mRNA_E_fasciculatus_S2_contig9744.17742.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9744.17742.1
Unique NamemRNA_E_fasciculatus_S2_contig9744.17742.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9744.17742.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9744contigE_fasciculatus_S2_contig9744:5160..5513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size356
Hectar predicted targeting categorysignal anchor
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842618.6872659-CDS-E_fasciculatus_S2_contig9744:5159..55131696842618.6872659-CDS-E_fasciculatus_S2_contig9744:5159..5513Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9744 5160..5513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9744.17742.1prot_E_fasciculatus_S2_contig9744.17742.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9744 5160..5513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9744.17742.1

>prot_E_fasciculatus_S2_contig9744.17742.1 ID=prot_E_fasciculatus_S2_contig9744.17742.1|Name=mRNA_E_fasciculatus_S2_contig9744.17742.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
PILQLFSLSRSSPSWGCRRTILIFLCYTWVLVVAQMPRRECQMKKLFRQM
MAPGMIVLRVVMCRCFVWGGVLRMCVLRKPSGMGPGLFAKARVAGVIVTA
LRAILHPFDKARLILIS*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9744:5160..5513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9744.17742.1 ID=mRNA_E_fasciculatus_S2_contig9744.17742.1|Name=mRNA_E_fasciculatus_S2_contig9744.17742.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9744:5160..5513+ (Ectocarpus fasciculatus EfasUO2)
CCAATACTTCAACTTTTTTCTTTGTCACGATCGTCACCCTCGTGGGGGTG
TCGACGTACCATTCTGATTTTTTTGTGCTACACCTGGGTGCTGGTCGTTG
CGCAGATGCCTCGCCGTGAATGCCAAATGAAAAAACTATTTCGTCAGATG
ATGGCGCCCGGCATGATAGTGCTAAGGGTAGTCATGTGTCGGTGTTTCGT
GTGGGGTGGTGTACTCCGTATGTGTGTTCTTCGTAAACCTAGTGGGATGG
GTCCTGGTCTTTTCGCGAAGGCTCGCGTCGCTGGGGTGATTGTTACGGCG
CTGCGGGCGATCTTGCACCCATTCGACAAGGCAAGATTAATATTGATTTC
CTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9744:5160..5513+

>mRNA_E_fasciculatus_S2_contig9744.17742.1 ID=mRNA_E_fasciculatus_S2_contig9744.17742.1|Name=mRNA_E_fasciculatus_S2_contig9744.17742.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9744:5160..5513+ (Ectocarpus fasciculatus EfasUO2)
CCAATACTTCAACTTTTTTCTTTGTCACGATCGTCACCCTCGTGGGGGTG
TCGACGTACCATTCTGATTTTTTTGTGCTACACCTGGGTGCTGGTCGTTG
CGCAGATGCCTCGCCGTGAATGCCAAATGAAAAAACTATTTCGTCAGATG
ATGGCGCCCGGCATGATAGTGCTAAGGGTAGTCATGTGTCGGTGTTTCGT
GTGGGGTGGTGTACTCCGTATGTGTGTTCTTCGTAAACCTAGTGGGATGG
GTCCTGGTCTTTTCGCGAAGGCTCGCGTCGCTGGGGTGATTGTTACGGCG
CTGCGGGCGATCTTGCACCCATTCGACAAGGCAAGATTAATATTGATTTC
CTGA
back to top