mRNA_E_fasciculatus_S2_contig985.17854.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig985.17854.1
Unique NamemRNA_E_fasciculatus_S2_contig985.17854.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK1_9PHAE)

HSP 1 Score: 385 bits (990), Expect = 1.080e-129
Identity = 219/237 (92.41%), Postives = 223/237 (94.09%), Query Frame = 1 
Query:    1 SCRDGFLWRTRSYLRAWDRGIAVVVRVSSXXXXXXXXXXXXXXXXXXXLAAAEPSGRLCEGVELLETALGVAEGSLPPAQFQQFWTALASEVDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLTRRRPERHFPALAEAAVLLSLEKSQLRSLSSGLDAHGGGVEEAVRGVGWDGWREEGGALSPEGTQMRDMLENVGVRRLGPAEASILLDKRLKGDRLAVLGYLSAAAGE 711
            SC DGFLWRTRSYLRAWDRGIAVVV  S XXXXXXXXXXXXXXXXX    AAEPSGRLCEGV+LLETALGVAEG LPP QFQQFWTALAS +DLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSL RRRPERHFPALAEAAVLLSLEKSQLRSLSSGLDAHGG VEEAVRG GWDGWREEGGALSPEGTQMRDMLENVGVRR+GPAEASILLDKRLKGDRLAVLGYLSAAAG+
Sbjct:  242 SCLDGFLWRTRSYLRAWDRGIAVVVHASXXXXXXXXXXXXXXXXXXSF--AAEPSGRLCEGVQLLETALGVAEGCLPPGQFQQFWTALASGLDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLARRRPERHFPALAEAAVLLSLEKSQLRSLSSGLDAHGGSVEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRRMGPAEASILLDKRLKGDRLAVLGYLSAAAGK 476
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BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ7_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 7.200e-121
Identity = 224/263 (85.17%), Postives = 228/263 (86.69%), Query Frame = 1 
Query:    1 SCRDGFLWRTRSYLRAWDRGIAVVVRVSSXXXXXXXXXXXXXXXXXXXLAAAEPSGRLCEGVELLETALGVAEGSLPPAQFQQFWTALASEVDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLTRRRPERHFPALAEAAVLLSLEK--------------------------SQLRSLSSGLDAHGGGVEEAVRGVGWDGWREEGGALSPEGTQMRDMLENVGVRRLGPAEASILLDKRLKGDRLAVLGYLSAAAGE 711
            SCRDGFLWRTRSYLRAWDRGIAVVVR  +XXXXXXXXXXXXXXXXXXX   AEPSGRLCEGVELLETALGVAEG LPP QFQQFWTALASE+DLTLVKQIVARRVEM+QDEGLQLLADLKVLMGPFDSL RRRPERHFPALAEAAVLLSLEK                          SQLRSLSSGLDAHGGGVEEAVRG GWDGWREEGGALSPEGTQMRDMLENVGVRR+GPAEASILLDKRLKGDRLAVLGYLSAAAGE
Sbjct:  795 SCRDGFLWRTRSYLRAWDRGIAVVVR--AXXXXXXXXXXXXXXXXXXXXXXAEPSGRLCEGVELLETALGVAEGCLPPGQFQQFWTALASELDLTLVKQIVARRVEMSQDEGLQLLADLKVLMGPFDSLARRRPERHFPALAEAAVLLSLEKDGRTHARKGMNTTKRTLHIEGSLFAQSQLRSLSSGLDAHGGGVEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRRMGPAEASILLDKRLKGDRLAVLGYLSAAAGE 1055
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BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Match: RAD50-interacting (protein 1 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86F44)

HSP 1 Score: 56.6 bits (135), Expect = 1.220e-5
Identity = 47/167 (28.14%), Postives = 72/167 (43.11%), Query Frame = 1 
Query:  175 CEGVELLETALGVAEGSLPPAQFQQFWTALASEVDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLTRRRPERHFPALAEAAVLLSLEKSQLRSLSSGLD---AHGGGVEEAVRGVGWDGWREEGGALSPEGTQMRD---MLENVGVRRLGPAEASILLDKR 657
            C   E+L   L   + +L      Q W  L S+++  L ++++       +   LQL  D+   + P  S    +PE HF  + E   LL++ K     L   LD     G   EE           EEG A   +GT +R    +L  +GV +L P+EA ++LD R
Sbjct:  674 CPMFEVLSEHLHWLKDTLSIHLLSQAWQILCSDLNKFLYQKLILVN-NFNEGGALQLQFDMTRNLFPLFSQFTEKPENHFKEIKEVCFLLTISKGSALLLREALDFPNRQGSSSEED----------EEGTAKQKDGTSLRGPARVLAEMGVHKLTPSEAKVILDLR 829
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.080e-12992.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.200e-12185.17protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
RAD50-interacting1.220e-528.14protein 1 n=1 Tax=Ischnura elegans TaxID=197161 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig985contigE_fasciculatus_S2_contig985:309..4553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score379.4
Seed ortholog evalue1.2e-102
Seed eggNOG ortholog2880.D8LBJ7
Model size715
KEGG koko:K20474
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of signal transduction involved in mitotic G2 DNA damage checkpoint
EggNOG OGsKOG2218@1,KOG2218@2759
Cds size711
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842628.4078805-CDS-E_fasciculatus_S2_contig985:308..5421696842628.4078805-CDS-E_fasciculatus_S2_contig985:308..542Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 309..542 +
1696842628.4211802-CDS-E_fasciculatus_S2_contig985:1472..15711696842628.4211802-CDS-E_fasciculatus_S2_contig985:1472..1571Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 1473..1571 +
1696842628.4300745-CDS-E_fasciculatus_S2_contig985:2122..22451696842628.4300745-CDS-E_fasciculatus_S2_contig985:2122..2245Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 2123..2245 +
1696842628.4503677-CDS-E_fasciculatus_S2_contig985:3800..39261696842628.4503677-CDS-E_fasciculatus_S2_contig985:3800..3926Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 3801..3926 +
1696842628.4625597-CDS-E_fasciculatus_S2_contig985:4422..45511696842628.4625597-CDS-E_fasciculatus_S2_contig985:4422..4551Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 4423..4551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig985.17854.1prot_E_fasciculatus_S2_contig985.17854.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig985 309..4551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig985.17854.1

>prot_E_fasciculatus_S2_contig985.17854.1 ID=prot_E_fasciculatus_S2_contig985.17854.1|Name=mRNA_E_fasciculatus_S2_contig985.17854.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=237bp
SCRDGFLWRTRSYLRAWDRGIAVVVRVSSSAAATASSALPGGPSSSSSLA
AAEPSGRLCEGVELLETALGVAEGSLPPAQFQQFWTALASEVDLTLVKQI
VARRVEMTQDEGLQLLADLKVLMGPFDSLTRRRPERHFPALAEAAVLLSL
EKSQLRSLSSGLDAHGGGVEEAVRGVGWDGWREEGGALSPEGTQMRDMLE
NVGVRRLGPAEASILLDKRLKGDRLAVLGYLSAAAGE
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mRNA from alignment at E_fasciculatus_S2_contig985:309..4553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig985.17854.1 ID=mRNA_E_fasciculatus_S2_contig985.17854.1|Name=mRNA_E_fasciculatus_S2_contig985.17854.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4245bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:309..4553+ (Ectocarpus fasciculatus EfasUO2)
TCCTGCCGCGATGGTTTCCTGTGGCGCACGAGGTCGTACCTGCGCGCGTG
GGACAGGGGTATCGCCGTCGTCGTGCGCGTCTCCTCCTCGGCGGCGGCGA
CGGCTTCTTCGGCCCTGCCCGGTGGTCCGTCGTCATCGTCGTCGTTAGCA
GCAGCCGAACCCTCGGGGCGTCTTTGCGAGGGGGTGGAGCTGCTCGAGAC
GGCCTTGGGAGTGGCTGAAGGGAGTCTCCCCCCGGTGAGTCAATCAGCGA
AACGGTCATGGCCTACATTTTGCCCATCCCGGCCTATCGCCGACTAGGCG
GCTGAGAGAGCTTTTTCTGGACGAAGTTGTAGCAGTGGTAAGTGGCTTCG
TTAGGTGAGGGGAAGGTCGGTCAGGCCACAGGGCAGTCTCATCCAACGAG
TAGCCTTTTGCGCCTGGTACAATGCGAGGTGTTGGAGGTATCGCCCGGAA
AGGCAGGACATGACGAAAAGAAAAAGTCGTCTATACCGAACGGCAGTTCT
GTTCGTTGGGCCTTGCCTGTCTGTCTTTCTGTCTATGTGGAATTGTCGTT
TTTGTAGCGATCTTCTTCGCTGCGATCACTTGGGTGAACGTGTCTCGACG
AGATTGATCTTTCCAACACCACCCTTTGCTCTTTGCCCTTTGCGGCATTG
ACAACATTGACAACATTGACAACATTGACAACATTGACAACATTGACAAC
ATTGACAACATTGACTACCTCTTGGTTGTGGAGCTATCGAGCCGTGACGC
GCGAGTCTCGGAGGGTTTGCGGTCACCGGCACAAACACGGCGGTAGCAAT
GCGTGATGCGACTTGTCTTTGCTTTGGCGGTCGAGATATCGTCGAGGCGA
CGAGTTGTAGAGCGACGCCGGACACGAGAGGTCCAAAGGCCAGGGAGTGC
AACAGACTCAATAAATGGGATTTGGTCTCTGCATGGGCGAATGAGAAAAC
TCCCATCGCCTGTCCAGCGAAGTGTCCGAAAGATGCCAAGGGCGAACGTA
CGACAACGAATACACGACTCCCGTATATGTTATGAGGGTGCCAGGGCCGT
TTGGTACATAGTAGGATAATTGATGGTATTTTTCTCTTCCTCATGTATTC
ACGTCCCCGCCTTCCTCCTCCTCCTCTTCTTGTTGCTCTTCCTCTTCTTT
TTTCACGGAAACAGGCCCAGTTCCAGCAGTTCTGGACGGCACTGGCGAGC
GAGGTGGACCTGACGCTCGTAAAGCAGATCGTCGCCCGCAGGGTGGAGAT
GACCCAGGACGAGGTAGGATATCACAGTAGCCGCAGTGTTCTCTGTACCG
CCACGGCCAAGGGAAGCGCGGGTTTGCTGTCATCTGCTTGAGTTGAAGGA
GAGGGCGTGCGCGACGGCGGCACACTCACCGCCCGTTCCTTGCTGCTCGT
GGCATGCCCGCATCGTGTATCACTCCTCGCTGGGCAGTCTTGGCGTCTGT
GTGTATCACTTTTATCACTTTGCATGCACCACCCGTCCACAGCTTCTCGG
TGAAGACGATGATGATAATGAGGGGGATGATGTTGAGGTACGCGACGGTG
GTACACACATACACATGTGCCGACGACGGCGTAGTGACTCCCTCCCGCAG
GACTGTTAATGTTGGTGGTGGTGACGCCGATCGCGCCGATGACACCTACG
AGAAGATGTGTTAATTTTTTATTTTGTCTTCACTTCAATTCAAAATCAGC
GCTCACAGCACACTTGTGCCGTTTTCTCCAACCCGTGGCCACATCACACA
GAAGGTAAGGGACGATGGTCTAACAATATACAATGGTTGATTTCGCGTCG
ACGGCGGCGTGCAGGGGCTACAGCTGTTGGCGGACCTGAAGGTGCTGATG
GGGCCCTTCGACTCCCTCACGCGGCGCCGGCCGGAGAGACACTTCCCGGC
CTTAGCCGAGGCGGCGGTGCTGCTGTCGCTGGAAAAGGTACGGATGATGG
TGGATTTGCGATTGTTTTTTCTCAACCAGGTATGGACGCCAGGATGGTCA
GCGTTTTCCACCGTATCGATCGATGCACACCCACGCAAGGGCATGGATCC
GAAAGAATAGGGACGCTAGCGAACTACAAGTAGTACAAACATTCTTGTAG
GGTCTTTCTTTACTTGGGGTGATTTCCCACTAACGCGACCAGTGGTGTGT
GTTTGGTGTGTGGGAAACGAAGGCTAATGTTAATGTTCGCACGAAGGCAT
TGCTCACACCTACCCACGACCTTACAGTAGTTTGACCGGGTTCGCTCGGG
CATGCTTGGCACTTCCTCGCCACGTACCGACGAAGACAGACTGACCCTGC
TAGCCTCCAGTGGTACTACTGTAGTAGGCTGATAGAATACCACGTTACGT
CATGCTACTTTTATTACTCTAACTCTACGCGACAGTTGAGGTTCCAACGA
TTTGACTCCACGATGGTTAGTTGAGACCTCAAAGATCAATTTCCTTCTCG
AAGGAGCGCTGGTGTTCTGAAACAGCCTGACCATCACCTTCTTAGAGCGT
GAGCGTTTTGAAACAACCGGACCATGGCCAGGATAAAGAACGCTCCCATG
AAGGGGTTCCAGACAACATCCTGCTATGTTGACAAATTTTGAAAACAAAC
GCAACAGCGCCAGAAAATGAATGCACAAGAGACACACAAGACCAGTCGGA
AGGCATCGCAAAAAAACAAATCCAAAGTTACAGGGCGGCAGTAGAGGCTG
CTCAAACCATGCCTTTCGGGCGTCTATCTCCACACGCCTCCTTTGAAACC
AAGATAAAATTCACGCCATTCTCAATTCAAGTCTAAAGAGCCAAAACGGA
AGGCGCTCAAACAAAGCCGGTGTTGCTAAAAACCTGGTCCGTTGTACTAT
TATAATTTCACTAGAGGACACCCTATAGCAGCGGGAGGGGGGTGTTGGCA
CGCTCAGATCTTCTTCTGTGGTGGTGATATCGAGGGTCGTAGTGGTGGCC
CACACTCTCCGCACATCTCCGCAAATTAGACCGTCACCCAATGTCTTGTA
CTGCTCGTGCTCGCCGCCACTGAACCCAATCTCCTGAACTGCGGGTTTAC
AGGAGTAGCTGGCGCCACTAGCTCCTGTTGACGACCCGTAGTTGAGGGGG
TTGCGGTCCGTGGTGGTGAGCACGACTGTGACAAATGTTGGGTGTCGCTT
GGTTCCGGCGCAGATTCGGACTGTTCTCAGAGGCTTCTGCGACCTTCGAT
TTTTCCGCCCCAGTAGCAACCCTGGACGTGCCAGCACGCACGACGCCTCT
TGATGGCATCCTCTACTGTTTGTCTAGCACAACGCACCAGGTTCCTCCGG
CGGGAAGGTTGTTTTCTTTCTTTGTATGGGTATAAAGTATAAGAGAAAAG
CCAGCGTGAAAATTCCTTGTCTGGGTCCCCTGAAGTCGATAGAAGACAAA
AACAAAACACGACCGAGGCCCTCACCCCACGACGAAACCTCTCCCCCTGT
TTTTGGAAACGCGTCTTTTTCTTCTTTTTCGTCATGGTCCAGTCTCAGCT
GCGGTCCCTGTCTTCGGGCCTGGATGCCCATGGTGGGGGTGTGGAGGAGG
CAGTGAGGGGGGTCGGTTGGGACGGCTGGCGCGAAGAGGGAGGCGCTCTT
TCGCCGGAAGGCACACAGGTTCGGGCGGGGGCGTGTTGTAGGGGGCGTAA
AAAAGCGCCGGCAGGCGGACAAGGAAGGGGACAGACGGGCATAATGGCAT
AACAGACAGGCAGACGCAAAGAGTCGGCACGATTTCGGCCACTGCAGTGC
CCGCCTGCGTTCCTTAGTTTCCATCCTCCTAGATCCCAGCAGTCACTCAC
GGCATGCGTTTATACCCACAGCAGCAATCGAACACTCCACCATCCCGTGG
GGGCATGCTAACGTCCACCCCGCACCCTCTACGGGACCCCATCTCTCTCT
CCGTTTGACTCCTCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCGCCACACGGGCGCCCGGGTGGTGGCGNNNNNNNNNNAAG
TTTCGGGGGGATGGGATTTCAAACTTTTGCTCTTCCGCTCCCCCCCCCCG
GGCCCCCCCCCCCCCCCCCCTTTGCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCACGAGGCAGATGCGTGACATGCTCGAGAACGTGGGCGTTCGACGG
CTGGGGCCAGCGGAGGCCTCCATCCTCCTGGATAAGCGGCTCAAGGGAGA
CCGCCTTGCGGTGCTGGGGTACCTCTCCGCTGCCGCCGGCGAGAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig985:309..4553+

>mRNA_E_fasciculatus_S2_contig985.17854.1 ID=mRNA_E_fasciculatus_S2_contig985.17854.1|Name=mRNA_E_fasciculatus_S2_contig985.17854.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=711bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:309..4553+ (Ectocarpus fasciculatus EfasUO2)
TCCTGCCGCGATGGTTTCCTGTGGCGCACGAGGTCGTACCTGCGCGCGTG
GGACAGGGGTATCGCCGTCGTCGTGCGCGTCTCCTCCTCGGCGGCGGCGA
CGGCTTCTTCGGCCCTGCCCGGTGGTCCGTCGTCATCGTCGTCGTTAGCA
GCAGCCGAACCCTCGGGGCGTCTTTGCGAGGGGGTGGAGCTGCTCGAGAC
GGCCTTGGGAGTGGCTGAAGGGAGTCTCCCCCCGGCCCAGTTCCAGCAGT
TCTGGACGGCACTGGCGAGCGAGGTGGACCTGACGCTCGTAAAGCAGATC
GTCGCCCGCAGGGTGGAGATGACCCAGGACGAGGGGCTACAGCTGTTGGC
GGACCTGAAGGTGCTGATGGGGCCCTTCGACTCCCTCACGCGGCGCCGGC
CGGAGAGACACTTCCCGGCCTTAGCCGAGGCGGCGGTGCTGCTGTCGCTG
GAAAAGTCTCAGCTGCGGTCCCTGTCTTCGGGCCTGGATGCCCATGGTGG
GGGTGTGGAGGAGGCAGTGAGGGGGGTCGGTTGGGACGGCTGGCGCGAAG
AGGGAGGCGCTCTTTCGCCGGAAGGCACACAGATGCGTGACATGCTCGAG
AACGTGGGCGTTCGACGGCTGGGGCCAGCGGAGGCCTCCATCCTCCTGGA
TAAGCGGCTCAAGGGAGACCGCCTTGCGGTGCTGGGGTACCTCTCCGCTG
CCGCCGGCGAG
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