mRNA_E_fasciculatus_S2_contig9764.17759.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9764.17759.1
Unique NamemRNA_E_fasciculatus_S2_contig9764.17759.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9764.17759.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL54_9PHAE)

HSP 1 Score: 523 bits (1348), Expect = 1.360e-185
Identity = 251/266 (94.36%), Postives = 257/266 (96.62%), Query Frame = 1
Query:    4 KGLRFLEAADFDVPAEDRLAFERNGHAVTRGVLSSQQLKALRPSIVQAFELQEMNALRQKVSVWFGDDTASELETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPFRETIEQVVLSPRLAHIAAQLLGCQRVRLYQDSTFCKRTGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKRDGGSPLVFASRSHRDFALNHWRDPRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRDTPRVALAVSYFRDGTCLLSDTAG 801
            KGL FLEAADFDVPAEDRLAFERNGHAVTRGV SS+QL ALRPSIVQAFELQEMNALRQKVSVWFGDD ASELETAPQLRARLKRL PEEVPFLQVFNMFRKDGPFRETIE+VVLSPRLAHIAAQLLGCQR+RLYQDSTFCKR GDG TRWHSDLNMAPLDCNDFVTAWIPLEE+PAKR+GGSPLVFASRSHRDFALNHWRD RLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRR+T RVALAVSYFRDGTCLLSDTAG
Sbjct:   92 KGLTFLEAADFDVPAEDRLAFERNGHAVTRGVFSSKQLNALRPSIVQAFELQEMNALRQKVSVWFGDDDASELETAPQLRARLKRLTPEEVPFLQVFNMFRKDGPFRETIERVVLSPRLAHIAAQLLGCQRLRLYQDSTFCKRPGDGQTRWHSDLNMAPLDCNDFVTAWIPLEEIPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRETRRVALAVSYFRDGTCLLSDTAG 357          
BLAST of mRNA_E_fasciculatus_S2_contig9764.17759.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY1_ECTSI)

HSP 1 Score: 350 bits (897), Expect = 7.420e-120
Identity = 160/168 (95.24%), Postives = 165/168 (98.21%), Query Frame = 1
Query:  298 MFRKDGPFRETIEQVVLSPRLAHIAAQLLGCQRVRLYQDSTFCKRTGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKRDGGSPLVFASRSHRDFALNHWRDPRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRDTPRVALAVSYFRDGTCLLSDTAG 801
            MFRKDGPFRETIE+VVLSPRLAH+AAQLLGCQRVRLYQDSTFCKR GDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKR+GGSPLVFASRSHRDFALNHWRD RLREDL+GRYREKDHAPLAAGDITWHHGWTLHSS GNRR+TPRVALAVSYFRDGTCLLSDTAG
Sbjct:    1 MFRKDGPFRETIERVVLSPRLAHVAAQLLGCQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLSGRYREKDHAPLAAGDITWHHGWTLHSSLGNRRETPRVALAVSYFRDGTCLLSDTAG 168          
BLAST of mRNA_E_fasciculatus_S2_contig9764.17759.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ4_9STRA)

HSP 1 Score: 270 bits (691), Expect = 3.250e-86
Identity = 139/285 (48.77%), Postives = 173/285 (60.70%), Query Frame = 1
Query:   10 LRFLEAADFDVPAEDRLAFERNGHAVTRGVLSSQQLKALRPSIVQAFELQEMNALRQKVSVWFGDDTASELETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPFRETIEQVVLSPRLAHIAAQLLGCQRVRLYQDSTFCKRTGDGPTRWHS----------------------DLNMAPLDCNDFVTAWIPLEEVPAKRDGGSPLVFASRSHRDFALNHWRDPRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRDTPRVALAVSYFRDGTCLLSDTA 798
            + FL  A   V   + L FER GH +TRG+ S+Q++  L P I+  F   E++AL+QKV+V  G+  A    +A  L   L++L P+E+PFLQVFNM+R  G     +  +V S RLA  AA LLGCQ VR+YQDSTF KR+GDGPT WHS                      DLNMAP D ND VTAW+PL  + A  DGGS LVFASRSHRDFALN+W+DP  +EDL+ RY E     +  GD +WHHGW LHS+ GN     RVA  VSY  DG  +L + A
Sbjct:   34 MNFLNVAQ-PVTCAEMLKFERGGHLLTRGLFSAQEMALLSPHIMAGFRALELSALQQKVTVLLGEGAAPPGASAEDLLVLLRQLPPDEIPFLQVFNMWRTPGAHAAAVSALVRSRRLARHAAALLGCQAVRVYQDSTFVKRSGDGPTNWHSGINAQLWAAAAAPLRRHERNRGDLNMAPFDTNDMVTAWLPLTHIAACEDGGSGLVFASRSHRDFALNYWQDPHAQEDLSERYDETPQLAMEPGDCSWHHGWVLHSANGNDTPETRVAFTVSYIADGARMLGEGA 317          
BLAST of mRNA_E_fasciculatus_S2_contig9764.17759.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR24_9STRA)

HSP 1 Score: 234 bits (598), Expect = 4.440e-72
Identity = 131/268 (48.88%), Postives = 160/268 (59.70%), Query Frame = 1
Query:    7 GLRFLEAADFDVPAEDRLAFERNGHAVTRGVLSSQQLKALRPSIVQAFELQEMNALRQKVSVWFGDDTASE------LETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPFRETIEQVVLSPRLAHIAAQLLGCQRVRLYQDSTFCKRTGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKRDGGSPLVFASRSHRDFALNHWRDPR-LREDLTGRYRE--KDHAPLAAGDITWHHGWTLHSSPGNRRDTPRVALAVSYFRDGTCL 783
            GL F  A    +P +  LAFER GH  TRG+LS+Q++ +LR  + +AF  +E  A      V  GD+   +      LET  +    L+    E +PFLQVFN +R+D      + + V  PRLA +AAQLLG  RVRLYQDS F KR GDG TRWHSDL+MAP D ND VT WIPL+ VPA+ DGG+ L FAS SHRDFAL  W  P    +D + RY +    H  L  GD TWHHGW LHSSP N     R+AL VS+  DG  L
Sbjct:   73 GLTFAAAPA--LPTDTVLAFEREGHIATRGLLSTQEMASLRGPVEEAFRRREFEAWFHSARVMLGDENLVDDFGLPLLETTEECIEALEAHGCE-LPFLQVFNSWREDP----AVAEFVCGPRLAAVAAQLLGVSRVRLYQDSMFLKRPGDGATRWHSDLHMAPFDTNDLVTCWIPLDPVPAQEDGGTGLTFASGSHRDFALAFWSRPHETGKDFSARYDDCLASHGALDPGDATWHHGWVLHSSPPNDSPDRRLALTVSFVADGARL 333          
BLAST of mRNA_E_fasciculatus_S2_contig9764.17759.1 vs.
Match: Uncharacterized (protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNY2_EMIHU)

HSP 1 Score: 227 bits (578), Expect = 1.660e-69
Identity = 128/251 (51.00%), Postives = 153/251 (60.96%), Query Frame = 1
Query:   58 LAFERNGHAVTRGVLSSQQLKALRPSIVQAFELQEMNALRQKVSVWFGDDTASELE----TAPQ-LRARLKRLAPE-EVPFLQVFNMFRKDGPFRETIEQVVLSPRLAHIAAQLLGCQRVRLYQDSTFCKRTGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKRDGGSPLVFASRSHRDFALNHWR-DPRLREDLTGR-YREKDHAPLAAGDITWHHGWTLHSSPGNRRDTPRVALAVSYFRDGTCLL 786
            L FER GH  TR +L      AL   + + +  +E  ALRQKV V  GDD  +  E     +P  LR  L+   PE  VPF+Q+FN++R        + ++  SP LA  AA LLG +RVRLYQDS F KR GDGPT WHSDL+MAPLD N FVT W+PL +V A  DGGS LVFAS SHRD ALN W  DPR   D + R Y  +D   L AGD TWHHGW LHS+  N  D PR A+AVS++ DG   L
Sbjct:    2 LEFERTGHVRTRKLLPGAATSALSKEVDRLYTERESEALRQKVRVLLGDDRLARAEHKSAASPHVLRRILREELPEGAVPFMQLFNLWRTSP----MVHELWRSPALAGTAASLLGVERVRLYQDSYFLKRPGDGPTHWHSDLSMAPLDTNSFVTCWLPLHDVAAPDDGGSSLVFASGSHRDVALNFWHGDPRRPVDASTRGYPLRDGGALRAGDATWHHGWVLHSAAPNMGDVPRRAVAVSFYADGASRL 248          
BLAST of mRNA_E_fasciculatus_S2_contig9764.17759.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRB8_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.190e-68
Identity = 117/269 (43.49%), Postives = 162/269 (60.22%), Query Frame = 1
Query:    4 KGLRFLEAADFDVPAEDRLAFERNGHAVTRGVLSSQQLKALRPSIVQAFELQEMNALRQKVSVWFGDDTASELETAPQLRARLKRLA-PEEVPFLQVFNMFRKDGPFRETIEQVVLSPRLAHIAAQLLGCQRVRLYQDSTFCKRTGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKRDGGSPLVFASRSHRDFALNHWRDPRL--REDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRDTPRVALAVSYFRDGTCLLSDTAG 801
            + L  LEA    +P    L++ER GH +TR + +S++LK     +  AFE +++ A RQKV V  G +   + +T  +    ++    P+ VPFLQ FN +R+   F++ + ++ L+ R A +AA+LL   RVRLYQDSTF KR GDGPT WHSDLNMAP   N+ VT W+PL  +P + +GG+ L+FAS SHRDFAL+ W D R   R DL GRY    +  +  GD TWHHGW LHSS  N  +  R+A  + +  DG  +L    G
Sbjct:  106 RSLPSLEAPYPPIPTTQLLSWEREGHTLTRSLCTSEELKDYAKVVRAAFEREKLAAFRQKVRVLLGPEAFQDCQTLEECEEVMEEYVDPDAVPFLQTFNGWRQ---FQD-VRRLALAKRFARVAAELLNVPRVRLYQDSTFLKRVGDGPTLWHSDLNMAPFHTNEAVTMWLPLTPIPPEEEGGTGLLFASGSHRDFALSFWEDARGGGRRDLEGRYALDSYGRMEVGDATWHHGWCLHSSGPNDLEEDRMAFTLCFVADGAEMLEGGEG 370          
BLAST of mRNA_E_fasciculatus_S2_contig9764.17759.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNK7_9STRA)

HSP 1 Score: 223 bits (567), Expect = 4.560e-68
Identity = 126/265 (47.55%), Postives = 155/265 (58.49%), Query Frame = 1
Query:   34 FDVPAEDRLAFERNGHAVTRGVLSSQQLKALRPSIVQAFELQEMNALRQKVSVW-------FGDDTASELETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPFRETIEQVVLSPRLAHIAAQLLGCQRVRLYQDSTFCKRTGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKRDGGSPLVFASRSHRDFALNHWRDPRLR-EDLTGRYREK--DHAPLAAGDITWHHGWTLHSSPGNRRDTPRVALAVSYFRDGTCLLSDTA 798
            + +  E  L FERNGH  TR +L   ++K+++ ++  AF L E +A RQ   V        FG       E A   RA L+     E+PFLQ  N++R D      +E +V   +    AAQLLG + VRLYQDS F KR  DGPTRWHSDL+M+PLD N  VT W+ L+ VP++ DGGS L FAS SHRDFAL    DPR    DLT RY E   DH  L  GD TWHHGWTLHSSP N  D+PR+A  VS+  DG  +L   A
Sbjct:   37 YPLSVERVLEFERNGHICTRCLLEDSEVKSVKQTVESAFLLLEPDAWRQSARVMLEGVEDDFGLPLVKNFEDAADCRAVLEE-HDVELPFLQAMNLWRNDPK----VEAIVR--KFGKTAAQLLGVESVRLYQDSVFYKRVDDGPTRWHSDLHMSPLDTNSMVTMWLALDHVPSQEDGGSALTFASGSHRDFALAFHYDPRDETNDLTERYAEALCDHGELRPGDATWHHGWTLHSSPPNELDSPRLAFTVSFIADGARILGAEA 294          
BLAST of mRNA_E_fasciculatus_S2_contig9764.17759.1 vs.
Match: Hypothetical (protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QAH8_9EUKA)

HSP 1 Score: 209 bits (532), Expect = 4.970e-63
Identity = 119/225 (52.89%), Postives = 139/225 (61.78%), Query Frame = 1
Query:  166 NALRQKVSVWFGDDTASELE---TAPQ------LRARLKRLAPEEVPFLQVFNMFRKDGPFRETIEQVVLSPRLAHIAAQLLGCQR---VRLYQDSTFCKRTGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKRDGGSPLVFASRSHRDFALNHWR-DPRLREDLTGR-YREKDHAPLAAGDITWHHGWTLHSSPGNRRDTPRVALAVSYFRDGTCLLSDTA 798
            +A  QKV V  GDD   EL    TA +      LR  L RL    +PFLQVFN++R D      +  ++ S  +A  AAQLLG +R   +RLYQDS F KR GDGPT WHSDL MAPLD N FVTAWIPL+ VP    GGS LVFA  SHRD AL  W  DPR+ EDL+GR Y E +   +A GD+T+HHGWTLH +P N   TPR AL  SYF DG   L  +A
Sbjct:   10 DAYEQKVRVLLGDDVLQELHRHSTASRKRRLHLLREALDRLPGGSIPFLQVFNLWRTDV----AVLNLLRSAAVAGSAAQLLGAKRGDRLRLYQDSLFVKRVGDGPTHWHSDLAMAPLDTNAFVTAWIPLQPVPPPNKGGSALVFAGGSHRDVALPFWHGDPRVCEDLSGRGYTEHEPEAMAVGDVTFHHGWTLHFAPPNTGPTPRRALTASYFLDGALRLGGSA 230          
BLAST of mRNA_E_fasciculatus_S2_contig9764.17759.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W4J6_TETOB)

HSP 1 Score: 209 bits (533), Expect = 7.830e-63
Identity = 115/253 (45.45%), Postives = 152/253 (60.08%), Query Frame = 1
Query:   40 VPAEDRLAFERNGHAVTRGVLSSQQLKALRPSIVQAFELQEMNALRQKVSVWFGD--DTASELETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPFRETIEQVVLSPRLAHIAAQLLGCQRVRLYQDSTFCKRTGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKRDGGSPLVFASRSHRDFALNHWRDPRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRDTP-RVALAVSYFRDGTCLLS 789
            +P    L FER G  +T+G+L  QQL+ ++  I Q  + +++ ALR +V V   D  D    + +  Q  A +++    E+ FLQ FN+ R +G     I ++V S +LA  AAQLL  +++RLYQD  F K  G   T WHSDL MAPLD NDFVTAWIPL  V    +G S L+FA  SHRDFAL  W D + R+     Y  +D  P+  GD++WHHGWTLH +P    DTP R+ALAVSYF DG  LL+
Sbjct:   51 LPDRSLLQFERKGWVLTQGLLPQQQLQQVKGCIEQVVQQRKLEALRHRVRVLCSDCQDQLGSIRSEAQALALIQQHGSSELGFLQFFNLHRSEG----LIAELVRSKQLAATAAQLLAAKKLRLYQDCVFLKEPGYAETNWHSDLRMAPLDANDFVTAWIPLRPVGGA-EGDSGLLFAEGSHRDFALPFWHDLKGRDLGDRSYPLQDAGPMQVGDVSWHHGWTLHCAPPQPPDTPQRLALAVSYFADGARLLA 298          
BLAST of mRNA_E_fasciculatus_S2_contig9764.17759.1 vs.
Match: Uncharacterized (protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJL8_KLENI)

HSP 1 Score: 199 bits (506), Expect = 2.290e-58
Identity = 116/262 (44.27%), Postives = 150/262 (57.25%), Query Frame = 1
Query:   13 RFLEAADFDVPA--EDRLAFERNGHAVTRGVLSSQQLKALRPSIVQAFELQEMNALRQKVSVWFGDDTASELETAPQLRARLKRLAPEEVPFLQVFNMFRKDGPFRETIEQVVLSPRLAHIAAQLLGCQRVRLYQDSTFCKRTGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKRDGGSPLVFASRSHRDFALNHWRDPRLREDLTGR-YREKDHAPLAAGDITWHHGWTLH-SSPGNRRDTPRVALAVSYFRDGTCLL 786
            R+ EA D +V    +  L FER GH + R ++  + ++     I  A   QE+ A R +V+V      AS +    Q  A L   A +E+ FLQ+FN+ R    +  T+ ++V SPRLA +AA LLG  +VRLYQD  F K+ G G T WHSDLNM PLD N FVT WIPL    A  +  S L+FAS SHRDF+L +W+D    EDL  R Y  +DH  L  GD T HHGW LH +SP       R AL++SYF DG  +L
Sbjct:   66 RWKEAVDTEVKVSLKQLLQFERTGHVLVRQLVPEEAMEECAEEIWAAAREQELEAYRHRVAVLCPGVDASSVSNIEQALAVLAEHATDELGFLQMFNLHR----YSRTVRELVTSPRLARVAADLLGASKVRLYQDCLFLKQPGFGATNWHSDLNMVPLDTNAFVTLWIPLR---AMDEDDSGLLFASGSHRDFSLAYWQDLEGMEDLERREYLLEDHGALDLGDATCHHGWCLHYASPQPEDSDARAALSISYFADGARVL 320          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9764.17759.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.360e-18594.36protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.420e-12095.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.250e-8648.77protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical4.440e-7248.88protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Uncharacterized1.660e-6951.00protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID... [more]
Uncharacterized2.190e-6843.49protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Hypothetical4.560e-6847.55protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical4.970e-6352.89protein n=1 Tax=Coccolithus braarudii TaxID=221442... [more]
Uncharacterized7.830e-6345.45protein n=1 Tax=Tetradesmus obliquus TaxID=3088 Re... [more]
Uncharacterized2.290e-5844.27protein n=1 Tax=Klebsormidium nitens TaxID=105231 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9764contigE_fasciculatus_S2_contig9764:1627..5391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score348.6
Seed ortholog evalue2.6e-93
Seed eggNOG ortholog2880.D7FZY1
Model size801
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Phytanoyl-CoA dioxygenase (PhyH)
EggNOG OGs29XGT@1,2RXRT@2759
Cds size801
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842619.8266492-CDS-E_fasciculatus_S2_contig9764:1626..17711696842619.8266492-CDS-E_fasciculatus_S2_contig9764:1626..1771Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9764 1627..1771 +
1696842619.8380878-CDS-E_fasciculatus_S2_contig9764:2595..27381696842619.8380878-CDS-E_fasciculatus_S2_contig9764:2595..2738Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9764 2596..2738 +
1696842619.8601294-CDS-E_fasciculatus_S2_contig9764:3102..32091696842619.8601294-CDS-E_fasciculatus_S2_contig9764:3102..3209Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9764 3103..3209 +
1696842619.873266-CDS-E_fasciculatus_S2_contig9764:3656..39341696842619.873266-CDS-E_fasciculatus_S2_contig9764:3656..3934Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9764 3657..3934 +
1696842619.888501-CDS-E_fasciculatus_S2_contig9764:5263..53911696842619.888501-CDS-E_fasciculatus_S2_contig9764:5263..5391Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9764 5264..5391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9764.17759.1prot_E_fasciculatus_S2_contig9764.17759.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9764 1627..5391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9764.17759.1

>prot_E_fasciculatus_S2_contig9764.17759.1 ID=prot_E_fasciculatus_S2_contig9764.17759.1|Name=mRNA_E_fasciculatus_S2_contig9764.17759.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=267bp
TKGLRFLEAADFDVPAEDRLAFERNGHAVTRGVLSSQQLKALRPSIVQAF
ELQEMNALRQKVSVWFGDDTASELETAPQLRARLKRLAPEEVPFLQVFNM
FRKDGPFRETIEQVVLSPRLAHIAAQLLGCQRVRLYQDSTFCKRTGDGPT
RWHSDLNMAPLDCNDFVTAWIPLEEVPAKRDGGSPLVFASRSHRDFALNH
WRDPRLREDLTGRYREKDHAPLAAGDITWHHGWTLHSSPGNRRDTPRVAL
AVSYFRDGTCLLSDTAG
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mRNA from alignment at E_fasciculatus_S2_contig9764:1627..5391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9764.17759.1 ID=mRNA_E_fasciculatus_S2_contig9764.17759.1|Name=mRNA_E_fasciculatus_S2_contig9764.17759.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3765bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9764:1627..5391+ (Ectocarpus fasciculatus EfasUO2)
ACTAAGGGCTTGCGCTTTCTGGAAGCCGCCGATTTCGATGTTCCCGCAGA AGATCGTCTAGCGTTCGAGAGAAATGGACATGCCGTCACGCGGGGCGTGT TATCCTCGCAGCAACTCAAGGCGCTGCGTCCCAGCATTGTGCAAGGTGAC TGCTGTACCTACATAGCAGTGGTAGAACCGGGCTCCCGCCTTTTATTATA GTGTTTTAGTGTGAAGCGGCATCACCGGTGCCGTGGTGGGACAGGGACAG GTTCAGCATGACGACCCTCCGAACAGACTCTGATCTTGTTGGTATATGTG CGAAATCAAGTACGTGTCCCAAACGCTGCAGAGAGAGAGAGAGACGTCGC CATACTTCGGCAATCTGTAGCGTACCCAGTTGGCATACAACCTGATGGGA ACCGGAAGCGTGGAGAGTTTCTGGTTGGTCAATTGTTTTGGAAGGAGATT TGTGATTGGTGGGAAATCCTTGTGGACAAATGTTGTCATCCAGGGCGGTG AAACCGCTATTGGCGAAACACACGAATAAAAACCAATTAATATTGACCGT GGACGATACTATCATAGCGTCGGTCACTCACTTTTCACTGCGACCTGTTG GCACCTCGTATATATCTCGTTCTCTCTCCCTCTCTCTCTCTCCGTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTTTCTTACCTCTCTCTCGTGCTGTCTTTCTTTATCCATGC AACCACTGCAATAGCTTGCCAGTTCCCGTGCCGTGTGGTGCGATAGCTCC AGCTACTGCACCCCACCACAGAAGGCACACCAACACCGAAAGTGCCCGAT ATGTATCATCACAGAGGGCCAAAGTCTTTTTACCGTGTGCGGAAAGCACC CACAACGATACCTCCTCCTCTTCCTCACGTGCCTTTTTCTCACCCCCCCA CGCCTCGCTTTCCGTCCAGCCTTCGAGCTCCAAGAGATGAACGCGCTGCG CCAGAAGGTCTCCGTCTGGTTCGGCGACGACACCGCTTCCGAGCTCGAAA CCGCCCCACAGCTCCGCGCGAGGCTGAAACGCCTTGCCCCTGAGGAGGTC CCCTTTCTCCAGGTACACCGGCACGGACTAGGACGAGAAACACACCCCTA ACTGTTTGGCTGGTTGCCTCACCTTATCGTTGTCGATGTGTTGTCGTGTG CGTGTCTACTCCCTACCTCGCCATAGCATTTATGTGTGTGCCCCCCCCCC CCCGAGCAAGGAGACTCGAAAAGACGCAACCTAAACTATAGCAACTCCTG TGAGGTAAACAAGTAACCTTAACTACAGCGACTCCTGTGAGATACACAAG TAAATGCATTGCAGCGTGACTGCGGTCGAACTGAACGATCGTGCTGTAGG CTTGCACGTGTCTTGTCGGCGTCGGTAACCCTTACTATTTTTCATCCGGC GCGCGAAAACACTGCCGCCGCTTCAGGTTTTCAACATGTTCAGGAAAGAC GGTCCGTTCCGAGAAACCATCGAGCAGGTCGTCCTGTCCCCGAGGCTCGC CCACATCGCCGCGCAGCTCCTGGGCTGTCAACGGTGAGCGAGCATCGAAA ATGGTGCTAGCTTAAGCGATACAGTGGCTGCGCGTTCTCGTTCGCCACAC ACGAGCCATCGCGAAATTTCCTGAAGGGTCTGTATCGTGAGCGGCTCTGT CGCCTCCGGCAGTCTTGAAATAGCGTCCGGATGATGGTCTGTAGAAGAAC AGCCTCGCCGACACGCTCTCGATTAGGTGGAATGTGTACCGTTTCCTTTC TCGCAAGGTTCTGGATGCGCAAAGGTGGGGGGGGGGTGTACCCGTTCTGC ACGCCCCGTGCTTCAAGTCTCAAGAGACGACCTACTACTCTCAGCACATG GGAGGGAAGCCTCAGGTTGGGTGGCTGCCTCTCAGGTTACTTGCTCCCCC TCCCGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTGCCGCCG CTACTCGTGCCCTCCTACGGTCTTGATCAGCGTGAGACTCTACCAAGACT CCACGTTCTGCAAGCGGACGGGGGACGGGCCAACCAGGTGGCACTCGGAC CTCAACATGGCGCCGCTGGACTGCAACGACTTCGTGACCGCGTGGATACC TTTGGAGGAGGTTCCCGCCAAGAGAGACGGCGGGTCGCCCCTGGTGTTCG CTAGCAGGTCGCACCGCGACTTCGCCCTCAACCACTGGCGGGATCCCCGG CTAAGGGAAGACTTGACCGGGAGATACCGCGAGAAGGACCACGCTCCCTT GGCCGCCGGTAAATAGTAAGACTGTTGTATACAGATTCGTTGTTTTTTTT TCTTGTCCGTTGAGGGTCGCTGGGGTGTTCGAGTAAAAAAACACACGTCA GCTGTGAGGCGTCCGCCCTGTCAGCGAGTCAGGACCGTGCTTCCAAGGCC CAGGATCACCGCTCTCACCGCCAGCGCTTGGAGGCGCACGAGAAGGCCCG GGCACGGCGCGTGCGGGGCTGTTTGATCGGCGATATCGCCCACGAAGCGG CCGCGCATGTCCCGCGCCCGGGTCTCCGCGGGCGCCTCCAAGCGCTAGCG GTGTCCTGAGCCTTGGAAGCCCGGCCCTGACTCGCTGACAGCGCGGGCGC CTCAGCGACGTGGGAAGCGGCGGCGGCGGCGGCAGAGTTGCGGTGCGAGC TGGGAAGCGTTACACCGCAGCTGTGGCAGCCAGCTCTGTGGGTTGGTCCT GCCTCCCTGCTTTCTTTTCATCTTGCACCACACCCCTTGATGACACTGCT GTGCTCTCGTGGGCCTACTCCGGAGGGGTCACTCGTACGCACACAAATGC TCCCAGCGATTCTTGATGGCCACCGCTTTGCGGTTCCCCGAACGCGCATT TTGACGACGCAGGGGGAGGATAGTAGTGCGGTTTGGCTTCTCGGCATGCC CTGTGGTTGGGCGAGGGAAAGCCCTGTGACCCGGGACACGATGATACTTC TCGTGGTACATAGTTCGAAGGGGCGAGATCGAAATCAAGTGATTTCTTGC GCCTTGTGCCCATCGAAACTCCCGCCCACCCCGGGAAAAAGCCGCCTGGG AGTTCCCCGTCAGGGTGTACTCATAGTCGTGTATGCCGTAGTCGTGAGAT CATTGACCTCGCATCCCTACAAGGCCGGGACGGAACGGGGGTTGCTATTT TGACCTTGACGGCTTCCTCGTGGAGGCAGTGTTAGCAGGCATCCTCTGAA TTAGCGAAATTTCTAACGTTTGCAAAAGTCGGCTGTGGTACCCAACCATT CAAAACGGCATGCATGGCCCATCCCTTCATGTGGTACAATGACCTGGGAT ATCGGTAAGGGTGGGGGGGCGAACGTGCAGGTGCACGATGGATTTTTGAA ACGCGATTTCTCCCCGAGCAAGAGGCTGTCAAATGCCGAAACGGGTGGTA TTCGAAAGTATCCCGTACAGGAAGAGCTTTCTTGCATGTGTCGGTTGGGA TGTTGTTGCAGGTTGTGCAGCAAATCGATCTTTAAATAAACGATCGCGTA TCTGTGCGTTCGCTCGCACCTAAATATGGTGTGATCTCAGAATGGCATCC TACCAAGAACTATTGACGTGCTTTGATGTGTGTGTAGGTGACATCACGTG GCACCATGGGTGGACGCTCCACAGCTCCCCGGGCAACAGGAGGGATACAC CTCGGGTGGCCTTAGCCGTCAGCTACTTCCGGGACGGGACCTGCCTCCTA TCCGACACCGCCGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9764:1627..5391+

>mRNA_E_fasciculatus_S2_contig9764.17759.1 ID=mRNA_E_fasciculatus_S2_contig9764.17759.1|Name=mRNA_E_fasciculatus_S2_contig9764.17759.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=801bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9764:1627..5391+ (Ectocarpus fasciculatus EfasUO2)
ACTAAGGGCTTGCGCTTTCTGGAAGCCGCCGATTTCGATGTTCCCGCAGA
AGATCGTCTAGCGTTCGAGAGAAATGGACATGCCGTCACGCGGGGCGTGT
TATCCTCGCAGCAACTCAAGGCGCTGCGTCCCAGCATTGTGCAAGCCTTC
GAGCTCCAAGAGATGAACGCGCTGCGCCAGAAGGTCTCCGTCTGGTTCGG
CGACGACACCGCTTCCGAGCTCGAAACCGCCCCACAGCTCCGCGCGAGGC
TGAAACGCCTTGCCCCTGAGGAGGTCCCCTTTCTCCAGGTTTTCAACATG
TTCAGGAAAGACGGTCCGTTCCGAGAAACCATCGAGCAGGTCGTCCTGTC
CCCGAGGCTCGCCCACATCGCCGCGCAGCTCCTGGGCTGTCAACGCGTGA
GACTCTACCAAGACTCCACGTTCTGCAAGCGGACGGGGGACGGGCCAACC
AGGTGGCACTCGGACCTCAACATGGCGCCGCTGGACTGCAACGACTTCGT
GACCGCGTGGATACCTTTGGAGGAGGTTCCCGCCAAGAGAGACGGCGGGT
CGCCCCTGGTGTTCGCTAGCAGGTCGCACCGCGACTTCGCCCTCAACCAC
TGGCGGGATCCCCGGCTAAGGGAAGACTTGACCGGGAGATACCGCGAGAA
GGACCACGCTCCCTTGGCCGCCGGTGACATCACGTGGCACCATGGGTGGA
CGCTCCACAGCTCCCCGGGCAACAGGAGGGATACACCTCGGGTGGCCTTA
GCCGTCAGCTACTTCCGGGACGGGACCTGCCTCCTATCCGACACCGCCGG
G
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