mRNA_E_fasciculatus_S2_contig965.17661.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig965.17661.1
Unique NamemRNA_E_fasciculatus_S2_contig965.17661.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: IPPc (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN8_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 7.090e-82
Identity = 142/163 (87.12%), Postives = 146/163 (89.57%), Query Frame = 1
Query:    1 MGSELLPLGPVGSWAGGGGGDAGVGGEHAASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLWLHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNVAVDIKSQ 489
            MGSELLPLGPVGSWAG G      GGEH ASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKP+FDDPLWLHEWLCP E PEGK RS GDASSAP  AA+AGNAES  AET AS+EG+GMEDVYAIGFQELVDLNAVNVAVDIKSQ
Sbjct:    1 MGSELLPLGPVGSWAGVGXXXXXFGGEHDASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPNFDDPLWLHEWLCPAEGPEGKERSSGDASSAPPAAAKAGNAESVCAETSASEEGNGMEDVYAIGFQELVDLNAVNVAVDIKSQ 163          
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: IPPc (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG62_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 1.260e-77
Identity = 135/161 (83.85%), Postives = 141/161 (87.58%), Query Frame = 1
Query:    1 MGSELLPLGPVGSWAGGGGGDAGVGGEHAASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLWLHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNVAVDIK 483
            MGSELLPLGPVGSWAG G      GGEH ASEGLPSILDAIP WKRPRLLK LQERETEYT+VEGVGVFIGTWNVNAKKP+F+DPLWLHEWLCP ER EGKGRS GDASSA  P A+AGNA+   AETFAS+EGDGMEDVYAIG QELVDLNAVNVAVDIK
Sbjct:  495 MGSELLPLGPVGSWAGVGXXXXXFGGEHYASEGLPSILDAIPGWKRPRLLKDLQERETEYTSVEGVGVFIGTWNVNAKKPNFEDPLWLHEWLCPTERLEGKGRSSGDASSAQPPPAKAGNADRFYAETFASEEGDGMEDVYAIGLQELVDLNAVNVAVDIK 655          
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: RhoGAP (domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BMC2_POLPP)

HSP 1 Score: 59.7 bits (143), Expect = 2.560e-7
Identity = 49/130 (37.69%), Postives = 61/130 (46.92%), Query Frame = 1
Query:   82 HAASEGLPSIL----DAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLWLHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNA 459
            H   + LP ++    D   AW    +   L+ERE E+T  E + +F+GTWNVN KKP       L +WLCP     G G  GG  S+            SAGA            D+YAIGFQEL DL A
Sbjct:   84 HQHQKPLPPVVYKSVDVNGAW----ISNKLKEREPEFTKKENMVIFLGTWNVNGKKPAES----LDQWLCP-----GAGVEGGGLSA------------SAGAAL--------SPDIYAIGFQEL-DLTA 179          
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UTG8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.710e-7
Identity = 41/112 (36.61%), Postives = 53/112 (47.32%), Query Frame = 1
Query:  151 KGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLWLHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNVAVDIKS 486
            K LQERE E++ +    VF GTWNVN KK + +DP+   +W+                   P  AA                   G+ D+YAIGFQE+VDLN  NV +D KS
Sbjct:   43 KQLQEREAEFSDLVPGKVFCGTWNVNGKKLEEEDPI--EDWI-------------------PVEAAA------------------GLCDIYAIGFQEMVDLNVTNVTMDGKS 115          
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: synaptojanin-2 (n=1 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00101A4D1B)

HSP 1 Score: 55.8 bits (133), Expect = 6.150e-6
Identity = 41/133 (30.83%), Postives = 64/133 (48.12%), Query Frame = 1
Query:   79 EHAASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLW---LHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNV 468
            E +A +G   +LD       PR+L+ + ER+ E+T  + V V +GTWNVN  K    + L    L EWL      +  G SG      P+P                 ++G    D++A+GF+E+V+L+A N+
Sbjct:  453 EESADKGR-MLLDNTALLVTPRILRAMSERQAEFTNYKRVRVAMGTWNVNGGKQFRSNLLGTAELAEWLL-----DSPGLSG------PEP-----------------RDGSSPADIFAVGFEEMVELSAGNI 556          
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: synaptojanin-2 (isoform X2 n=1 Tax=Chlorocebus sabaeus TaxID=60711 RepID=UPI0018B0383D)

HSP 1 Score: 55.8 bits (133), Expect = 6.160e-6
Identity = 39/134 (29.10%), Postives = 63/134 (47.01%), Query Frame = 1
Query:   76 GEHAASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLW---LHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNV 468
            GE  A +G   +LD+      PR+LK + ER++E+T  + + + +GTWNVN  K    + L    L +WL    +  G   S  D+S A                           D++A+GF+E+V+L+A N+
Sbjct:  491 GEEMADKG-GMLLDSTALLVTPRILKAMTERQSEFTNFKRIRIAMGTWNVNGGKQFRSNLLGTAELTDWLLDSPQLSGTAESQDDSSPA---------------------------DIFAVGFEEMVELSAGNI 596          
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PRZ7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.160e-5
Identity = 37/114 (32.46%), Postives = 53/114 (46.49%), Query Frame = 1
Query:  151 KGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLWLHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAV-NVAVDIKSQ 489
            K ++ RE EYT    + VF+GTWNVN KKP   +P+   +WL P++                      G ++         K    + D+Y +GFQE+VDLN   NV  D  S+
Sbjct:   17 KQMRNRELEYTDFHSLNVFVGTWNVNGKKPS--EPI--DQWLQPKKEKIN------------------GTSQKFENNNEGKKLNSQLPDIYVLGFQEIVDLNRPSNVMSDATSK 108          
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: LOW (QUALITY PROTEIN: synaptojanin-2 n=1 Tax=Onychomys torridus TaxID=38674 RepID=UPI00167FBDA5)

HSP 1 Score: 54.7 bits (130), Expect = 1.540e-5
Identity = 38/123 (30.89%), Postives = 57/123 (46.34%), Query Frame = 1
Query:  109 ILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLW---LHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNV 468
            +LD       PR+LK + ER++E+T  + V + +GTWNVN  K    + L    L +WL    +  G   S GD S A                           DV+A+GF+E+V+L+A N+
Sbjct:  501 LLDNTALLVTPRILKAMTERQSEFTNFKRVQIAVGTWNVNGGKQFRSNLLGTAELTDWLLDAPQLSGAMDSQGDGSPA---------------------------DVFAVGFEEMVELSAGNI 596          
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: Phosphoinositide (5-phosphatase n=2 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=A0A6J0DBQ8_PERMB)

HSP 1 Score: 53.9 bits (128), Expect = 2.790e-5
Identity = 37/123 (30.08%), Postives = 58/123 (47.15%), Query Frame = 1
Query:  109 ILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLW---LHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNV 468
            +LD       PR+L+ + ER++E+T  + V + +GTWNVN  K    + L    L +WL    +  G   S GD+S A                           DV+A+GF+E+V+L+A N+
Sbjct:  501 LLDNTALLVTPRILRAMTERQSEFTNFKRVQIAVGTWNVNGGKQFRSNLLGTAELTDWLLDAPQLSGAVDSQGDSSPA---------------------------DVFAVGFEEMVELSAGNI 596          
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: synaptojanin-2 (isoform X4 n=2 Tax=Mus pahari TaxID=10093 RepID=UPI000A309B8A)

HSP 1 Score: 53.9 bits (128), Expect = 2.820e-5
Identity = 38/123 (30.89%), Postives = 57/123 (46.34%), Query Frame = 1
Query:  109 ILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLW---LHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNV 468
            +LD       PR+LK + ER++E+T  + + + +GTWNVN  K    + L    L +WL    +  G   S  DAS A                           DV+AIGF+E+V+L+A N+
Sbjct:  501 LLDNTALLATPRILKAMTERQSEFTNFKRIQIAVGTWNVNGGKQFRSNLLGTAELTDWLLDAPQLSGAVDSQDDASPA---------------------------DVFAIGFEEMVELSAGNI 596          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
IPPc7.090e-8287.12domain-containing protein n=1 Tax=Ectocarpus silic... [more]
IPPc1.260e-7783.85domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RhoGAP2.560e-737.69domain-containing protein n=1 Tax=Polysphondylium ... [more]
Hypothetical2.710e-736.61protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
synaptojanin-26.150e-630.83n=1 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI0010... [more]
synaptojanin-26.160e-629.10isoform X2 n=1 Tax=Chlorocebus sabaeus TaxID=60711... [more]
Hypothetical1.160e-532.46protein (Fragment) n=1 Tax=Aplanochytrium stocchin... [more]
LOW1.540e-530.89QUALITY PROTEIN: synaptojanin-2 n=1 Tax=Onychomys ... [more]
Phosphoinositide2.790e-530.085-phosphatase n=2 Tax=Peromyscus maniculatus baird... [more]
synaptojanin-22.820e-530.89isoform X4 n=2 Tax=Mus pahari TaxID=10093 RepID=UP... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig965contigE_fasciculatus_S2_contig965:11980..13471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score274.2
Seed ortholog evalue4e-71
Seed eggNOG ortholog2880.D7FKN8
Model size513
KEGG rclassRC00078
KEGG koko:K01099,ko:K01974,ko:K12819,ko:K20279
KEGG ReactionR04404,R09827
KEGG Pathwayko00562,ko01100,ko03040,ko04070,map00562,map01100,map03040,map04070
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.phosphatidylinositol dephosphorylation
EggNOG OGsCOG5411@1,KOG0565@2759,KOG0566@2759
EC3.1.3.36,6.5.1.4
Cds size513
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842610.9386325-CDS-E_fasciculatus_S2_contig965:11979..121461696842610.9386325-CDS-E_fasciculatus_S2_contig965:11979..12146Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig965 11980..12146 +
1696842610.9503324-CDS-E_fasciculatus_S2_contig965:12478..125661696842610.9503324-CDS-E_fasciculatus_S2_contig965:12478..12566Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig965 12479..12566 +
1696842610.9593031-CDS-E_fasciculatus_S2_contig965:13213..134711696842610.9593031-CDS-E_fasciculatus_S2_contig965:13213..13471Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig965 13214..13471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig965.17661.1prot_E_fasciculatus_S2_contig965.17661.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig965 11980..13471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig965.17661.1

>prot_E_fasciculatus_S2_contig965.17661.1 ID=prot_E_fasciculatus_S2_contig965.17661.1|Name=mRNA_E_fasciculatus_S2_contig965.17661.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=171bp
MGSELLPLGPVGSWAGGGGGDAGVGGEHAASEGLPSILDAIPAWKRPRLL
KGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLWLHEWLCPEERPEG
KGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVD
LNAVNVAVDIKSQASENIIR*
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mRNA from alignment at E_fasciculatus_S2_contig965:11980..13471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig965.17661.1 ID=mRNA_E_fasciculatus_S2_contig965.17661.1|Name=mRNA_E_fasciculatus_S2_contig965.17661.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1492bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig965:11980..13471+ (Ectocarpus fasciculatus EfasUO2)
ATGGGATCTGAGCTGCTGCCGCTTGGCCCTGTCGGAAGCTGGGCCGGGGG TGGCGGGGGTGACGCTGGGGTTGGTGGGGAACATGCTGCGAGCGAAGGCC TGCCCAGTATTCTCGATGCTATCCCTGCTTGGAAGCGACCCAGGTTGCTG AAGGGTCTGCAGGAGCGGTGAGCCGCAGCGTGTTGTGTTCTGCCCAACGT TGCAAGTAAAATAATCGAATTAAAGCAAGAACGTGATCCTACCTATCGTC GCCCAATGCCCCTCTGGCTGTGCCTCAATCGCGTCGCGTGTTGCTGCCCA TCCAGGTTCCCCGCAAAACAGTCTATACCAGTTGACACCGCTACAAGTAC TGAAAGCAGATGAACCCAAACCGTTTCAAGCAGCGCGCCCGTGACACGCA ATAATTTCACGGTAGAAAAGAGAGCGTTTGCCCACCACTCTTTTATGAGC AGAGCCTTGGCTGAAGGTAGCTTCCCCCATTATCGCTTGGCCGGACTAGG GAAACGGAGTACACCACCGTGGAAGGCGTCGGAGTCTTCATCGGGACGTG GAATGTTAACGCCAAGAAACCCGACTTCGATGACCCTGTGAGTGTCACGC GCTAGTTGGCCATGAGGCCATCGTTTGTAGCATCTCTGACACTTCAGATT CCTGCTCCGAAAACCCTCTCCTCGCCCTCCCTTCCATACAGGAGCGAAAC ACGGAGGCTCCAACATTCCTCCCTCTGTCTGTGATCCCGCAGGTTGCTTC TTGCCATATTTCCCCTCGGAAAGACCTTAAGTGTTGAAACTAAATATGTT TGTCGCCAGTTACCGCCGACACTGCTAGGAGGGACAAGACCGGCAACCCG ATTGCCTGGCTCGATATTCTAGGCTCGAGACCCGCCCATGGTTCCCAATT TTTCAGGGTACACCTCGGGAAATACCGCCAAAAAAATGTGCATAAAATAT CTGGAGGAAAAAAGAACGTTCTGCTCGTTGTGTAGGTTTGACTGAACTAG TGTGCACGTGGTCATTCCTTGTGAGAGGTAGAGGGTTCGGTCCCCCTCAG CCCCACCTTTATTTCTATCCCGATTTCCAACTTGGCGGTATTTTCCCGAG GTGTACCCTACAATTTTTCACTGGCGTGTGGGGTGTATTGTTGGTAGGAG CTCGGTGGATTTCACCTCAAATCCAGCCTGTTTTCCCGCTCTCTCGTCCG ACGGTCATGCTTGCCACAAAATTCCACCTCTAAGTTGTGGCTGCACGAGT GGCTTTGCCCCGAGGAAAGGCCAGAGGGCAAAGGGCGCAGCGGCGGGGAC GCCTCATCAGCACCACAACCAGCAGCAGAGGCGGGGAATGCTGAAAGCGC TGGCGCCGAGACCTTTGCCAGCAAGGAAGGTGACGGAATGGAAGACGTAT ACGCTATCGGGTTCCAGGAGTTGGTCGACCTCAACGCGGTCAACGTGGCC GTCGACATCAAGAGTCAGGCAAGCGAGAACATCATTCGATAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig965:11980..13471+

>mRNA_E_fasciculatus_S2_contig965.17661.1 ID=mRNA_E_fasciculatus_S2_contig965.17661.1|Name=mRNA_E_fasciculatus_S2_contig965.17661.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=513bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig965:11980..13471+ (Ectocarpus fasciculatus EfasUO2)
ATGGGATCTGAGCTGCTGCCGCTTGGCCCTGTCGGAAGCTGGGCCGGGGG
TGGCGGGGGTGACGCTGGGGTTGGTGGGGAACATGCTGCGAGCGAAGGCC
TGCCCAGTATTCTCGATGCTATCCCTGCTTGGAAGCGACCCAGGTTGCTG
AAGGGTCTGCAGGAGCGGGAAACGGAGTACACCACCGTGGAAGGCGTCGG
AGTCTTCATCGGGACGTGGAATGTTAACGCCAAGAAACCCGACTTCGATG
ACCCTTTGTGGCTGCACGAGTGGCTTTGCCCCGAGGAAAGGCCAGAGGGC
AAAGGGCGCAGCGGCGGGGACGCCTCATCAGCACCACAACCAGCAGCAGA
GGCGGGGAATGCTGAAAGCGCTGGCGCCGAGACCTTTGCCAGCAAGGAAG
GTGACGGAATGGAAGACGTATACGCTATCGGGTTCCAGGAGTTGGTCGAC
CTCAACGCGGTCAACGTGGCCGTCGACATCAAGAGTCAGGCAAGCGAGAA
CATCATTCGATAA
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