAQAL-------------AAPRSAAXXXXXXXXXXXXXXXGHQWGALTSSRSPIAAALYRCLVALAYAST-PLPQDVIDR----------------------ASEPERLELEADAKLRPAPQALAALRERM-AAIAAATL-----------------AELQQAAAAQELSA----------RTAAFAPMLQLVAAV---------------LATQPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADWLCIVCQLLLACDSAQPEACAAAXXXXSNADVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEALHACVLARGL--------WPLAVLPAARAGAVAACPLFMVSEFEAGEEYPAAQMMLLGLRAGVAGSAEVQQGVEEDDKP-------------------SLPFLEALYCGSMCEVATLAHSRALHTGGAWHSLQSLTLRQRQHAVGAAAAAAEPASLLPLPPHWLLLPLTSR---GSGAAAVRAVSQCLRLLLSVDESPALSTY------------MRALAPELRLYHLMAACTYGQGVLADPAVAPPFRALLSRW 1018 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9851.17859.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9851.17859.1 >prot_E_fasciculatus_S2_contig9851.17859.1 ID=prot_E_fasciculatus_S2_contig9851.17859.1|Name=mRNA_E_fasciculatus_S2_contig9851.17859.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=791bp MALLPKMVSVMKSYAGQRAADGAQAASNGGSGGLGDKGGFHGAARATAAAback to top mRNA from alignment at E_fasciculatus_S2_contig9851:434..5624+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9851.17859.1 ID=mRNA_E_fasciculatus_S2_contig9851.17859.1|Name=mRNA_E_fasciculatus_S2_contig9851.17859.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5191bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9851:434..5624+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9851:434..5624+ >mRNA_E_fasciculatus_S2_contig9851.17859.1 ID=mRNA_E_fasciculatus_S2_contig9851.17859.1|Name=mRNA_E_fasciculatus_S2_contig9851.17859.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2373bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9851:434..5624+ (Ectocarpus fasciculatus EfasUO2)back to top |