mRNA_E-fasciculatus_F_contig10071.78.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10071.78.1 vs. uniprot
Match: D8LRX4_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX4_ECTSI) HSP 1 Score: 300 bits (768), Expect = 3.290e-101 Identity = 142/162 (87.65%), Postives = 147/162 (90.74%), Query Frame = 2 Query: 239 MNLPAGWESGTDATGRTFYMNHETKQTQWNHPADPTPETRPPPSYEPPSKDLYAEQGVVTATAVPAPQYVETVGAQ-RGIE------TGHHPHAGGVVTQQPGPGHTVIVVQEGNRNIPPNAPDGGHWRQERYCGLITWLVALFVVPFIGCCLPCCPCDERT 703
MNLPAGWESGTDATGRTFYMNHET+QTQWNHPADPTPE+RPPPSYEPPS LYAEQGVVTATAV APQYVETVGAQ GI+ GHHP AGGVVT QPGPGHTVIVVQEGNRNIPPNAPDGG W+QERYCGLITWLVALFVVPFIGCC+PCCPCDERT
Sbjct: 1 MNLPAGWESGTDATGRTFYMNHETRQTQWNHPADPTPESRPPPSYEPPSNGLYAEQGVVTATAVTAPQYVETVGAQPAGIQLTTCTQAGHHPQAGGVVTTQPGPGHTVIVVQEGNRNIPPNAPDGGQWKQERYCGLITWLVALFVVPFIGCCMPCCPCDERT 162
BLAST of mRNA_E-fasciculatus_F_contig10071.78.1 vs. uniprot
Match: A0A6H5JEI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEI3_9PHAE) HSP 1 Score: 275 bits (704), Expect = 1.630e-91 Identity = 128/156 (82.05%), Postives = 134/156 (85.90%), Query Frame = 2 Query: 239 MNLPAGWESGTDATGRTFYMNHETKQTQWNHPADPTPETRPPPSYEPPSKDLYAEQGVVTATAVPAPQYVETVGAQRGIETGHHPHAGGVVTQQPGPGHTVIVVQEGNRNIPPNAPDGGHWRQERYCGLITWLVALFVVPFIGCCLPCCPCDERTV 706
MNLPAGWE G DATGRTFY+NHET+QTQWNHPADPTPE R PPSYEPPS DLY QGV TATAVPAP +V+ VGAQ GI+ GHHPHA VVT QPGPGHTV VV RN PPNAPDGG WRQERYCGLITWLVALFVVPFIGCC+PCCPCDERTV
Sbjct: 1 MNLPAGWEIGKDATGRTFYINHETQQTQWNHPADPTPELRRPPSYEPPSTDLYVAQGVATATAVPAPLFVQAVGAQPGIQAGHHPHASEVVTTQPGPGHTVTVV----RNCPPNAPDGGQWRQERYCGLITWLVALFVVPFIGCCMPCCPCDERTV 152
BLAST of mRNA_E-fasciculatus_F_contig10071.78.1 vs. uniprot
Match: A0A813G7E1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G7E1_POLGL) HSP 1 Score: 60.1 bits (144), Expect = 5.440e-8 Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 2 Query: 569 IPPNAPDGGHWRQERYCGLITWLVALFVVPFIGCCLPCCPCDERTV 706
+P AP GG+W E+YCG+IT L+AL + PF+ CC PCDER V
Sbjct: 14 VPYGAPPGGYWATEKYCGIITILIALCICPFVCCC----PCDERDV 55
BLAST of mRNA_E-fasciculatus_F_contig10071.78.1 vs. uniprot
Match: A0A813IVK9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IVK9_POLGL) HSP 1 Score: 61.6 bits (148), Expect = 1.230e-7 Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 2 Query: 497 AGGVVTQQPGPGHTVIVVQEGNRNIPPNAPDGGHWRQERYCGLITWLVALFVVPFIGCCLPCCPCDERTV 706
+GG Q PG G+ + V +P AP GG+W E+YCG+IT L+AL + PF+ CC PCDER V
Sbjct: 149 SGGQAMQAPG-GYMLPPVP-----VPYGAPPGGYWATEKYCGIITILIALCICPFVCCC----PCDERDV 208
BLAST of mRNA_E-fasciculatus_F_contig10071.78.1 vs. uniprot
Match: A0A8D0GBQ8_SPHPU (WW domain-containing protein n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0GBQ8_SPHPU) HSP 1 Score: 57.4 bits (137), Expect = 1.910e-6 Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 2 Query: 92 LVPRGQEVIAGGERRVQLVLVP---GGTSEHRKSAD-------IPRAPEAGRDHPQQRAMNLPAGWESGTDATGRTFYMNHETKQTQWNHP 334
L PR + G R+++ +P G E+ + A+ + P+A PQQ + LP GWE D GRT+Y+NHE+++TQW P
Sbjct: 12 LHPRSHKSRVKGHLRLKMTYLPKNNGSEEENTEQAEELEPGWTVLDQPDAACQLPQQESSPLPPGWEERQDLVGRTYYVNHESRRTQWKRP 102
BLAST of mRNA_E-fasciculatus_F_contig10071.78.1 vs. uniprot
Match: A0A3P9LST0_ORYLA (E3 ubiquitin-protein ligase n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9LST0_ORYLA) HSP 1 Score: 57.0 bits (136), Expect = 8.720e-6 Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 2 Query: 92 LVPRGQEVIAGGERRVQLVLVP--GG----TSEHRKSADI-PRAPEAGRDHPQQRAMNLPAGWESGTDATGRTFYMNHETKQTQWNHPAD 340
L PR + G R+++ +P GG T E R+ A++ + ++G PQQ LP GWE D GRT+Y+NH + TQW P++
Sbjct: 12 LRPRSHKSRVKGYLRLKMAYLPKQGGQEEETGEIREEAEVWDESADSGSQRPQQLLPPLPQGWEEKVDNLGRTYYVNHNNRSTQWKRPSN 101
BLAST of mRNA_E-fasciculatus_F_contig10071.78.1 vs. uniprot
Match: A0A3P9J8U0_ORYLA (E3 ubiquitin-protein ligase n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9J8U0_ORYLA) HSP 1 Score: 57.0 bits (136), Expect = 8.720e-6 Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 2 Query: 92 LVPRGQEVIAGGERRVQLVLVP--GG----TSEHRKSADI-PRAPEAGRDHPQQRAMNLPAGWESGTDATGRTFYMNHETKQTQWNHPAD 340
L PR + G R+++ +P GG T E R+ A++ + ++G PQQ LP GWE D GRT+Y+NH + TQW P++
Sbjct: 12 LRPRSHKSRVKGYLRLKMAYLPKQGGQEEETGEIREEAEVWDESADSGSQRPQQLLPPLPQGWEEKVDNLGRTYYVNHNNRSTQWKRPSN 101
BLAST of mRNA_E-fasciculatus_F_contig10071.78.1 vs. uniprot
Match: A0A3B3IGC4_ORYLA (HECT-type E3 ubiquitin transferase n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3B3IGC4_ORYLA) HSP 1 Score: 57.0 bits (136), Expect = 8.950e-6 Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 2 Query: 92 LVPRGQEVIAGGERRVQLVLVP--GG----TSEHRKSADI-PRAPEAGRDHPQQRAMNLPAGWESGTDATGRTFYMNHETKQTQWNHPAD 340
L PR + G R+++ +P GG T E R+ A++ + ++G PQQ LP GWE D GRT+Y+NH + TQW P++
Sbjct: 144 LRPRSHKSRVKGYLRLKMAYLPKQGGQEEETGEIREEAEVWDESADSGSQRPQQLLPPLPQGWEEKVDNLGRTYYVNHNNRSTQWKRPSN 233
BLAST of mRNA_E-fasciculatus_F_contig10071.78.1 vs. uniprot
Match: A0A3P9K6X2_ORYLA (HECT-type E3 ubiquitin transferase n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3P9K6X2_ORYLA) HSP 1 Score: 57.0 bits (136), Expect = 8.960e-6 Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 2 Query: 92 LVPRGQEVIAGGERRVQLVLVP--GG----TSEHRKSADI-PRAPEAGRDHPQQRAMNLPAGWESGTDATGRTFYMNHETKQTQWNHPAD 340
L PR + G R+++ +P GG T E R+ A++ + ++G PQQ LP GWE D GRT+Y+NH + TQW P++
Sbjct: 144 LRPRSHKSRVKGYLRLKMAYLPKQGGQEEETGEIREEAEVWDESADSGSQRPQQLLPPLPQGWEEKVDNLGRTYYVNHNNRSTQWKRPSN 233
BLAST of mRNA_E-fasciculatus_F_contig10071.78.1 vs. uniprot
Match: A0A8C7YPB7_9TELE (HECT-type E3 ubiquitin transferase n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7YPB7_9TELE) HSP 1 Score: 57.0 bits (136), Expect = 8.960e-6 Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 2 Query: 92 LVPRGQEVIAGGERRVQLVLVP--GG----TSEHRKSADI-PRAPEAGRDHPQQRAMNLPAGWESGTDATGRTFYMNHETKQTQWNHPAD 340
L PR + G R+++ +P GG T E R+ A++ + ++G PQQ LP GWE D GRT+Y+NH + TQW P++
Sbjct: 144 LRPRSHKSRVKGYLRLKMAYLPKQGGQEEETGEIREEAEVWDESADSGSQRPQQLLPPLPQGWEEKVDNLGRTYYVNHNNRSTQWKRPSN 233 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10071.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10071.78.1 >prot_E-fasciculatus_F_contig10071.78.1 ID=prot_E-fasciculatus_F_contig10071.78.1|Name=mRNA_E-fasciculatus_F_contig10071.78.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=156bp MNLPAGWESGTDATGRTFYMNHETKQTQWNHPADPTPETRPPPSYEPPSKback to top mRNA from alignment at E-fasciculatus_F_contig10071:146..4728+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10071.78.1 ID=mRNA_E-fasciculatus_F_contig10071.78.1|Name=mRNA_E-fasciculatus_F_contig10071.78.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4583bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10071:146..4728+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10071:146..4728+ >mRNA_E-fasciculatus_F_contig10071.78.1 ID=mRNA_E-fasciculatus_F_contig10071.78.1|Name=mRNA_E-fasciculatus_F_contig10071.78.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10071:146..4728+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |