mRNA_E_fasciculatus_S2_contig9825.17830.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9825.17830.1
Unique NamemRNA_E_fasciculatus_S2_contig9825.17830.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 3.450e-49
Identity = 87/123 (70.73%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCLHTTRFTLAWPSVYICLHMRARS 369
            MCRVMGGDL+LL+EIEQNN+TWRSVEGG +IQQALIEPIEY+ VE+S  VKEC VRDALA LVGGE EVETPAG+IDVLSGTEVIEVKYYKQW    G+ L    F    PS+   LH+ A +
Sbjct:    1 MCRVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQHVEKSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFH---PSLAKRLHLFAHA 120          
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.860e-34
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 1
Query:    1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303
            +CRVMGGDLSL R+IEQN + W  VEGG++IQQAL+ P++YKE   ++RV+EC VRDALA LVGG  EVETP+G IDVLS TEVIEVKYY+QW    G+ L
Sbjct:  233 ICRVMGGDLSLCRQIEQNALGWNCVEGGEAIQQALLRPVKYKENCVTERVRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVL 333          
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 9.770e-33
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCLHTTRFTLAWPSVYICLHMRARSV 372
            +CRVMGGDLSL R+IEQN + W  V+GG++IQQAL+ P++  E   ++RV+EC VRDALAF+VGG  EVETP+G IDVLS TEVIEVKYY+ W    G+ L    +   +P +   LH+ A SV
Sbjct:  667 ICRVMGGDLSLCRQIEQNALGWNCVDGGEAIQQALLRPVKNIEDCVTERVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLP---YQSHYPRLSRRLHLFAHSV 787          
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 7.930e-32
Identity = 68/122 (55.74%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCLHTTRFTLAWPSVYICLHMRAR 366
            M RVMGGDL LLR IE+NN+ W SV+GG+ IQ+ALIEPI++ E   S RV+E +VRDALA +VGG+ E ETP G IDVLS TEVIEVK+Y  W    G+ L   R    +P +   LH+ A+
Sbjct:    2 MYRVMGGDLKLLRNIERNNLAWMSVQGGEVIQRALIEPIDHTEKYVSGRVREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRH---YPHLDKRLHLFAQ 120          
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH9_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.970e-25
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   13 MGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303
            M GDL L R+IEQNN+   SVEGG++I+QAL++P+EY+E   S RVKE + R+ALA L+GGE EVETP+G ID  S   VIEVKY+ +W    G+ L
Sbjct:    1 MRGDLGLCRQIEQNNLVRGSVEGGEAIRQALLQPVEYREDGESTRVKESSAREALASLIGGEREVETPSGFIDKPSDA-VIEVKYHNRWKDGLGQVL 96          
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 (n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM53_9PHYC)

HSP 1 Score: 92.8 bits (229), Expect = 1.160e-19
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVE---RSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQW 279
            +CRV+GGDL L  +I +N   WR  EGG  I++ LI P++  E+E    S    E  VRDALA   GG  EV TP+G IDVL+  EVIEVKYY++W
Sbjct:  246 LCRVLGGDLDLCEDINENYECWRVAEGGAEIREDLIAPVQPVELEATRESSCYPEIKVRDALALSQGGRTEVCTPSGRIDVLTSREVIEVKYYQKW 341          
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: Uncharacterized (protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC)

HSP 1 Score: 85.5 bits (210), Expect = 5.050e-17
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303
            MCR++GGDL L   I +N + W S    + ++Q LI P+E+ E+ +     E  +RD LA  +GG+ EV TP G IDVL+ TEVIEVK+Y+ +    G+ +
Sbjct:  239 MCRIIGGDLRLQATINKNYLEWTSAPELEKVRQDLIAPLEHFELYKKRSGHEAVIRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVM 339          
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 ((Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.110e-15
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 1
Query:    1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYK---------EVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303
            +CR+MG D+ ++ E+E  N  W++      +QQAL+  +  +         ++ R   V+E  VRD LA  + G  E+ETPAG  DV++ TEVI+VK ++ W    G+ L
Sbjct:    1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVL 110          
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.200e-13
Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   64 WRSV-EGGQSIQ-------QALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303
            W SV E G++++       +AL   +EYK      +VKE +VRDALA +VGGE E ETP G IDVLS TEVIEVKYYKQW    G+ L
Sbjct:  170 WESVGEEGRTVECISPRLMKALNRRVEYKP--ELFKVKESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVL 255          
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 ((Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.000e-11
Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALI--EPIEYK--EVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303
            +CR+M GD+ ++ E+   N  W++      +Q+ L+   PI     + +  D  +E  VRD LA  + G  EV+  AG  DV++ TEVIE+K+++ W    G+ L
Sbjct:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVL 105          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
FirrV-1-A343.450e-4970.73n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized1.860e-3466.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.770e-3355.65protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
FirrV-1-A347.930e-3255.74n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
FirrV-1-A342.970e-2556.70n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
FirrV-1-A341.160e-1951.04n=1 Tax=Feldmannia irregularis virus a TaxID=23199... [more]
Uncharacterized5.050e-1742.57protein n=1 Tax=Feldmannia species virus TaxID=394... [more]
FirrV-1-A348.110e-1535.45(Fragment) n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
Uncharacterized2.200e-1353.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
FirrV-1-A341.000e-1133.33(Fragment) n=1 Tax=Tribonema minus TaxID=303371 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9825contigE_fasciculatus_S2_contig9825:2130..2519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size392
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionFirrV-1-A34
Ec32 orthologEc-00_006120.1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842626.3402731-CDS-E_fasciculatus_S2_contig9825:2129..25191696842626.3402731-CDS-E_fasciculatus_S2_contig9825:2129..2519Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9825 2130..2519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9825.17830.1prot_E_fasciculatus_S2_contig9825.17830.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9825 2130..2519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9825.17830.1

>prot_E_fasciculatus_S2_contig9825.17830.1 ID=prot_E_fasciculatus_S2_contig9825.17830.1|Name=mRNA_E_fasciculatus_S2_contig9825.17830.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=130bp
MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRV
KECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRC
LHTTRFTLAWPSVYICLHMRARSVRANILS
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mRNA from alignment at E_fasciculatus_S2_contig9825:2130..2519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9825.17830.1 ID=mRNA_E_fasciculatus_S2_contig9825.17830.1|Name=mRNA_E_fasciculatus_S2_contig9825.17830.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=390bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9825:2130..2519- (Ectocarpus fasciculatus EfasUO2)
ATGTGCCGGGTGATGGGTGGAGACTTATCTTTGCTCCGAGAGATCGAACA GAACAACATGACATGGAGGTCTGTCGAGGGGGGTCAGTCCATCCAACAGG CTTTAATCGAGCCAATCGAGTACAAAGAAGTAGAGAGGTCAGACAGGGTG AAGGAGTGTGCGGTTCGAGACGCACTGGCTTTCCTCGTCGGAGGAGAAGC CGAGGTAGAAACACCTGCGGGTAGCATCGATGTACTCAGTGGTACCGAAG TGATCGAGGTGAAGTACTACAAGCAGTGGAGCATGGACTCGGGCAGGTGC TTGCATACCACTCGTTTCACCCTCGCCTGGCCAAGCGTCTACATCTGTTT GCACATGCGGGCGAGGTCGGTACGCGCAAATATTTTAAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9825:2130..2519-

>mRNA_E_fasciculatus_S2_contig9825.17830.1 ID=mRNA_E_fasciculatus_S2_contig9825.17830.1|Name=mRNA_E_fasciculatus_S2_contig9825.17830.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=390bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9825:2130..2519- (Ectocarpus fasciculatus EfasUO2)
ATGTGCCGGGTGATGGGTGGAGACTTATCTTTGCTCCGAGAGATCGAACA
GAACAACATGACATGGAGGTCTGTCGAGGGGGGTCAGTCCATCCAACAGG
CTTTAATCGAGCCAATCGAGTACAAAGAAGTAGAGAGGTCAGACAGGGTG
AAGGAGTGTGCGGTTCGAGACGCACTGGCTTTCCTCGTCGGAGGAGAAGC
CGAGGTAGAAACACCTGCGGGTAGCATCGATGTACTCAGTGGTACCGAAG
TGATCGAGGTGAAGTACTACAAGCAGTGGAGCATGGACTCGGGCAGGTGC
TTGCATACCACTCGTTTCACCCTCGCCTGGCCAAGCGTCTACATCTGTTT
GCACATGCGGGCGAGGTCGGTACGCGCAAATATTTTAAGC
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