mRNA_E_fasciculatus_S2_contig981.17812.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig981.17812.1
Unique NamemRNA_E_fasciculatus_S2_contig981.17812.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig981.17812.1 vs.
Match: Fe-ADH (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9A2_9PHAE)

HSP 1 Score: 733 bits (1892), Expect = 6.300e-262
Identity = 387/431 (89.79%), Postives = 403/431 (93.50%), Query Frame = 3
Query:   21 MRCRLVNIRRSFSSRPGPTPKLIVEADCSWTKVVAQVASHGRTCLAVADENAPGQAAGRCLFELQKAGINCAMFTGRGAYPTTDGIDEAREMARRIGATCIVSVGSGGTIDTAKAAARLHASSGGCKHFLTSPGGVLMGEGGNSKPRRPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAGAAEEGESLAVALVDPMLCTSLSKAQTVAMAMTALSACVDALLARELALASGVPLQNGDALLDLGRRGIGALAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPAQLVARATGSLLGRHSYPSVCAMVFPHVVGDMLGQANSFSGDAQAAEAIERALSLSASLFLGDGNDGPALLSWLEAQGREWLDFASLSSVDSTISAKDVATNIDMLLAIEEDTDAADRVWSAGGTADMAELIVG 1313
            MRCRLV+IRR  SS P P+PKLIVEADCSWTKVVAQV+ HGRTCLA+AD+N PGQA GRCLFEL+KAGINCAMFTGRGAYPT DGIDEAREMARRIGATCIVSVG GGTIDTAKAAARLH+SSGGCK FLTSPGGVLMGE G+SKPR PAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPL   AEEGESL VALVDP+LCTSLSK+QT AMA+TALSACVDALLARELALASG PLQNGDALLDLGRRGI A+AEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPP QLVARATGSLLGRHSYPSVCAMVFPHVVGDML QANSFSGDAQAAEAIERALSLSASLFLGDGNDG AL+SWLEAQ RE LDF SLSSVDSTI+AKDV TNIDMLLAIEEDT AADRVWSAGGT+DMA+ IVG
Sbjct:    1 MRCRLVSIRRKLSSCPSPSPKLIVEADCSWTKVVAQVSRHGRTCLAIADDNTPGQAVGRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGEDGHSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPL---AEEGESLTVALVDPILCTSLSKSQTAAMALTALSACVDALLARELALASGTPLQNGDALLDLGRRGIDAVAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPTQLVARATGSLLGRHSYPSVCAMVFPHVVGDMLSQANSFSGDAQAAEAIERALSLSASLFLGDGNDGQALMSWLEAQERELLDFGSLSSVDSTITAKDVVTNIDMLLAIEEDTAAADRVWSAGGTSDMADHIVG 428          
BLAST of mRNA_E_fasciculatus_S2_contig981.17812.1 vs.
Match: Iron-containing (alcohol dehydrogenase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7C4R5N7_9DELT)

HSP 1 Score: 78.2 bits (191), Expect = 1.190e-11
Identity = 87/239 (36.40%), Postives = 115/239 (48.12%), Query Frame = 3
Query:  180 GQAAGRCLFELQKAGIN-CAM--FTGRGAYPTTDGIDEAREMARRIGATCIVSVGSGGTIDTAKAAARLHASSGGCKHFLTSPGGVL-MGEG-GNSKPRRPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAGAAEEGESLAVALVDPMLCTSLSKAQTVAMAMTALSACVDALLARELALASGVPLQNGDALLDLGRRGIGALAEGLPVALADGKNKLARELLTIGSVCAG 881
            G   GR  F L+   +  CA+  F  RG  PT + +  A E AR  GA  +V++G G  IDTAKA       SG C    T+PG  L   EG G  KP    G  LP VA+PT+AG+GA A    ++  P     V L           +A+VDP L   L  A T A  M AL+  ++A ++R        PL +      L R GI   A  LPVA+ADG ++ ARE + + S+  G
Sbjct:   81 GATPGRAAFLLEALALRGCAVKAFAVRGE-PTLETVGVALEEARAWGAEALVAIGGGAVIDTAKAV------SGWC----TNPGDPLDFLEGIGKGKPLERPG--LPWVAVPTTAGSGAEATRNAVIRVPARRAKVSLRSPHLLPR---LAVVDPELTLELPPAVTAATGMDALAQLLEAFVSRR-----ANPLTDA-----LCREGIPRAARALPVAVADGSDRRAREAMALASLFGG 293          
BLAST of mRNA_E_fasciculatus_S2_contig981.17812.1 vs.
Match: Iron-containing (alcohol dehydrogenase n=1 Tax=Pseudodesulfovibrio cashew TaxID=2678688 RepID=A0A6I6JIR1_9DELT)

HSP 1 Score: 73.9 bits (180), Expect = 2.320e-10
Identity = 70/224 (31.25%), Postives = 104/224 (46.43%), Query Frame = 3
Query:  210 LQKAGINCAMFTGRGAYPTTDGIDEAREMARRIGATCIVSVGSGGTIDTAKAAARLHASSGGCKHFLTSPGGVLMGEGGNSKPRRPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAGAAEEGESLAVALVDPMLCTSLSKAQTVAMAMTALSACVDALLARELALASGVPLQNGDALLDLGRRGIGALAEGLPVALADGKNKLARELLTIGSVCAG 881
            L K  +   +F      P +D +DEA ++ R  G   +V +G G TID+AKA A + A+ G    ++ S      G GG   P R   +ALPLVAIPT+AG G  A+   ++   D    +   G   +    A+++VDP+L  S+   QT    M A     +A LA     AS +          L    +  +A  LP A+A+ +N  AR ++   S  AG
Sbjct:   57 LAKQEVQTIVFDKIAPNPESDDVDEAAKICRETGVDFLVGLGGGSTIDSAKAIALMAANPGTYWDYMQS------GSGGGKMPER---DALPLVAIPTTAGTGTEADPWAVITRSDSAEKI---GWGNDSTFPALSIVDPVLTISVPPRQTAYTGMDAFFHATEAYLATCRQPASDM----------LALEAVHLIAHTLPEAVANPENLEARTVMAWASTAAG 258          
BLAST of mRNA_E_fasciculatus_S2_contig981.17812.1 vs.
Match: Alcohol (dehydrogenase n=1 Tax=Anaerosolibacter carboniphilus TaxID=1417629 RepID=A0A841L4T5_9CLOT)

HSP 1 Score: 72.8 bits (177), Expect = 4.710e-10
Identity = 69/246 (28.05%), Postives = 115/246 (46.75%), Query Frame = 3
Query:  207 ELQKAGINCAMFTGRGAYPTTDGIDEAREMARRIGATCIVSVGSGGTIDTAKAAARLHASSGGCKHFLTSPGGVLMGEGGNSKPRRPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAGAAEEGESLAVALVDPMLCTSLSKAQTVAMAMTALSACVDALLARELALASGVPLQNGDALLDLGRRGIGALAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPAQLVARATGSL 944
            +L+  GI   +F G    P T+ +D+ R M        +V +G G  +D AKAAA L+  +     +L            N +P    G  +P VAIPT+AG G+      +++HP+   L      A  G     ++VDP+L  S++   T    M AL+  V++  ++   +A+ V +        +  + I  +AEGLP+A+ DG +K+AR  + +GS+ A      T    A  ++   G+L
Sbjct:   53 DLEYYGIKHYVFDGIYGEPDTEMVDQVRRMIEEEKIDFVVGLGGGSALDVAKAAAGLYGQNLPTAEYL------------NQRPFEYQG--IPFVAIPTTAGTGSEITLNAVLYHPE---LGNKNSLAHPGFQSKCSIVDPVLTYSMAPEITAMTGMDALTHAVESYTSK---MANPVTMA-------MAGKAISLIAEGLPMAVKDGSDKMARSKMALGSMMAALAFAQTGVGVAHAISHPLGAL 271          
BLAST of mRNA_E_fasciculatus_S2_contig981.17812.1 vs.
Match: iron-containing (alcohol dehydrogenase n=1 Tax=Bradyrhizobium mercantei TaxID=1904807 RepID=UPI0009756A41)

HSP 1 Score: 71.6 bits (174), Expect = 1.210e-9
Identity = 100/364 (27.47%), Postives = 151/364 (41.48%), Query Frame = 3
Query:  195 RCLFELQKAGINCAMFTGRGAYPTTDGIDEAREMARRIGATCIVSVGSGGTIDTAKAAARLHASSGGCKHFLTSPGGVLMGEGGNSKPRRPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAGAAEEGESLAVALVDPMLCTSLSKAQTVAMAMTALSACVDALLARELALASGVPLQNGDALLDLGRRGIGALAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPAQLVARATGSLLGRHSYPSVCAMVFPHVVGDML--GQANSFSGDAQAAEAIERA-LSLSASLFLGDGNDGPALLSWLEAQGREWLDFASLSSVDSTISAKDVATNIDMLLAIEEDTDAADRVWSA 1277
            R    ++K G    +F    A P    +  A ++AR +G  C+V +G G +IDTAK  +    S       +           GN    R  GN LPLVAIPT+AG G+      ++ +  +E     A          +AL+D  L   + +  T A A+ A+  C++A  +R        P+ +  AL     +G+  L E  P+ L+DGKN  AR  + +G+  AG             +  + G++ G  SYP       PH   + L  G    F+  A A E  E A + L    F   G    A +S LE    E       S +++ +SA  V T  D+    EE T    R+ +A
Sbjct:   50 RAAHAMRKGGTATTIFDQVAADPPYSVVRAAVQLARNVGCDCVVGLGGGSSIDTAKVVSVSINSEQSLDDMV-----------GND---RVEGNRLPLVAIPTTAGTGSEVTFVSVLTNDANEKRAIFAPQLMPD----IALLDAELTLGMPRHVTAATALDAMVHCIEAFTSRT----RKNPISDAVAL-----KGLALLVENFPIVLSDGKNLQARNAMLLGATLAGMA----------FINASVGAVHGL-SYPLGARFHVPHGHSNALVMGAVFRFNLPAAAKEYAELAPVVLPGKRFSSPGAAADAFVSRLEEMLAE-------SGLETRLSALGV-TEADVEPMAEEVTQKITRLIAA 367          
BLAST of mRNA_E_fasciculatus_S2_contig981.17812.1 vs.
Match: iron-containing (alcohol dehydrogenase n=1 Tax=Paucidesulfovibrio longus TaxID=889 RepID=UPI0003B3CF92)

HSP 1 Score: 70.1 bits (170), Expect = 4.070e-9
Identity = 66/224 (29.46%), Postives = 103/224 (45.98%), Query Frame = 3
Query:  210 LQKAGINCAMFTGRGAYPTTDGIDEAREMARRIGATCIVSVGSGGTIDTAKAAARLHASSGGCKHFLTSPGGVLMGEGGNSKPRRPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAGAAEEGESLAVALVDPMLCTSLSKAQTVAMAMTALSACVDALLARELALASGVPLQNGDALLDLGRRGIGALAEGLPVALADGKNKLARELLTIGSVCAG 881
            L + G+   +F      P +D ++EA    R++G   +V +G G +IDTAK+AA L A+ G    ++        G GG   P  PA   LP+VAIPT+AG G  A+   ++     +  +   G   +    A+++VDP L  SLS  QT    M A    V++ L       +  P+ +      L    +  + + LP A+ +G +  AR  L   S  AG
Sbjct:   57 LAERGVRSVVFDKVRPNPESDMVEEAAGTCRKLGVDFLVGLGGGSSIDTAKSAALLAANEGSYWDYMQG------GSGGKKTPEHPA---LPVVAIPTTAGTGTEADPWTVITKSGSKEKI---GFGNDSTYPALSIVDPNLMVSLSPRQTAFTGMDAFFHAVESYLNT-----TRSPMNDM-----LAMEAVNLIGQYLPAAVNNGSDMEARTALAWASTAAG 258          
BLAST of mRNA_E_fasciculatus_S2_contig981.17812.1 vs.
Match: Alcohol (dehydrogenase n=3 Tax=unclassified Halobacteriales TaxID=38063 RepID=A0A2R6GGT4_9EURY)

HSP 1 Score: 69.7 bits (169), Expect = 5.500e-9
Identity = 108/403 (26.80%), Postives = 167/403 (41.44%), Query Frame = 3
Query:   78 PKLIVEADCSWTKVVAQVASHGRTCLAVADENAPGQAAGRCLFELQKAGINCAMFTGRGAYPTTDGIDEAREMARRIGATCIVSVGSGGTIDTAKAAARLHASSGGCKHFLTSPGGVLMGEGGNSKPRRPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAGAAEEGESLAVALVDPMLCTSLSKAQTVAMAMTALSACVDALLARELALASGVPLQNGDALLDLGRRGIGALAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPAQLVARATGSLLGRHSYPSVCAMVFPHV--------------VGDMLGQANSFSGDAQAAEAIE---RALSLSASLF--LGDGNDGPALLSWLEAQGREWLDFASLSSVDSTISAKDVATNIDML 1229
            P+ +V    +  +V  ++   G T L VA     G+   R    L  AGI+ A++      PT + + EA E  R  G  C+V++G G  IDTAKA   L A+ G  + +     G    EG       PA +  PL A+PT+AG G+ A  R +V   +      L  + E   ++AV   DP L  +L  + T    + AL+  ++A           V +        L R  I  +   LP + A+G +  ARE + +G + AGQ            +AR  G+ L    +     ++ P+V              V  +LG A   + D +AA+A     R L    SL+  L +  + P   ++++A G E  D A  S        K  A  I+ L
Sbjct:   10 PEQVVVGRGAVDEVGDRLGERGSTALIVATGGVFGRYGDRVRDSLAAAGIDAAVYDEVRPDPTVENVREALETYRASGCDCLVALGGGSPIDTAKAVGVLAANGGEIREYAVDRAGY---EG------VPA-SIPPLAAVPTTAGTGSEAT-RSIVISDESTATKFLVVSTEVLPTVAVE--DPELVATLPPSHTAFTGVDALTHAIEAY----------VSVHAWSMSDTLARAAIERVGTALPASWANGDDLDAREAMLVGQLQAGQAFTNASVALVHGMARPFGAQL-HLPHGLANGVLLPYVMEFSRPGAEERYADVARLLGAATDEATDREAAKAAAGAVRELCRDVSLYDYLAEFGEVPDRAAYVDAVG-EMADDAIASGSPDNNPRKPTAAEIEEL 387          
BLAST of mRNA_E_fasciculatus_S2_contig981.17812.1 vs.
Match: Iron-containing (alcohol dehydrogenase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A6N6PES3_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 6.980e-9
Identity = 63/231 (27.27%), Postives = 99/231 (42.86%), Query Frame = 3
Query:  189 AGRCLFELQKAGINCAMFTGRGAYPTTDGIDEAREMARRIGATCIVSVGSGGTIDTAKAAARLHASSGGCKHFLTSPGGVLMGEGGNSKPRRPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAGAAEEGESLAVALVDPMLCTSLSKAQTVAMAMTALSACVDALLARELALASGVPLQNGDALLDLGRRGIGALAEGLPVALADGKNKLARELLTIGSVCAG 881
            AGR    L+ AG+   +F      PTT  +++   +AR  G  CIV +G G ++DTAK          GC   LT+ GG +    G  K  +P    LP +AIPT+AG G+      L+    DE+        +   +  +A++DP L  S     T    + A++  V+          S V  +  +    +       L  G PV +++  N  AR  + +G+  AG
Sbjct:   60 AGRVRASLEAAGLRVTLFDKARENPTTKCVEDCVLVARAAGIDCIVGLGGGSSMDTAK----------GCNFILTN-GGQMKDYWGVGKAMKPM---LPFIAIPTTAGTGSEMQSAALIA---DEITHQKMACLDPNCAARMAILDPTLTLSQPPRVTACTGIDAIAHAVE----------SAVTTKRNELSQKISSEAFKLLVAGFPVVMSEPGNLAARSQMQLGAAYAG 263          
BLAST of mRNA_E_fasciculatus_S2_contig981.17812.1 vs.
Match: Alcohol (dehydrogenase n=2 Tax=Pseudodesulfovibrio TaxID=2035811 RepID=A0A126QSC4_9DELT)

HSP 1 Score: 68.6 bits (166), Expect = 1.280e-8
Identity = 67/224 (29.91%), Postives = 101/224 (45.09%), Query Frame = 3
Query:  210 LQKAGINCAMFTGRGAYPTTDGIDEAREMARRIGATCIVSVGSGGTIDTAKAAARLHASSGGCKHFLTSPGGVLMGEGGNSKPRRPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAGAAEEGESLAVALVDPMLCTSLSKAQTVAMAMTALSACVDALLARELALASGVPLQNGDALLDLGRRGIGALAEGLPVALADGKNKLARELLTIGSVCAG 881
            L K  +   +F      P +D +DEA  + R  G   +V +G G TID+AKA A + A+ G    ++ S      G GG  +P     +ALP+VAIPT+AG G  A+   ++     +    + G   +    A+++VDP L  S+   QT    M A     +A LA     AS +          L    +  +A  LP A+A+G N  AR ++      AG
Sbjct:   57 LSKQDVQTIVFDKIKPNPESDAVDEAAAICRDKGVDFVVGLGGGSTIDSAKAIATMAANKGKYWDYMQS------GSGGGQEPEN---DALPIVAIPTTAGTGTEADPWTVITKSGTDSFEKI-GWGNDATFPALSIVDPELMRSVPPKQTAYTGMDAFFHATEAYLATCRQPASDM----------LALEAVHLIAHTLPQAVAEGDNLEARTIMAWACTAAG 260          
BLAST of mRNA_E_fasciculatus_S2_contig981.17812.1 vs.
Match: Iron-containing (alcohol dehydrogenase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V2N505_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 1.600e-8
Identity = 81/256 (31.64%), Postives = 117/256 (45.70%), Query Frame = 3
Query:  252 GAYPTTDGIDEAREMARRIGATCIVSVGSGGTIDTAKAAARLHASSGGCKHFLTSPGGVL-----MGEGGNSKPRRPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAGAAEEGESLAVALVDPMLCTSLSKAQTVAMAMTALSACVDALLARELALASGVPLQNGDALLDLGRRGIGALAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPAQLVARATGSLLGRHSYPS--VCAMVFPHVV 998
            G  PTT G+      AR  G   ++++G G  ID  KA A +          LT+PG +L     +G G  +   RP    +PLVA+ T+AGAGA      ++  PD +V V +  A        VALVDP L  S+    T A  + AL+  ++A + R+       PL +G       R G+   A  L  A ADG +  AR  +++ ++  G +A+A     A  V    G L G    P   +CA + PHVV
Sbjct:   66 GGEPTTSGVQALAAEARDAGVDHVIAIGGGSVIDAGKAVAAM----------LTNPGDLLDYLEVVGRG-RALAHRP----VPLVAVSTTAGAGAEVTRNAVLKVPDRQVKVSMRHA---WLLPTVALVDPELTASMPPEVTAATGLDALTQLLEAFVGRK-----ANPLTDGFC-----REGLSRAARSLERAWADGGDLTARTDMSLAALLGG-MALANAGLGA--VHGFAGPLGGIIEAPHGVICARLLPHVV 290          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig981.17812.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Fe-ADH6.300e-26289.79domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Iron-containing1.190e-1136.40alcohol dehydrogenase n=1 Tax=Desulfobacteraceae b... [more]
Iron-containing2.320e-1031.25alcohol dehydrogenase n=1 Tax=Pseudodesulfovibrio ... [more]
Alcohol4.710e-1028.05dehydrogenase n=1 Tax=Anaerosolibacter carboniphil... [more]
iron-containing1.210e-927.47alcohol dehydrogenase n=1 Tax=Bradyrhizobium merca... [more]
iron-containing4.070e-929.46alcohol dehydrogenase n=1 Tax=Paucidesulfovibrio l... [more]
Alcohol5.500e-926.80dehydrogenase n=3 Tax=unclassified Halobacteriales... [more]
Iron-containing6.980e-927.27alcohol dehydrogenase n=1 Tax=Verrucomicrobia bact... [more]
Alcohol1.280e-829.91dehydrogenase n=2 Tax=Pseudodesulfovibrio TaxID=20... [more]
Iron-containing1.600e-831.64alcohol dehydrogenase n=1 Tax=Phycisphaerales bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig981contigE_fasciculatus_S2_contig981:4218..8592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score748.4
Seed ortholog evalue1.8e-213
Seed eggNOG ortholog2880.D7FKF1
Model size1863
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.hydroxyacid-oxoacid transhydrogenase activity
EggNOG OGsCOG1454@1,KOG3857@2759
Ec32 ortholog descriptionAlcohol dehydrogenase, iron-type
Ec32 orthologEc-12_002290.1
Cds size1296
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig981.17812.1prot_E_fasciculatus_S2_contig981.17812.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig981 4765..8572 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842624.4859207-UTR-E_fasciculatus_S2_contig981:4217..47641696842624.4859207-UTR-E_fasciculatus_S2_contig981:4217..4764Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig981 4218..4764 -
1696842624.5924926-UTR-E_fasciculatus_S2_contig981:8572..85921696842624.5924926-UTR-E_fasciculatus_S2_contig981:8572..8592Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig981 8573..8592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842624.4983912-CDS-E_fasciculatus_S2_contig981:4764..50151696842624.4983912-CDS-E_fasciculatus_S2_contig981:4764..5015Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig981 4765..5015 -
1696842624.513178-CDS-E_fasciculatus_S2_contig981:5404..55521696842624.513178-CDS-E_fasciculatus_S2_contig981:5404..5552Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig981 5405..5552 -
1696842624.5241358-CDS-E_fasciculatus_S2_contig981:5981..62871696842624.5241358-CDS-E_fasciculatus_S2_contig981:5981..6287Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig981 5982..6287 -
1696842624.5356128-CDS-E_fasciculatus_S2_contig981:6656..68791696842624.5356128-CDS-E_fasciculatus_S2_contig981:6656..6879Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig981 6657..6879 -
1696842624.5467696-CDS-E_fasciculatus_S2_contig981:7238..74081696842624.5467696-CDS-E_fasciculatus_S2_contig981:7238..7408Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig981 7239..7408 -
1696842624.5574977-CDS-E_fasciculatus_S2_contig981:7801..79031696842624.5574977-CDS-E_fasciculatus_S2_contig981:7801..7903Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig981 7802..7903 -
1696842624.5762708-CDS-E_fasciculatus_S2_contig981:8476..85721696842624.5762708-CDS-E_fasciculatus_S2_contig981:8476..8572Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig981 8477..8572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig981.17812.1

>prot_E_fasciculatus_S2_contig981.17812.1 ID=prot_E_fasciculatus_S2_contig981.17812.1|Name=mRNA_E_fasciculatus_S2_contig981.17812.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=432bp
MRCRLVNIRRSFSSRPGPTPKLIVEADCSWTKVVAQVASHGRTCLAVADE
NAPGQAAGRCLFELQKAGINCAMFTGRGAYPTTDGIDEAREMARRIGATC
IVSVGSGGTIDTAKAAARLHASSGGCKHFLTSPGGVLMGEGGNSKPRRPA
GNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAGAAEEGESLAVAL
VDPMLCTSLSKAQTVAMAMTALSACVDALLARELALASGVPLQNGDALLD
LGRRGIGALAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPAQL
VARATGSLLGRHSYPSVCAMVFPHVVGDMLGQANSFSGDAQAAEAIERAL
SLSASLFLGDGNDGPALLSWLEAQGREWLDFASLSSVDSTISAKDVATNI
DMLLAIEEDTDAADRVWSAGGTADMAELIVG*
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mRNA from alignment at E_fasciculatus_S2_contig981:4218..8592-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig981.17812.1 ID=mRNA_E_fasciculatus_S2_contig981.17812.1|Name=mRNA_E_fasciculatus_S2_contig981.17812.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4375bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig981:4218..8592- (Ectocarpus fasciculatus EfasUO2)
AGCAGCAACGGCTGTGTACCATGCGTTGCAGACTGGTGAACATTAGGAGG AGTTTCTCATCTCGCCCTGGCCCTACTCCGAAGTTGATTGTTGAGGCCGA CTGCTCTTGGACCAAGGTAAGCGCCGCTCGCTCCGAATGTGTGACATGGA TGGAAACGCAGGTGAAATCCGAGGTTGTCCCGCGTTTTTGCTGTGTCCGC GGACTACAAGCTCCAGTAGTACATCGGACATCAGTACATCTCGATACATG TGTTAACAGTGTGTGCGGACTCTTCTGTGTGTGCATTGCTGTCGCTCTAT GCGCTTTCTCTCTCTGCCTGAGCAATGTGTTGTTTTACTGCAATGCCTAC AAGATTCTCCCTAGACTGATCTTCTGCGCTGGCTTCACGGGTAGGTCAAG TGTCAAGTGAGAGCTCTCACCCGCCTTTGCATGGCTCGTCAAGTGCTCCT CAACAGGGAGGGTGCCAACAATCAGAGAGACAGGGCCAGGAATGGTCTCG TCGAGAACTTTGTGAGGACGTGACGTGTCGGTATCAGGACTCCCGTCTCC TGTCTCTGTTGGTGGTTGTCCAGCCTCGTAATTCAAATCGGCCGAGGGCG ATCAGTGCCCCCAACAGCAGCAGCTCGTCGGATCACCGGACACTGACCGA CAAAATCCCACCCACCGCTTTGCTCCCTTCGGTCAGCAGGTTGTCGCGCA GGTAGCAAGCCATGGAAGAACGTGCCTGGCAGTTGCCGACGAAAATGCTC CAGGGCAAGCAGCGGGAAGATGCTTGTTCGAGCTGCAAAAGGTGCCAAAA CGGTTAGCCTATTGTACAGCAATGGCAGCCGTTTGTTTGTGTGCATGTGT AGTCCAGCCGTTTGTTTGTGTGCATGTGTAGTCCAAGGGGTAGATGGCTT TTCGCTATCAGCGGTGTTGCGGAAGGGCCTGCACCCCCTCTACGATGTTT TCCTGGAGAAGCTATTCTGCAACATGTGCTTTGTTGGGCTTGGAGGATTT TCGGGGCGGCCTCCGTGTTTCACTGCTGCAAGACCGATAGGCATTCCTAA GTCAGGGCTGTGTCGATGGGGAGGCATGAAGTCCAACAGACAAGCTATAG TGGTTGGGCTCTTCTACAGTATTCGATTCGTTTCATAGCTCTTGCGTCGT TTGCATTATGTTGCTTGCACGCTATCATCCGCAGGCCGGCATCAACTGCG CGATGTTCACGGGGCGGGGCGCCTACCCTACAACCGATGGCATAGACGAG GCACGAGAGATGGCTAGGAGGATAGGGGCGACGTGCATCGTAAGCGTTGG GAGCGGGGGGACAATAGATACTGCCAAGGCCGCAGCAAGGCTGCACGCTA GCAGGTAGGAAGACGATGATGATTGTTCTTCGGAGTGATTGGAATTGGGG CAGCAGCAGCAGCATCAGCATCGGCAGCAGCTGCAACGCGCACTTAACTA TATCGCCCCCGCCACGAAATGATACCGTCGCAAATGGTAGGCATTTCGTG CTCTTCACTTGCTGTTACACGCTTGGACTACTTTTTAGAGATCTCCACTG TGGGCAGAATAAGGTCTACGCTGCGGGTCGATTCCACGAAAAGCAACTTG TCAAACAATACCTACCAGCAGTGGGGGGACTGCACGCCACCTCCCAGAAC TCACACGTATTATTTCTGTAATTGCTGTTCCGGGGTGGTCAAATCTCTTC CTTATTTATATAGCGGCGGGTGCAAACACTTCTTGACGAGCCCCGGTGGC GTGCTCATGGGCGAGGGCGGCAACAGCAAGCCCCGAAGGCCTGCCGGAAA TGCGTTGCCGCTTGTGGCGATACCGACTTCTGCCGGCGCAGGGGCCGCCG CAAACGGGCGGTGTTTGGTTTGGCACCCAGATGACGAGGTGCTGGTGCCG CTGGCTGGGGCAGCGGAGGAGGGGGAGTCCCTGGCGGTGAGTCTGGGGCA TAAGTTGTGCCGATCAACCTAACTTTTTTCTTGCGTAGGCGAATCATGCG TGGAAACATCGCGATGTCGACCTTGATTTCGTTTTGATACCTACACACCT CTTCGGTGACGGCAGTGTACACGATACGGAACTGACGACCTTCCTGTGCT GCGACCATCGAAGCGGGCCACAGCGCAGCATATAGCACAACAGCTGCAAC GTGCAAGGGTTATGGCCCTTTCCCGCAAAAATTATGATGTTCCTCATGTC CCTGTAGGTCATGCAGGAAAGCGACTACGACTGCTGCTGTGGTGCAAGCA TCTGTACGCGCTCACACCACCTTCCCGTCTTTTCCGCATGCACGCCCAGC AACAGGTAGCTCTGGTGGACCCTATGCTCTGCACGTCGCTGAGCAAGGCG CAGACGGTGGCCATGGCGATGACGGCGCTTTCCGCCTGCGTCGATGCCCT GCTAGCGCGGGAGTTGGCCCTGGCCTCCGGCGTACCGCTGCAGAACGGCG ACGCGCTCCTCGATCTCGGGCGGCGCGGCATCGGCGCCTTGGCGGAGGGC TTGCCGGTGGCCCTGGCGGACGGCAAGAACAAGCTGGCGAGGGAGCTGCT GACGATCGGCAGCGTGTGTGCGGGACAGCTTGCTGTCGCCACTCCGGCCC CACCAGCTCAGGTACAGGCGCTGCTGAGACCTTTAGTCGTCTGGCTGTTA GAACACCCGCGGCTGGAAGGAAGTGTAGTCACGGCCCCGCGACGTGGCGG TGCCAACTCGCTCGTGAGAACCACGCTGGTGTGGTCATACGAGATGAGGA AGGACGAGACGCCAGTACATTGCTTCTTTACCCCTGCAATGCGTGGTGCT AGAGTGGATGCCTAGATGCTGTACCGCGAGTGCAGGGCACCTTTATTCCA AGACGAAACGTTCACGTCTATCCTTGAAGGTCAAACGCGAGAGCTGGTTG CGAACATGCTCCACTTCCGACTTCCCGAAGGAGCTCAGCACGTTAGCTGG GCAAGGAGCGTTGATCTGTTGGTTCGACTAAGCAACACAACCATCTTCAT CGTTCGTCTCCCACCCCAACCTTCTTCCTCCGCGCCTCAGCTCGTGGCTC GAGCAACGGGTTCGTTGCTGGGGCGGCATAGTTACCCTTCAGTCTGCGCG ATGGTCTTCCCCCATGTTGTCGGGGACATGCTGGGCCAGGCGAACTCCTT CTCCGGAGATGCTCAAGCTGCGGAGGCCATCGAGCGAGGTGAGCCGAGAG CGAATATCCATCCCAAGAGGCTCTCGATTTTCGACCCTGAACAATTCTCG TCTTTTTTTGCGAACGATGTGTCTGCGGGTGAGCCATTCATTGTCACACT CTGGCCATCCATTGTAGAGTAGGAGCGTTGAAGAGCAGGTGAATCGCAGC GAATGCTTGCTACAGCAGTGGTACCATTTCCCTTGATCGGCCACGATTGT GCCCTGTTGTGTCATATCCTTGAGCGTCTTGCACAAAATCTCAACTAGAT CTAGTTGGAAGCCCCCCCACTTTTAACACTTTCGAGTGTTCCCCCCGGAT AAAAGACCCCGCACGATTGATTCTGAACAAACTTCGTTTCGCTTTTTGCT TTTTCCTCTGTCCCTGCTCTTTTATAGCTCTTTCGCTATCGGCGAGCCTC TTTCTGGGAGATGGCAACGATGGCCCGGCGCTTTTGTCTTGGCTAGAGGC GCAGGGGCGCGAGTGGTTGGATTTCGCTAGCTTGTCTTCGGTGGATTCCA CCATTTCGGCCAAGGACGTTGCGACCAACATCGACATGCTGCTGGCGATC GAAGAAGATACTGACGCGGCGGATAGAGTGTGGAGTGCGGGCGGTACCGC GGATATGGCCGAGCTTATTGTTGGCTGATGAATGTTTGAGAGAGACTTCT TGCACTTACTTCCATTCCTTATTTTATGGTGGTATTAAAACGTGTGTTCA GGGTGTACAGGACAATTGAACGTGCGACTTTTGGCAACTCCTTGAACCAC GAGAATCAACGAATCTTGAATGGGATGTGTAGACTACAGCGGTAAGCTTG CCGCACCAAAGGCGAGTCAGACCTCCAAGGCATCTTTCCCCCGCATGCGA TGTTATTTTGTCGCGATTGTGCGTTTCCCCAACATCCGCTGTCGAGGATG GAAACAGCAACGAAGAGTGACTCGACACCGTAGATACCACATCATGGACA AGCCCAGCACCGCCTGTTGAACTTTGGAACATTTTCTCGTTGAAAGGGAT GTGTTATAGGATTAGAAGAGTGTAGGAGGAACAGAGCAGAGAATGGTTCC TCCCAAGAACCATTCTCGGGGAAACATAACTCCCCGTCCGGGGGAATGCA ACTCCCCGCGGAAGGATAAAAGAGGGGACAGATCTAGCTGTCCTTTGATG TGTGAGGCTCATTCGGAGCACAGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig981:4218..8592-

>mRNA_E_fasciculatus_S2_contig981.17812.1 ID=mRNA_E_fasciculatus_S2_contig981.17812.1|Name=mRNA_E_fasciculatus_S2_contig981.17812.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1296bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig981:4218..8592- (Ectocarpus fasciculatus EfasUO2)
ATGCGTTGCAGACTGGTGAACATTAGGAGGAGTTTCTCATCTCGCCCTGG
CCCTACTCCGAAGTTGATTGTTGAGGCCGACTGCTCTTGGACCAAGGTTG
TCGCGCAGGTAGCAAGCCATGGAAGAACGTGCCTGGCAGTTGCCGACGAA
AATGCTCCAGGGCAAGCAGCGGGAAGATGCTTGTTCGAGCTGCAAAAGGC
CGGCATCAACTGCGCGATGTTCACGGGGCGGGGCGCCTACCCTACAACCG
ATGGCATAGACGAGGCACGAGAGATGGCTAGGAGGATAGGGGCGACGTGC
ATCGTAAGCGTTGGGAGCGGGGGGACAATAGATACTGCCAAGGCCGCAGC
AAGGCTGCACGCTAGCAGCGGCGGGTGCAAACACTTCTTGACGAGCCCCG
GTGGCGTGCTCATGGGCGAGGGCGGCAACAGCAAGCCCCGAAGGCCTGCC
GGAAATGCGTTGCCGCTTGTGGCGATACCGACTTCTGCCGGCGCAGGGGC
CGCCGCAAACGGGCGGTGTTTGGTTTGGCACCCAGATGACGAGGTGCTGG
TGCCGCTGGCTGGGGCAGCGGAGGAGGGGGAGTCCCTGGCGGTAGCTCTG
GTGGACCCTATGCTCTGCACGTCGCTGAGCAAGGCGCAGACGGTGGCCAT
GGCGATGACGGCGCTTTCCGCCTGCGTCGATGCCCTGCTAGCGCGGGAGT
TGGCCCTGGCCTCCGGCGTACCGCTGCAGAACGGCGACGCGCTCCTCGAT
CTCGGGCGGCGCGGCATCGGCGCCTTGGCGGAGGGCTTGCCGGTGGCCCT
GGCGGACGGCAAGAACAAGCTGGCGAGGGAGCTGCTGACGATCGGCAGCG
TGTGTGCGGGACAGCTTGCTGTCGCCACTCCGGCCCCACCAGCTCAGCTC
GTGGCTCGAGCAACGGGTTCGTTGCTGGGGCGGCATAGTTACCCTTCAGT
CTGCGCGATGGTCTTCCCCCATGTTGTCGGGGACATGCTGGGCCAGGCGA
ACTCCTTCTCCGGAGATGCTCAAGCTGCGGAGGCCATCGAGCGAGCTCTT
TCGCTATCGGCGAGCCTCTTTCTGGGAGATGGCAACGATGGCCCGGCGCT
TTTGTCTTGGCTAGAGGCGCAGGGGCGCGAGTGGTTGGATTTCGCTAGCT
TGTCTTCGGTGGATTCCACCATTTCGGCCAAGGACGTTGCGACCAACATC
GACATGCTGCTGGCGATCGAAGAAGATACTGACGCGGCGGATAGAGTGTG
GAGTGCGGGCGGTACCGCGGATATGGCCGAGCTTATTGTTGGCTGA
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