mRNA_E_fasciculatus_S2_contig9771.17767.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9771.17767.1
Unique NamemRNA_E_fasciculatus_S2_contig9771.17767.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9771.17767.1 vs.
Match: Deubiquitinating (enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G6_9PHAE)

HSP 1 Score: 377 bits (967), Expect = 1.460e-115
Identity = 297/457 (64.99%), Postives = 310/457 (67.83%), Query Frame = 1 
Query:    1 AEITEIIPPGNGGGTQARVVFSSYEEAKQSVYLHLEHEWNRLAPALSLTEEEMVGGVALSGDVLAASQKRYKPPRPNPAGRREGVCSSRHAAGLPDGEGRAAGRDHRRPDGDGGGSVERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSAAEGRQPAENATPAAXXXXXXXXASADGLPAPAAPTADPPPLQQMRVQAVAATGAAGGETEGLPAAVPRRVGGGSARIRRFFRGEEPAVESPTAAAVPRRESPAKETTTTGGLKSPVEGRSGEGMGTAAVAAEQGASKPKAGSGRVRKGKLRAGRAAGAGSRKKRAWTLWDLAKPPTVGDRFDCLDYFVSSQTGLSAEKWRGAEVMDVRHANKGTQVLVRFLKWNSKWDRWLSWSQEPERFAPYQSHAPKVAEKASGA 1371
            AE+ EI+P  +GGG QARVVF+SY E KQSVYLHLEHEW+RLAP LSLTEEEM  G +LSG+ LAASQKRYKPPR NP GRREG   SRHAAGL DG   AAGRDHR+PDGDGGGSVER                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            VSAAE R     AT           ASADGLPA   PTADPPPLQ+MRVQA AAT A                             EEPAVES TAAA PR + PAKET TT GL+S  E R  E M  A                          RAAG G+RKK AWTLWDLAKPPTVGDRFDCLDYFVSSQTGLSAEKWRGAEVMDVRHANKGTQVLVRFLK NSKWDRW+S SQEPERFAPYQSHAPKVAEKA GA
Sbjct:  381 AEVAEIVPA-DGGGLQARVVFASYAEEKQSVYLHLEHEWSRLAPTLSLTEEEMARGASLSGEALAASQKRYKPPRANPPGRREG--GSRHAAGLHDGARSAAGRDHRQPDGDGGGSVERPLHQRQREELASEDIRDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------VSAAEDRPADGGAT-----------ASADGLPA---PTADPPPLQEMRVQAEAATKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEPAVESATAAA-PRPDCPAKETMTTNGLQSAAEERGAEAM--AXXXXXXXXXXXXXXXXXXXXXXXXXXRAAGTGARKKPAWTLWDLAKPPTVGDRFDCLDYFVSSQTGLSAEKWRGAEVMDVRHANKGTQVLVRFLKRNSKWDRWISLSQEPERFAPYQSHAPKVAEKAGGA 805
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BLAST of mRNA_E_fasciculatus_S2_contig9771.17767.1 vs.
Match: Deubiquitinating (enzyme A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK1_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 3.330e-66
Identity = 189/372 (50.81%), Postives = 195/372 (52.42%), Query Frame = 1 
Query:  157 MVGGVALSGDVLAASQKRYKPPRPNPAGRREGVCSSRHAAGLPDGEGRAAGRDHRRPDGDGGGSVERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSAAEGRQPAENATPAAXXXXXXXXASADGLPAPAAPTADPPPLQQMRVQAVAATG-AAGGETEGLPAAVPRRVGGGSARIRRFFRGEE-----PAVESPTAAAVPRRESPAKETTTTGGLKSPVEGRSGEGMGTAAVAAEQGASKPKAGSGRVRKGKLRAGRAAGAGSRKKRAWTLWDLAKPPTVGDRFDCLDYFVSSQTGLSAEKWRGAEVMDVRHANKGTQVLV 1254
            M  GVALSG+ LAASQKRYKP    P GRREG  SSRHAAGL DG   AAG DHRRPDGDGGGSVER                                                      XXXXXX                  VSAAEGR PA+              ASAD LPA   PT DPPPLQ+MRV AVAAT  A GG  EGLPAAVPR                      PAVES TAAA PR + PAKETT T GL+S  E RS E M                             RAAG G+RKKRAW LWDLAKPPTVGDRFDCLDYFVSSQTGLSAEKWRGAEVMDVRHANKGTQVLV
Sbjct:    1 MARGVALSGEALAASQKRYKPXXXXPPGRREG--SSRHAAGLHDGARGAAGWDHRRPDGDGGGSVERPPHQRQREESGSEDVRDSGSFCKGGGGCSKTTDVANVTAALKLALAAEQGGDTSXXXXXXSRHGAGAGAG--------VSAAEGR-PADGG----------GTASADVLPA---PTGDPPPLQEMRVHAVAATKKAVGGGAEGLPAAVPRXXXXXXXXXXXXXXXXXXXXXXPAVESATAAA-PRPDCPAKETTATNGLQSAAEERSAEAMXXXXXXXXXXXXXXXXXX--XXXXXXXXXRAAGTGARKKRAWALWDLAKPPTVGDRFDCLDYFVSSQTGLSAEKWRGAEVMDVRHANKGTQVLV 345
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9771.17767.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Deubiquitinating1.460e-11564.99enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
Deubiquitinating3.330e-6650.81enzyme A n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9771contigE_fasciculatus_S2_contig9771:1055..4223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score244.2
Seed ortholog evalue1.2e-61
Seed eggNOG ortholog2880.D8LLK1
Model size1371
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsKOG2605@1,KOG2605@2759
Cds size1371
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842620.3590727-CDS-E_fasciculatus_S2_contig9771:1054..11741696842620.3590727-CDS-E_fasciculatus_S2_contig9771:1054..1174Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9771 1055..1174 -
1696842620.3703814-CDS-E_fasciculatus_S2_contig9771:1850..19281696842620.3703814-CDS-E_fasciculatus_S2_contig9771:1850..1928Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9771 1851..1928 -
1696842620.381541-CDS-E_fasciculatus_S2_contig9771:3050..42231696842620.381541-CDS-E_fasciculatus_S2_contig9771:3050..4223Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9771 3051..4223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9771.17767.1prot_E_fasciculatus_S2_contig9771.17767.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9771 1055..4223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9771.17767.1

>prot_E_fasciculatus_S2_contig9771.17767.1 ID=prot_E_fasciculatus_S2_contig9771.17767.1|Name=mRNA_E_fasciculatus_S2_contig9771.17767.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=457bp
AEITEIIPPGNGGGTQARVVFSSYEEAKQSVYLHLEHEWNRLAPALSLTE
EEMVGGVALSGDVLAASQKRYKPPRPNPAGRREGVCSSRHAAGLPDGEGR
AAGRDHRRPDGDGGGSVERPPHQRRQREESGSEDVVRDSSSVGVGGGAGG
GCSKTTDVANVTAALKLALAAEQGGDTSSSSSSGGSSSRHGGGGGGGVSA
AEGRQPAENATPAAGAADGGGTASADGLPAPAAPTADPPPLQQMRVQAVA
ATGAAGGETEGLPAAVPRRVGGGSARIRRFFRGEEPAVESPTAAAVPRRE
SPAKETTTTGGLKSPVEGRSGEGMGTAAVAAEQGASKPKAGSGRVRKGKL
RAGRAAGAGSRKKRAWTLWDLAKPPTVGDRFDCLDYFVSSQTGLSAEKWR
GAEVMDVRHANKGTQVLVRFLKWNSKWDRWLSWSQEPERFAPYQSHAPKV
AEKASGA
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mRNA from alignment at E_fasciculatus_S2_contig9771:1055..4223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9771.17767.1 ID=mRNA_E_fasciculatus_S2_contig9771.17767.1|Name=mRNA_E_fasciculatus_S2_contig9771.17767.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3169bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9771:1055..4223- (Ectocarpus fasciculatus EfasUO2)
GCGGAAATCACCGAAATCATCCCCCCGGGGAACGGAGGCGGGACACAGGC
GCGGGTGGTCTTTTCTTCCTACGAGGAGGCGAAGCAGAGCGTCTACCTTC
ACCTCGAGCACGAGTGGAACCGGCTAGCCCCCGCGCTGTCCCTCACGGAG
GAAGAGATGGTCGGGGGCGTGGCGCTGTCGGGGGACGTCCTGGCCGCGAG
CCAGAAGCGGTATAAGCCGCCGCGGCCCAACCCCGCCGGCCGCCGAGAGG
GTGTATGTAGTAGCCGACACGCCGCGGGGTTGCCTGACGGGGAGGGGCGT
GCTGCTGGGCGGGATCATCGCCGGCCGGACGGTGACGGGGGTGGTAGCGT
AGAGAGACCGCCCCATCAGCGGCGGCAGCGGGAAGAGTCGGGGAGCGAGG
ACGTCGTCCGTGATAGTAGTAGTGTCGGGGTTGGCGGAGGGGCGGGGGGG
GGTTGCAGCAAGACCACTGACGTGGCCAACGTTACGGCGGCGCTGAAGCT
GGCACTGGCGGCCGAGCAAGGCGGCGACACGAGCAGCAGCAGCAGCAGCG
GCGGCAGCAGCAGCAGGCACGGCGGCGGCGGCGGCGGCGGCGTCTCAGCA
GCCGAAGGACGACAGCCGGCGGAGAACGCGACTCCGGCTGCTGGGGCGGC
GGACGGCGGCGGCACGGCATCGGCTGACGGTTTACCGGCGCCGGCGGCGC
CGACCGCTGACCCACCACCGCTGCAGCAAATGCGAGTGCAAGCGGTAGCG
GCGACGGGAGCAGCGGGCGGTGAGACGGAAGGCTTGCCGGCGGCAGTGCC
GCGTCGCGTCGGTGGTGGCAGCGCAAGGATAAGAAGGTTCTTCCGCGGCG
AGGAACCCGCCGTCGAATCGCCGACGGCCGCCGCCGTGCCTCGACGAGAG
AGCCCTGCAAAGGAGACGACGACGACCGGCGGACTAAAGTCGCCGGTAGA
GGGGCGGAGCGGCGAGGGTATGGGTACGGCGGCGGTAGCTGCGGAGCAGG
GGGCGAGCAAGCCGAAGGCGGGGAGCGGTAGAGTTAGGAAGGGGAAGCTG
AGGGCGGGGCGGGCAGCAGGCGCCGGCTCGCGGAAGAAGCGGGCGTGGAC
GCTGTGGGACTTGGCCAAGCCGCCAACCGTTGGCGATCGCTTCGATTGCC
TGGATTACTTCGTCAGCAGCCAGGTGCGGTTAGACCCCCCGACCCTACAA
TGTACCTGATTGAGTGGGCGTGCTAGACGTCGGTGTGTGTCTATGTTTGC
TTCGTGTGTGTGCGTATGTCTGCACCCCGCCGCCTCCTGTTCTGGACGTA
ACAGTCGAGTTGGGGAAGAAACGGAAAGTATTTTTACTTGTGTGTCTGGT
GGACCCCCAGAGGGCGTGTGACAGACTCGGATTTGGGCACCGCCTCCGCC
CCGGCCCCGTCCTGGTCGGCTTCAAGTTTTATTCGGGATGGAGGCTTTTT
GTTTTCCTCGGCCATGATTGTGCCGCTGTTGTTCCGAACAGAGGGCAAGG
CGCGAGGCTGGCCTATCCCGCCCATAGATCTGGTGGGGTAGTGGGCTCTA
CTTGATCGATGTTCTAGATGTCTTGATCGTCTTCATCGGACATGGTGATC
AGTTTTGACGTTATCTACCGGAGTAGTAGTCTAGCCTTTGGGTAGCAGTC
TTTGTTTTTTTATGACCTGAGTTGGCATGGTTTGCTGGAGGCATCAACTC
CAGAAATGTTGATCCCCTGGGCTAATCAACGGGACGTATGCATAGGCCTT
GAATTGTTGAGAGTCGTCGGGCAGTATTTAATATGTGGTATGTATGGGCC
GAGATCGTGCCGTAGTGACGAGCTGGTGTTGTGTGCGCAGCTGGTGCAGC
AGAGACAGATTCCGTCGGGAAGAGTGTGGATTCTCTTGTCTAGAGGGGGG
AGAGTTTTGATGCCTTTTTGCCTCTCTCTTTTTGTCGTTCCTGGAGCAAA
ATCCCGTCGTGAGAGTGCGAACGCCGGTGTACTGTTGTACGGTTGTACCA
GGATGGTTGGCAGGGGGGGGGGCGACGTGAGGATGAAACGAACGCTACAG
CAGTAGCGCAACAGTGGAAGGTAGAGCTGTGACTTCTTCTTTCTTCGTCT
CTCACTCCTCTCGTGTTTCGCATCTCTCTCGCTCTCCCTCTCTGCCGACC
GTGAATATTTTGTTTTTTATTCCTGTTTTTTGTTCTTGTTCTTCTTTCGC
TCTTCGTTCCGACCGGCGGCGTTTCGTTTTCGCTTCTTTTTTGCTCTTCG
TCCTCCTGTCTTCCCGCCGTGCCCCATACCCCGGTCGGTTGGTAGACCGG
TCTGAGCGCTGAGAAATGGAGAGGGGCCGAGGTGATGGATGTCCGGCACG
CCAACAAGGGAACGCAAGTCTTGGTAAGCGCCGCGTGGATACGGGGTGAA
CGAACGACCCCCGCCCCGAGGTCTGTTGTACGGTCTGTTAATGGCTCTTC
GGGTCTGGCCGAATGTTGAACGGTAGCTCCTCCGCACCCAGGATGTGTCA
CACACCCGTGGCCGACCCGACCCGACCCAACCCAACCCTAGCCCTCGCCC
ACAGCCAACGCACGGCCTAGCAGGCGAGCACGCGGCTGCGCAGCCTTATC
GGAATGCGGAACAGAGAGAGGGCGCACGAGAGGGATCGGCCGCCCAAACC
AACGCTCGACCAATCTGAGGGTGTAACCGCCCGTAGGGAAGAGTCGCTAA
CAGACCGAAACAACTACTGCCAGCCCCCGCCTACCCGCCTTGTGCGAGCA
ACCGTTTCCAACCGTTTCCCCCCCCGAAGCGGCGTAGAGACGGCCGCTAT
ATGCATGCGAGTTTGCTTAATCCTTGTAAGCTTGTTGATTGGAAACAAGA
ACGAGCAAGCGAAACAAAAAAAATTGTCCAAATGTTAACCTTTGGTTACA
GCGGGCGGTGCCTTCGACATAGCTTGCCATGGGTCACACAGTGAATCGAG
CTCTCGACATTTGTTCTCGCCCATCTGTCAGTAATATCAGCCTACCTTGT
TTTTGCTCCTCCTAAGCCCCTCGTAAAACATGCCACTGCTTCTCACCAGG
TGCGTTTCTTAAAGTGGAACTCAAAGTGGGATAGATGGCTATCCTGGTCG
CAGGAGCCGGAGCGCTTCGCCCCTTACCAGTCGCATGCCCCGAAAGTGGC
AGAGAAAGCAAGCGGTGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9771:1055..4223-

>mRNA_E_fasciculatus_S2_contig9771.17767.1 ID=mRNA_E_fasciculatus_S2_contig9771.17767.1|Name=mRNA_E_fasciculatus_S2_contig9771.17767.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1371bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9771:1055..4223- (Ectocarpus fasciculatus EfasUO2)
GCGGAAATCACCGAAATCATCCCCCCGGGGAACGGAGGCGGGACACAGGC
GCGGGTGGTCTTTTCTTCCTACGAGGAGGCGAAGCAGAGCGTCTACCTTC
ACCTCGAGCACGAGTGGAACCGGCTAGCCCCCGCGCTGTCCCTCACGGAG
GAAGAGATGGTCGGGGGCGTGGCGCTGTCGGGGGACGTCCTGGCCGCGAG
CCAGAAGCGGTATAAGCCGCCGCGGCCCAACCCCGCCGGCCGCCGAGAGG
GTGTATGTAGTAGCCGACACGCCGCGGGGTTGCCTGACGGGGAGGGGCGT
GCTGCTGGGCGGGATCATCGCCGGCCGGACGGTGACGGGGGTGGTAGCGT
AGAGAGACCGCCCCATCAGCGGCGGCAGCGGGAAGAGTCGGGGAGCGAGG
ACGTCGTCCGTGATAGTAGTAGTGTCGGGGTTGGCGGAGGGGCGGGGGGG
GGTTGCAGCAAGACCACTGACGTGGCCAACGTTACGGCGGCGCTGAAGCT
GGCACTGGCGGCCGAGCAAGGCGGCGACACGAGCAGCAGCAGCAGCAGCG
GCGGCAGCAGCAGCAGGCACGGCGGCGGCGGCGGCGGCGGCGTCTCAGCA
GCCGAAGGACGACAGCCGGCGGAGAACGCGACTCCGGCTGCTGGGGCGGC
GGACGGCGGCGGCACGGCATCGGCTGACGGTTTACCGGCGCCGGCGGCGC
CGACCGCTGACCCACCACCGCTGCAGCAAATGCGAGTGCAAGCGGTAGCG
GCGACGGGAGCAGCGGGCGGTGAGACGGAAGGCTTGCCGGCGGCAGTGCC
GCGTCGCGTCGGTGGTGGCAGCGCAAGGATAAGAAGGTTCTTCCGCGGCG
AGGAACCCGCCGTCGAATCGCCGACGGCCGCCGCCGTGCCTCGACGAGAG
AGCCCTGCAAAGGAGACGACGACGACCGGCGGACTAAAGTCGCCGGTAGA
GGGGCGGAGCGGCGAGGGTATGGGTACGGCGGCGGTAGCTGCGGAGCAGG
GGGCGAGCAAGCCGAAGGCGGGGAGCGGTAGAGTTAGGAAGGGGAAGCTG
AGGGCGGGGCGGGCAGCAGGCGCCGGCTCGCGGAAGAAGCGGGCGTGGAC
GCTGTGGGACTTGGCCAAGCCGCCAACCGTTGGCGATCGCTTCGATTGCC
TGGATTACTTCGTCAGCAGCCAGACCGGTCTGAGCGCTGAGAAATGGAGA
GGGGCCGAGGTGATGGATGTCCGGCACGCCAACAAGGGAACGCAAGTCTT
GGTGCGTTTCTTAAAGTGGAACTCAAAGTGGGATAGATGGCTATCCTGGT
CGCAGGAGCCGGAGCGCTTCGCCCCTTACCAGTCGCATGCCCCGAAAGTG
GCAGAGAAAGCAAGCGGTGCC
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