mRNA_E_fasciculatus_S2_contig9611.17626.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9611.17626.1
Unique NamemRNA_E_fasciculatus_S2_contig9611.17626.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9611.17626.1 vs.
Match: DNA (ligase (NAD(+)) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N8_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 9.940e-148
Identity = 332/443 (74.94%), Postives = 353/443 (79.68%), Query Frame = 2 
Query:   62 RSVEELGLRPGDRVRVRRAGDVIPQVIGLASPPHPDSSSAGEGEGDSARFAFPTHCPSCGTAVVKEEASDKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRSRTAVQARPXXXXXXXXAPLADEVESELEDGPEGASVRDDSDGDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEQ-----SILEGREGWGRLSARNVLDAVDRAKDGISLGRFIFSLGVPLVGARMAEVIAEEFNGDFEAFWGALTSRASDASQAQEAAQHKRDRETAALANTAAAEREEKNSAANDAAAVSAAVNGTDPTEPAAAEAFEGVQGMGPAMLTSLLRFAETDNGNRPVVEALASEVRFSARAHLRRRGPSRGGAVVDG-----GXXXXXXXGAWVEGKTVVFTGTLTR 1360
            R VEELGLRPGDRV+VRRAGDVIPQV+GLASPPHPDSSSAGEG+ DSARFAFPT CP+CGT VVKEE  DKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRS+TAVQA+PXXXXXXX APLAD+ E ++EDG EGASVRD + G+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        SILEGREGWGRLSARNVLDAVDRAKDG+SLGRFI+SLGVPLVGARMAEVIAEEFNG+FEAFWGALT RA   +  +                                      VNGT PTEPAAAEAF+G+QGMGPAML SLLRFA+ +NGNRPVVEALASEVRFSARA  R  G       +D       XXXXXXX AWVEGKTVVFTGTLTR
Sbjct:  707 REVEELGLRPGDRVKVRRAGDVIPQVLGLASPPHPDSSSAGEGDDDSARFAFPTCCPACGTPVVKEE--DKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRSQTAVQAQPXXXXXXX-APLADQRERDVEDGLEGASVRDGNKGEDGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSILEGREGWGRLSARNVLDAVDRAKDGVSLGRFIYSLGVPLVGARMAEVIAEEFNGEFEAFWGALT-RAGLPTPPK-------------------------------------VVNGTGPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALASEVRFSARARRRHAGGGEWMVALDAVVXXXXXXXXXXXXAWVEGKTVVFTGTLTR 1108
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9611.17626.1 vs.
Match: DNA (ligase (NAD(+)) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK0_9PHAE)

HSP 1 Score: 457 bits (1177), Expect = 1.620e-146
Identity = 359/501 (71.66%), Postives = 373/501 (74.45%), Query Frame = 2 
Query:   62 RSVEELGLRPGDRVRVRRAGDVIPQVIGLASPPHPDSSSAGEGEGDSARFAFPTHCPSCGTAVVKEEASDKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRSRTAVQARPXXXXXXXXA---PLADEVESELEDGPEGASVRDDS----DGDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEQSILEGRE------------------------------------------------------GWGRLSARNVLDAVDRAKDGISLGRFIFSLGVPLVGARMAEVIAEEFNGDFEAFWGALTSRASDASQAQEAAQHKRDRETAALANTAAAEREEKNSAAND----AAAVSAAVNGTDPTEPAAAEAFEGVQGMGPAMLTSLLRFAETDNGNRPVVEALASEVRFSARAH---LRRRGPSRGGAVVDGGXXXXXXXGAWVEGKTVVFTGTLTR 1360
            R VEELGLRPGDRV+VRRAGDVIPQV+GLAS  HPDSSSAG    DSARFAFPT CP+CGT VVKEE  DKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIV SPVDVLRLRS+TAVQARPXXXXXXXX    PLADE E ELEDG EGASVRD +     GDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                GWGRLSARNVLDAVDRAKDG+SLGRFI+SLGVPLVGARMAEVIAEEFNGDFEAFWGALT RASDASQA EAAQH RDRETAA+ANTAA ER+E N+AA      AAA  AAVNG  PTEPAAAEAF+G+QGMGPAML SLLRFA+ +NGNRPVVEALAS VRFSARA                    XXXXXXX AWVEGKTVVFTGTLTR
Sbjct:  727 REVEELGLRPGDRVKVRRAGDVIPQVLGLASRLHPDSSSAGXXXXDSARFAFPTCCPACGTPVVKEE--DKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVGSPVDVLRLRSQTAVQARPXXXXXXXXXXXXPLADERERELEDGLEGASVRDGNKGKDSGDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGRLSARNVLDAVDRAKDGVSLGRFIYSLGVPLVGARMAEVIAEEFNGDFEAFWGALT-RASDASQALEAAQHTRDRETAAVANTAA-ERQETNAAAXXXXXVAAATFAAVNGNGPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALASGVRFSARARRXXXXXXXXXXXXXXXXXXXXXXXXXXAWVEGKTVVFTGTLTR 1223
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9611.17626.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N5_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 8.220e-51
Identity = 108/134 (80.60%), Postives = 114/134 (85.07%), Query Frame = 2 
Query:  863 MAEVIAEEFNGDFEAFWGALTSRASDASQAQEAAQHKRDRETAALANTAAAEREEKNSAANDAA---AVSAAVNGTDPTEPAAAEAFEGVQGMGPAMLTSLLRFAETDNGNRPVVEALASEVRFSARAHLRRRG 1255
            MAEVIAEEFNGDFEAFWGALT RASDASQA EAAQ  RDRETAA+ANTAA ER+  N AA DAA   A  AAVNG DPTEPAAAEAF+G+QGMGPAML SLLRFA+ +NGNRPVVEALASEVRFSARA  R RG
Sbjct:    1 MAEVIAEEFNGDFEAFWGALT-RASDASQALEAAQRTRDRETAAIANTAA-ERQVPNHAAADAAVAAATVAAVNGNDPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALASEVRFSARARRRHRG 132
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9611.17626.1 vs.
Match: DNA (ligase (NAD(+)) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8G4_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.220e-32
Identity = 142/449 (31.63%), Postives = 191/449 (42.54%), Query Frame = 2 
Query:   59 FRSVEELGLRPGDRVRVRRAGDVIPQVIGLASPPHPDSSSAGEG-------EGDSARFAFPTHCPSCGTAVVKEEASDKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRSRTAVQARPXXXXXXXXAPLADEVESELEDGPEGASVRDDSDGDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEQSILEGREGWGRLSARNVLDAVDRAKDGISLGRFIFSLGVPLVGARMAEVIAEEFNGDFEAFWGALTSRASDASQAQEAAQHKRDRETAAL----ANTAAAEREEKNSAANDAAAVSAAVNGTDPTEPAAAEAFEGVQGMGPAMLTSLLRFAETDNGNRPVVEALASEVR------FSARAHLRRRGPSRGGAVVDGGXXXXXXXGAWVEGKTVVFTGTL 1354
            F+ V    +R GD V VRRAGDVIPQV+G A+       + GE        +  S   + PT CPSC   V +EE  D+    CPAGLSCPAQ++ERL HFVS+GAFDI+GLG  RL EL    +V +P D+  L SR A +           A      E   E  P   +      GD                                                ++ +LE R GWG  S   +  A+  A+  I L RFIF+LGV  VG   A+ IA  F G    +WGA+  +A +  + +E      DRE         +    E E+K S+  +A A  A                + ++G+GP ++ SL  F   D  N+  VEAL  E+       F+ R+ +      RG   VDG           + GKTV+FTG L
Sbjct:  549 FQDVARRDVRVGDLVAVRRAGDVIPQVLGRANLTLAAQGAGGEDARYGAEIDSRSKPISTPTRCPSCAGPVSQEE--DQVAVYCPAGLSCPAQSLERLAHFVSRGAFDIKGLGGRRLQELRSWEMVETPTDLFSLASREAAKKE-------RRARGRSSSEGSTERAPYSENTALGKPGDTMALHNGS----------------------------------------DEVLLEERAGWGEKSVTALFSAI-AARRKIPLSRFIFALGVTHVGQTTAQAIAAHF-GSVGNWWGAM--QALEQGEVEEGRCGVEDREDIEEHLNGGDVEITEGEKKLSSKKEATAQDAG-------------GMDTIEGIGPTVIASLRAFVR-DERNKRTVEALFREIEVLNEESFTERSDMEVSAGGRGPPRVDGP----------LVGKTVLFTGAL 920
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9611.17626.1 vs.
Match: DNA (ligase n=1 Tax=alpha proteobacterium AAP81b TaxID=1523432 RepID=A0A0N1BI58_9PROT)

HSP 1 Score: 126 bits (317), Expect = 1.330e-27
Identity = 68/135 (50.37%), Postives = 92/135 (68.15%), Query Frame = 2 
Query:   68 VEELGLRPGDRVRVRRAGDVIPQVIGLASPPHPDSSSAGEGEGDSARFAFPTHCPSCGTAVVKEEASDKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRS-RTAVQAR 469
            +  L +RPGDRVRV+RAGDVIPQ++G+          A EGE  +A + FP HCP CG+  V+E  +D+ VTRC  GL+CPAQ  ERL+HFVS+ AFDI+GLG  R+      G++R+P D+ RL++ R A+ AR
Sbjct:  374 IARLDVRPGDRVRVQRAGDVIPQILGVV---------ATEGE-RAAAYVFPGHCPVCGSTAVRE--ADEVVTRCTGGLTCPAQVAERLRHFVSRHAFDIEGLGSERIELFAGEGLIRTPGDIFRLKAHRDALVAR 496
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9611.17626.1 vs.
Match: DNA (ligase n=1 Tax=Acetobacter sp. TaxID=440 RepID=A0A847KP04_9PROT)

HSP 1 Score: 126 bits (316), Expect = 1.830e-27
Identity = 89/269 (33.09%), Postives = 117/269 (43.49%), Query Frame = 2 
Query:   83 LRPGDRVRVRRAGDVIPQVIGLASPPHPDSSSAGEGEGDSARFAFPTHCPSCGTAVVKEEASDKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRSRTAVQARPXXXXXXXXAPLADEVESELEDGPEGASVRDDSDGDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEQSILEGREGWGRLSARNVLDAVDRAKDGISLGRFIFSLGVPLVGARMAEVIAEEF 889
            +R GDRV V+RAGDVIPQ+IG +S   P+++  G        F FP HCP+CG+A   E    +A+ RC  GL+CPAQ VERL HFVS+ AFDI GLG   + E YEAG++ SP  + RL    +  AR                                                                                           REGWG LSARN++ A+ +A+  ISL RFIF+LG+  VG   A ++A  +
Sbjct:  384 VRVGDRVVVQRAGDVIPQIIGKSST-QPENAQRGSA------FIFPDHCPACGSAA--ERPPGEAIRRCTGGLTCPAQVVERLIHFVSRQAFDIDGLGDKSIREFYEAGLISSPGGIFRLAEHESAIAR-------------------------------------------------------------------------------------------REGWGELSARNLMQAI-QARSTISLSRFIFALGIRRVGESNARLLARHY 551
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9611.17626.1 vs.
Match: NAD-dependent (DNA ligase LigA n=1 Tax=Acetobacter garciniae TaxID=2817435 RepID=UPI001A9E19EC)

HSP 1 Score: 126 bits (316), Expect = 1.880e-27
Identity = 63/125 (50.40%), Postives = 85/125 (68.00%), Query Frame = 2 
Query:   83 LRPGDRVRVRRAGDVIPQVIGLASPPHPDSSSAGEGEGDSARFAFPTHCPSCGTAVVKEEASDKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRSRTA 457
            +RPGDRV ++RAGDVIPQV+G+       +  A +    +A + FPTHCP+CG   ++ E   +AV RC  GL+CPAQ VERL HFVS+ AFDI+GLG   + E YEAG++R+P D+ RL +  A
Sbjct:  390 IRPGDRVFIQRAGDVIPQVLGV-------TPGALDAPDRAAPYIFPTHCPACGALALRPEG--EAVRRCTGGLTCPAQVVERLIHFVSRQAFDIEGLGERSIREFYEAGLIRTPADIFRLHTHAA 505
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9611.17626.1 vs.
Match: DNA (ligase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5LN93_9PROT)

HSP 1 Score: 125 bits (315), Expect = 2.400e-27
Identity = 64/128 (50.00%), Postives = 83/128 (64.84%), Query Frame = 2 
Query:   68 VEELGLRPGDRVRVRRAGDVIPQVIGLASPPHPDSSSAGEGEGDSARFAFPTHCPSCGTAVVKEEASDKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRSR 451
            +E LG+ PGD VR++RAGDVIPQV+           SAG G+     F FPTHCP C +A V+E   DKAV RC  G +CPAQ VERLKHF+S+ AFDI+GLG   + + Y  GI+  P D+  L+++
Sbjct:  374 IERLGVMPGDTVRIQRAGDVIPQVV--------QRVSAGCGKA----FEFPTHCPVCRSAAVREP--DKAVRRCTGGFNCPAQTVERLKHFISRDAFDIEGLGATHIKDFYADGIINKPTDIFNLKNQ 487
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9611.17626.1 vs.
Match: DNA (ligase (NAD(+)) n=1 Tax=Acetobacter orientalis TaxID=146474 RepID=A0A2Z5ZLD2_9PROT)

HSP 1 Score: 123 bits (308), Expect = 2.620e-27
Identity = 62/125 (49.60%), Postives = 82/125 (65.60%), Query Frame = 2 
Query:   83 LRPGDRVRVRRAGDVIPQVIGLASPPHPDSSSAGEGEGDSARFAFPTHCPSCGTAVVKEEASDKAVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRSRTA 457
            +RPGD V+V+RAGDVIPQ++ +  PP P++    E       F FP HCP+CG   V+ E   +A+ RC  GL+CPAQ VERL HFVS+ AFDI+GLG   + E YE G++R+P D+ RL    A
Sbjct:   97 VRPGDTVQVQRAGDVIPQILAVI-PPGPNAPPRAE------PFQFPDHCPACGAIAVRPEG--EAIRRCTGGLTCPAQIVERLIHFVSRTAFDIEGLGERSIREFYEEGLIRTPADIFRLHEHAA 212
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9611.17626.1 vs.
Match: NAD-dependent (DNA ligase LigA (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A524KNI5_9HYPH)

HSP 1 Score: 120 bits (301), Expect = 7.050e-27
Identity = 67/129 (51.94%), Postives = 82/129 (63.57%), Query Frame = 2 
Query:   83 LRPGDRVRVRRAGDVIPQVIGLASPPHPDSSSAGEGEGDSARFAFPTHCPSCGTAVVKE--EASDK--AVTRCPAGLSCPAQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRSRTA 457
            +R GD V V+RAGDVIPQVI +     P  +          RFAFPTHCPSCG+  V+E  E + K   V RC  GL CPAQ VERLKHFVS+ AFDI+GLG  R+ ELY+  I++SP D+  L +  A
Sbjct:   21 IRIGDTVIVQRAGDVIPQVIDVVLGKRPKGAK---------RFAFPTHCPSCGSLAVREVDEKTGKRDVVCRCTGGLICPAQRVERLKHFVSRNAFDIEGLGEKRIQELYDDSIIQSPPDIFTLATEDA 140
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9611.17626.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA9.940e-14874.94ligase (NAD(+)) n=1 Tax=Ectocarpus siliculosus Tax... [more]
DNA1.620e-14671.66ligase (NAD(+)) n=1 Tax=Ectocarpus sp. CCAP 1310/3... [more]
Uncharacterized8.220e-5180.60protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
DNA3.220e-3231.63ligase (NAD(+)) n=2 Tax=Monodopsidaceae TaxID=4250... [more]
DNA1.330e-2750.37ligase n=1 Tax=alpha proteobacterium AAP81b TaxID=... [more]
DNA1.830e-2733.09ligase n=1 Tax=Acetobacter sp. TaxID=440 RepID=A0A... [more]
NAD-dependent1.880e-2750.40DNA ligase LigA n=1 Tax=Acetobacter garciniae TaxI... [more]
DNA2.400e-2750.00ligase n=1 Tax=Rhodospirillaceae bacterium TaxID=1... [more]
DNA2.620e-2749.60ligase (NAD(+)) n=1 Tax=Acetobacter orientalis Tax... [more]
NAD-dependent7.050e-2751.94DNA ligase LigA (Fragment) n=1 Tax=Hyphomicrobiale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9611contigE_fasciculatus_S2_contig9611:797..5861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score466.5
Seed ortholog evalue1.4e-128
Seed eggNOG ortholog2880.D7G0N8
Model size1363
KEGG rclassRC00005
KEGG koko:K01972
KEGG ReactionR00382
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
Hectar predicted targeting categorymitochondrion
Exons6
EggNOG free text desc.Ligase N family
EggNOG OGs2QWTN@2759,COG0272@1
Ec32 ortholog descriptionBRCT domain
Ec32 orthologEc-14_001690.2
EC6.5.1.2
Cds size1353
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9611.17626.1prot_E_fasciculatus_S2_contig9611.17626.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9611 797..5851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842607.8696864-CDS-E_fasciculatus_S2_contig9611:796..12321696842607.8696864-CDS-E_fasciculatus_S2_contig9611:796..1232Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9611 797..1232 -
1696842607.8938408-CDS-E_fasciculatus_S2_contig9611:1998..21031696842607.8938408-CDS-E_fasciculatus_S2_contig9611:1998..2103Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9611 1999..2103 -
1696842607.9043353-CDS-E_fasciculatus_S2_contig9611:3047..34851696842607.9043353-CDS-E_fasciculatus_S2_contig9611:3047..3485Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9611 3048..3485 -
1696842607.9192533-CDS-E_fasciculatus_S2_contig9611:4200..43161696842607.9192533-CDS-E_fasciculatus_S2_contig9611:4200..4316Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9611 4201..4316 -
1696842607.9338782-CDS-E_fasciculatus_S2_contig9611:4966..51231696842607.9338782-CDS-E_fasciculatus_S2_contig9611:4966..5123Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9611 4967..5123 -
1696842607.9472196-CDS-E_fasciculatus_S2_contig9611:5750..58511696842607.9472196-CDS-E_fasciculatus_S2_contig9611:5750..5851Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9611 5751..5851 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842607.9590156-UTR-E_fasciculatus_S2_contig9611:5851..58611696842607.9590156-UTR-E_fasciculatus_S2_contig9611:5851..5861Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9611 5852..5861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9611.17626.1

>prot_E_fasciculatus_S2_contig9611.17626.1 ID=prot_E_fasciculatus_S2_contig9611.17626.1|Name=mRNA_E_fasciculatus_S2_contig9611.17626.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=451bp
MIRRPPRSTLFPYTTLFRSVEELGLRPGDRVRVRRAGDVIPQVIGLASPP
HPDSSSAGEGEGDSARFAFPTHCPSCGTAVVKEEASDKAVTRCPAGLSCP
AQAVERLKHFVSKGAFDIQGLGPARLLELYEAGIVRSPVDVLRLRSRTAV
QARPPPPPPAAAAPLADEVESELEDGPEGASVRDDSDGDKKKMSKKKKKA
KKKSSMATKTQGGDGDSGRTERAVEEEEEEEEEEEEGEQSILEGREGWGR
LSARNVLDAVDRAKDGISLGRFIFSLGVPLVGARMAEVIAEEFNGDFEAF
WGALTSRASDASQAQEAAQHKRDRETAALANTAAAEREEKNSAANDAAAV
SAAVNGTDPTEPAAAEAFEGVQGMGPAMLTSLLRFAETDNGNRPVVEALA
SEVRFSARAHLRRRGPSRGGAVVDGGGGSVAGGGAWVEGKTVVFTGTLTR
*
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mRNA from alignment at E_fasciculatus_S2_contig9611:797..5861-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9611.17626.1 ID=mRNA_E_fasciculatus_S2_contig9611.17626.1|Name=mRNA_E_fasciculatus_S2_contig9611.17626.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5065bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9611:797..5861- (Ectocarpus fasciculatus EfasUO2)
TTTTTTTTTAATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACA
CGACGCTCTTCCGATCTGTCGAAGAGCTGGGGTTGCGCCCTGGTGACCGG
GTCAGGGTTCGGTGAGACATGAGACATGAGGAGGCTTTTGGCGATGGGTG
GCGGAGGGGTGTTTTTTTTTTGCCCAGGAATGTTTTGTGTCGACCATTTT
TTTTGCTTTTCTGTTGCTGATAATTCATTAGTGAGGCACCACGTAGGGGG
CAGAGGTCGCAGGTTTGTTGAGTATTTATGAACGTGTAAGAGATCTGGGT
GAGGACGTCGATTTTGGAAATCCAGCTTGTCAAGGGCAACGGGGTTGGAT
TGTGGTGACCTCTCTCTCTGTCCCTGTGTGCGGACAGCTTGCCCGCTCGC
AAGCACTGACGTCCACGGCGCGGAGCACGCCACTAAGGCACTTGTAAACC
ACCGCGCCTGTTCAAGCGTACTCCCCCTTTGTCCAGCCCGTGCCGCGTCC
TTTATCCGTTCGAATCGAAGGACTCGCATGAAAGTAGTCTCAAAAGCTTC
TCCCATAAATTTATGTGTTTCCGTATATATGCATCCTCTATCCGTTCGAA
TCGAAGGACTCGCACGAAGTGGTCTCAAAGTCTTCTCGTATCAATGAATA
CATTTCCGTCATGGGCATACCGTTTGCCTTATCGGGGCTTGACGGATAAA
CGCCTCCGTGTGCATTTTTTCGTGCATCAACTCTTAAGGCGGGCGGGAGA
CGTCATCCCCCAGGTGATCGGACTCGCGTCGCCCCCACACCCGGACAGCA
GCAGCGCTGGCGAAGGCGAAGGCGACAGCGCAAGGTTCGCGTTCCCGACA
CACTGTCCCTCTTGCGGTACGGCGGTCGTAAAGGAGGAGGCGAGTGTGGC
AGGATGGCTTTGGGCGGGGGGGTGTTGAGAGTTGATTTCTGGTGGTCCGG
CAGATTTTGTGATTCGTTCGGCTGATTCTGTTTCGCCGCTCTTTTCACTT
CTCGGAATCGGCGGCGGTTCGTAGCGTTGGCCTTGGTTCGTAGAGAAACG
TTTGGTTCATGTCCAAGTGTTGTTTTGTGCATGTCTTGAAAGAGCTTACT
TTGATCGTGGGATGCAGCAAAATTGGGCTTTGGCGTGTAGCATTGGTGTT
CTGCTTTTGTACACGAGTTGATTGAGAGTGCCCCCGCAGATGACACCACG
AACGCGTTCCTACAGCACGAAACCATTCAAGATGGTAACCGTCATCTGTT
TAGACAGTGGCACAGGAGAGTAAAAATCCCTCGCTGTCGCGGGGCGTGCA
GCGATTTCCGACTACACAACAACCGTTCTTTTGCCTCCCGCGATATGCCA
GTGCACAGCACAGGAGTTAAAGCTCTGCGCCGCACAAATAGTCCGCGTAC
ATAGTCCACTCTCCTCCTTCTCGCGATACCGCCCGTGGGCTCTGCATGAA
GCCCCCCGCTCTCAGGAGGCTGTACGAAACAAACCACCCTCATTTGTCTC
ACTGGCCCCACCCACCCCCCTTTGCTCTTCGACCCCGCCCACCAGGACAA
GGCCGTTACTCGCTGCCCGGCGGGACTGAGCTGCCCAGCCCAGGCGGTGG
AGCGGCTGAAGCACTTCGTTTCGAAGGGAGCGTTCGACATTCAGGGGCTT
GGTCCGGCAAGGTGTGGTGGGTGGATGTATTCCTTGCGATGTGGGGCATA
GGTTGAACACGTACGTCTTGCGATGTAGGACATGGATTGAACACGTGCGT
GCTGTCTGTGTGTGCATGGTGCAACGTGGATATACCCTAGAGGACGACAC
AGCCGTGACGGGAAAAACAAAGAAAAAAAACATCCGGATGTTTTGTACGA
GCTTGTCGTGATGACGTTTTGTTGGACCAGCGAAGGTTATGGTATGGCGA
TGGCTGTGTCTGCCCGCAAGTATTTTTAGTACCTCGTGTACATGTCTGTT
GTGCATTGGCAGTCGTCATCGAGGTAGTGCGGTGTTGCACGCGTACATCT
TTCCGCGGTAAACGGAATTAAGAGTTCGTGTGGAGTTGTGCATTGTGTGT
GTTCGACCCGCGCATTGCCGTGCATAGAGAAAGAGATAGCCTCGGTTTCG
TCAGCGCGAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCCGCAGCAGCAGC
AGTAGCAGCAGCAGAGTCAGCGGACCCCCACGACCAGCTCCCTCCCAATC
TTCACCTCAAGTATTGAAACACCTATACACCCGCCGCCGCCGCCGCCGTC
ACCACCATTATCTCCGACGTCGACACCAAATCCACCGTCACCAACACCCA
CAGTTTAATCCCACAAACTGAAATGAATGCTCGGTGCTGTGTGTGTTCCA
ATCTCCATTTGTCGATGAACGTTTAGACTTCTCGAGCTGTACGAAGCTGG
GATCGTCCGCAGCCCGGTCGACGTCCTCAGGCTGCGCTCGCGCACAGCGG
TGCAAGCGCGGCCGCCGCCACCGCCGCCTGCCGCCGCGGCCCCTCTGGCC
GACGAAGTAGAGAGCGAGTTGGAAGACGGGCCCGAGGGCGCCTCCGTCAG
AGACGATTCTGACGGCGACAAGAAGAAAATGAGCAAAAAGAAGAAGAAAG
CGAAGAAGAAATCGTCGATGGCCACGAAGACCCAAGGCGGGGATGGCGAC
AGTGGCAGAACTGAGCGAGCGGTGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGGAGCAGTCGATCCTGGAGGGGAGGGAAGGGTGGGGGC
GGCTGTCCGCGAGGAACGTGCTGGACGCGGTGGACAGAGCCAAGGACGGC
ATTTCGCTCGGACGGTGAGCGCAGTGCGGTATTTGGCATTTTTATTTAGA
AGCCGAAATAAATCAAACCATTAGTCTCAACAATTACAATAGTCACCGGC
TTCTTGGCGTTGTGCGTCGTTCGAACCTCAGGACTAGCTTTTTATTAGAA
ACCGAAATCAAACCATCAGACTAGCCGGCGCTGACTATTCTCATGGTACG
ATTCCGGCTTCTTTGCGTTGTGCGTTGTTGTGCGTCATTCGGACCCCACG
TCTAGCTTTTTTAGAAGGAAGCCGACACCAAACCGTTAGTCCCGTCAGCG
TTGATGGTTTGATTCGCCTTCCGTACGTTGTGCGGTGCGGCGGTGGTACA
GCGTTAGTGCTCTATGCATATGGCCGCGTAAATAGGGCCGGTCGTGTTGT
AAAAAGCTGACGAAGTCGCGTGACGCGGAGGGAGTTCATTCAACTGGTCA
CGATAAACACTTTCTGCGTGTTTCGGTATATTTCCTTTGGTCACCAAGCT
GGCGGGAAGCCGCCCTCTTTGCCGTGTGTGGTTTGACACGATTTTTTCTG
TTGAGCTTTCTTTGAAAGGGCTTCAGCGCATTTGTTTCCAGAGGAGCCTT
CGTTTGCACCAGCAGAACACGGCGGCGCAGGCCGGCAGGCAGTCAGCGCT
TCCTTGTGTTCGCGGGTCGGCTCCGTCTTGTTCGCGACGCAAGGGGGAGG
GGGCTCCGTGCCGACGCAGTGTGCCAATCATGCACGCAGCTTTGTTGTTT
GTTTTTTGTCATTCTAAATTTATTCTGTACGTCTGTCCTTCCTTCCACCT
TTCGGTGCACTTCTGGACGCAGCCAGCCAGCGTCGTCACACAGCGGTGTG
GTTTTCTGTTTTGATGTTTCGTGTTCCTGCCTGCTCTTTGTTGGTCGACC
GCCTTGTCATTCATTCACCGTCGCTGCTGCTGCTGCTGCCGCCGCCCTTA
CCCTGCAGATTCATATTTTCCCTGGGTGTCCCGCTCGTGGGCGCGCGCAT
GGCGGAAGTAATCGCGGAGGAGTTCAACGGAGATTTCGAGGCGTTTTGGG
GAGCGCTCACAAGGTCAGTCAGTCGACCCCTGCTCTGTGGCGAGGTGTCG
TGCGGAAGGGTTGGTGTGCGCCCCCAAGACGCGACGCTTGTTCGCTCTCT
AGCGGCCCACGCCTGATTCTTCATTCGGCGATTGTGATTGGTCGTTCAAG
GTCTACGGGTGGGCGTTGCTGTCGATATCGGTGTTTTGTTTTTTGGGCGG
TGGTGGGCGTGGTGTTGTTATTGTCACCTTCACAAGAAATAACGTGCTGT
CCTCTATTCAACACCTCTTCTCTCATACACTCTTGAAGGAAGAACCACAA
GTTTTACGTGGCTACCGGGGCTATGATGTGTACCCCAACTCAACGCAAAA
ACAAAAACGCCCCAGGTAAGAAGAGGTGTGCTCATAGTGAGGTAGGTGTG
TGGTCTCGAGACGTTCTTGTCTTTCGGTTCTACAGCTGTGTGGCGTGGCT
GTCGGTATATCGTTGGCCGCCCACTGTAACAATCGCCCGATGTACAAGGC
GGGTGGGTATAACTACCTAATCCCTGTGAGACCTGCGTATCAAGTTAATT
TTCATCCCCTTCGGTGTGTTGAACTATCATTGTTGAGTGCGCCAACCGGA
CGTGTCCCGTATGGTGTATGTTAAACTTGTCGTGAACCTGGGAGCGCGTC
CGCTTCTCTTGCTGTGTCCTCGAGCTGGCTACTTTTTTTTCGTCATCCCT
CCCTCCCCTTTCCTTCCGCAAACATTCATGGCAAAACTTGCTTTTTTTGG
TTGCCGGTGAAACACGCACTCTCGGAGAGCAGGGCTTCGGACGCCTCCCA
AGCGCAAGAGGCGGCCCAACACAAACGAGACAGAGAAACCGCCGCCCTCG
CCAACACCGCCGCGGCTGAACGAGAAGAAAAAAACAGTGCCGCCAACGAT
GCTGCCGCTGTTTCAGCCGCCGTCAACGGTACCGACCCGACTGAGCCCGC
CGCCGCAGAGGCGTTCGAGGGCGTCCAGGGCATGGGGCCGGCGATGCTCA
CCTCCCTGCTTCGCTTCGCGGAAACCGACAACGGCAATCGTCCGGTGGTG
GAGGCGCTTGCTTCGGAGGTCCGATTCTCGGCACGGGCTCATCTGCGTCG
TCGGGGCCCGAGCCGCGGTGGTGCGGTCGTCGATGGTGGGGGGGGGTCCG
TAGCAGGAGGCGGCGCTTGGGTGGAGGGGAAGACTGTGGTCTTCACCGGG
ACTTTGACAAGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9611:797..5861-

>mRNA_E_fasciculatus_S2_contig9611.17626.1 ID=mRNA_E_fasciculatus_S2_contig9611.17626.1|Name=mRNA_E_fasciculatus_S2_contig9611.17626.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1353bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9611:797..5861- (Ectocarpus fasciculatus EfasUO2)
ATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTT
CCGATCTGTCGAAGAGCTGGGGTTGCGCCCTGGTGACCGGGTCAGGGTTC
GGCGGGCGGGAGACGTCATCCCCCAGGTGATCGGACTCGCGTCGCCCCCA
CACCCGGACAGCAGCAGCGCTGGCGAAGGCGAAGGCGACAGCGCAAGGTT
CGCGTTCCCGACACACTGTCCCTCTTGCGGTACGGCGGTCGTAAAGGAGG
AGGCGAGTGACAAGGCCGTTACTCGCTGCCCGGCGGGACTGAGCTGCCCA
GCCCAGGCGGTGGAGCGGCTGAAGCACTTCGTTTCGAAGGGAGCGTTCGA
CATTCAGGGGCTTGGTCCGGCAAGACTTCTCGAGCTGTACGAAGCTGGGA
TCGTCCGCAGCCCGGTCGACGTCCTCAGGCTGCGCTCGCGCACAGCGGTG
CAAGCGCGGCCGCCGCCACCGCCGCCTGCCGCCGCGGCCCCTCTGGCCGA
CGAAGTAGAGAGCGAGTTGGAAGACGGGCCCGAGGGCGCCTCCGTCAGAG
ACGATTCTGACGGCGACAAGAAGAAAATGAGCAAAAAGAAGAAGAAAGCG
AAGAAGAAATCGTCGATGGCCACGAAGACCCAAGGCGGGGATGGCGACAG
TGGCAGAACTGAGCGAGCGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGGGAGCAGTCGATCCTGGAGGGGAGGGAAGGGTGGGGGCGG
CTGTCCGCGAGGAACGTGCTGGACGCGGTGGACAGAGCCAAGGACGGCAT
TTCGCTCGGACGATTCATATTTTCCCTGGGTGTCCCGCTCGTGGGCGCGC
GCATGGCGGAAGTAATCGCGGAGGAGTTCAACGGAGATTTCGAGGCGTTT
TGGGGAGCGCTCACAAGCAGGGCTTCGGACGCCTCCCAAGCGCAAGAGGC
GGCCCAACACAAACGAGACAGAGAAACCGCCGCCCTCGCCAACACCGCCG
CGGCTGAACGAGAAGAAAAAAACAGTGCCGCCAACGATGCTGCCGCTGTT
TCAGCCGCCGTCAACGGTACCGACCCGACTGAGCCCGCCGCCGCAGAGGC
GTTCGAGGGCGTCCAGGGCATGGGGCCGGCGATGCTCACCTCCCTGCTTC
GCTTCGCGGAAACCGACAACGGCAATCGTCCGGTGGTGGAGGCGCTTGCT
TCGGAGGTCCGATTCTCGGCACGGGCTCATCTGCGTCGTCGGGGCCCGAG
CCGCGGTGGTGCGGTCGTCGATGGTGGGGGGGGGTCCGTAGCAGGAGGCG
GCGCTTGGGTGGAGGGGAAGACTGTGGTCTTCACCGGGACTTTGACAAGG
TGA
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