mRNA_E_fasciculatus_S2_contig9575.17594.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9575.17594.1
Unique NamemRNA_E_fasciculatus_S2_contig9575.17594.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9575.17594.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG21_ECTSI)

HSP 1 Score: 453 bits (1165), Expect = 1.230e-159
Identity = 246/255 (96.47%), Postives = 247/255 (96.86%), Query Frame = 1 
Query:    1 MGGGSRQNQRPNRTRARTAGPAVTCGAAGXXXXXXXXXXXXXXXXXXXXXAAGHASGIVGVGVKMKKSDVRFGNKEGGGTNFGSEERFAWQKCKYASDAMYTIPDVKAPPFSFGTSTRADWKKIMENTKDLYNPNSGPANYKTGNEYELLSESPSRRDITFGTAARESMDLMTASPGVLYNVDGVFRNGPVKGKILPGFNLDTRKPLAENTKSSTAAMYSPKLTSKGGAVWFGEKEQERFQGTIESIGRRSPGPV 765
            MGGGSRQNQR NRTRARTAGPA TCGAA XXXXXXXXXXXXXXXXXXXX AAGHASG  GVGVKMKKSDVRFGNKEGGGTNFGSEERFAWQKCKYASDAMYTIPDVKAPPFSFGTSTRADWKKIMENTKDLYNPNSGPANYKTGNEYE+LSESPSRRDITFGTAARESMDLMTASPGVLYNVDGVFRNGPVKGKILPGFNLDTRKPLAENTKSSTAAMYSPKL SKGGAVWFGEKEQERFQGTIE IGRRSPGPV
Sbjct:    1 MGGGSRQNQRSNRTRARTAGPAATCGAAXXXXXXXXXXXXXXXXXXXXXAAAGHASGTGGVGVKMKKSDVRFGNKEGGGTNFGSEERFAWQKCKYASDAMYTIPDVKAPPFSFGTSTRADWKKIMENTKDLYNPNSGPANYKTGNEYEVLSESPSRRDITFGTAARESMDLMTASPGVLYNVDGVFRNGPVKGKILPGFNLDTRKPLAENTKSSTAAMYSPKLASKGGAVWFGEKEQERFQGTIEGIGRRSPGPV 255
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BLAST of mRNA_E_fasciculatus_S2_contig9575.17594.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC23_9PHAE)

HSP 1 Score: 386 bits (992), Expect = 2.800e-134
Identity = 186/191 (97.38%), Postives = 186/191 (97.38%), Query Frame = 1 
Query:  193 MKKSDVRFGNKEGGGTNFGSEERFAWQKCKYASDAMYTIPDVKAPPFSFGTSTRADWKKIMENTKDLYNPNSGPANYKTGNEYELLSESPSRRDITFGTAARESMDLMTASPGVLYNVDGVFRNGPVKGKILPGFNLDTRKPLAENTKSSTAAMYSPKLTSKGGAVWFGEKEQERFQGTIESIGRRSPGPV 765
            MKKSDVRFGNKEGGGTNFGSEERFAWQKCKYASDAMYTIPDVKAPPFSFGTSTRADWKKIMENTKDLYNPNSGPANYKTGNEYELLSESPSRRDITFGTAARESM LMTASPGVLYNVDGVFRNGPVKGKILPGFNLD RKPLAENTKSST AMYSPKL SKGGAVWFGEKEQERFQGTIE IGRRSPGPV
Sbjct:    1 MKKSDVRFGNKEGGGTNFGSEERFAWQKCKYASDAMYTIPDVKAPPFSFGTSTRADWKKIMENTKDLYNPNSGPANYKTGNEYELLSESPSRRDITFGTAARESMHLMTASPGVLYNVDGVFRNGPVKGKILPGFNLDKRKPLAENTKSSTGAMYSPKLASKGGAVWFGEKEQERFQGTIEGIGRRSPGPV 191
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9575.17594.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.230e-15996.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.800e-13497.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9575contigE_fasciculatus_S2_contig9575:2918..5156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score452.2
Seed ortholog evalue1.6e-124
Seed eggNOG ortholog2880.D8LG21
Model size765
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2DCNP@1,2S5KF@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_004910.1
Cds size765
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.202733-CDS-E_fasciculatus_S2_contig9575:2917..33231696842604.202733-CDS-E_fasciculatus_S2_contig9575:2917..3323Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9575 2918..3323 +
1696842604.2196467-CDS-E_fasciculatus_S2_contig9575:3850..39161696842604.2196467-CDS-E_fasciculatus_S2_contig9575:3850..3916Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9575 3851..3916 +
1696842604.2290578-CDS-E_fasciculatus_S2_contig9575:4174..43801696842604.2290578-CDS-E_fasciculatus_S2_contig9575:4174..4380Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9575 4175..4380 +
1696842604.2386677-CDS-E_fasciculatus_S2_contig9575:5069..51561696842604.2386677-CDS-E_fasciculatus_S2_contig9575:5069..5156Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9575 5070..5156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9575.17594.1prot_E_fasciculatus_S2_contig9575.17594.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9575 2918..5156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9575.17594.1

>prot_E_fasciculatus_S2_contig9575.17594.1 ID=prot_E_fasciculatus_S2_contig9575.17594.1|Name=mRNA_E_fasciculatus_S2_contig9575.17594.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=255bp
MGGGSRQNQRPNRTRARTAGPAVTCGAAGGRRTSGGGGPRKPATTRDSSA
AAGHASGIVGVGVKMKKSDVRFGNKEGGGTNFGSEERFAWQKCKYASDAM
YTIPDVKAPPFSFGTSTRADWKKIMENTKDLYNPNSGPANYKTGNEYELL
SESPSRRDITFGTAARESMDLMTASPGVLYNVDGVFRNGPVKGKILPGFN
LDTRKPLAENTKSSTAAMYSPKLTSKGGAVWFGEKEQERFQGTIESIGRR
SPGPV
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mRNA from alignment at E_fasciculatus_S2_contig9575:2918..5156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9575.17594.1 ID=mRNA_E_fasciculatus_S2_contig9575.17594.1|Name=mRNA_E_fasciculatus_S2_contig9575.17594.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2239bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9575:2918..5156+ (Ectocarpus fasciculatus EfasUO2)
ATGGGAGGAGGATCACGGCAGAACCAGCGACCCAACAGGACGAGAGCAAG
AACGGCCGGGCCGGCGGTAACCTGCGGCGCTGCCGGCGGCAGAAGGACAA
GCGGGGGAGGCGGACCACGAAAACCAGCAACAACGAGAGACTCGTCTGCT
GCCGCTGGTCATGCTTCAGGCATCGTTGGGGTCGGTGTGAAAATGAAGAA
GAGCGACGTTCGGTTCGGAAACAAGGAGGGGGGGGGTACGAACTTCGGGT
CTGAGGAGAGGTTTGCGTGGCAGAAGTGCAAGTACGCCTCAGATGCCATG
TACACGATACCGGATGTCAAGGCTCCCCCCTTCAGCTTTGGCACAAGCAC
CCGCGCCGACTGGAAGAAGATCATGGAGAACACCAAAGACCTCTACAATC
CAAACTGTGAGATGGGTCTACACATGAGTAGATGCCCATCCAACCAGGTT
GCCTCGCCCACCGCTTCAACCAACAGTATTTGTGTTTCCATCGAGTAAAG
TACAGATACACTCGCTTAGGCCGAAACAAGTGGGTCGAGCACCTGTACCC
CCCTATCGTAGTGAAAGCTCCGGGTGGGATCTCATCAGTTGACATTCTAC
CCCTAGACACCACACCATTGTAGCCTCGGGCGCTTCACACCAGTACCGCA
ATGGCGAAACCTTGGCAGATATGTAGTTACTCGTAGGCCACAAACGAGGT
TGTGGTTTTTCACTTGCAAATCACTCAAGCACGCTACATGCTTAATCGCC
GACTGGGGTCTCTGGAAGTAGTCATTTTCATGAAGCAAGGAGCTTTGGAG
ACCATCCTCGGACCAAAGCTCCGTCGAAAAGCATGGCAGATAGTTATGAC
CTTGAGCTTCGACATTGAATGTTCCCCCTCGACCATTTCCTGGTTACTAA
CATCCGTTTTTCTTCCTGCCCGACATCATGAAGCCGGCCCGGCAAACTAC
AAAACGGGGAACGAGTACGAGCTTCTGTCGGAGTCTCCCAGCAGAAGAGG
TACGTGTAAAACAGTTGTGTACCACGCGCCACCTTCGGCCTGCAGTGAGA
GTGGTCATGAGATTTGAGTCGAACGCCGAGAGGGAGGAGTCTTCCCTGTC
ACGTTCGGTGAGAGTCGGTATCTCTACAATGGTGTGAAAGGTGTAGCCAA
ATCGATTGCGTGCGTTGCACTCGAAGTGCGAAGAGTTACACTGAACTTCC
GAAAACACTGTGTTCGATGGGGTGGGGGGTGGGATCACGTTTGGTCTGGG
GCGGCAGATATCACGTTCGGCACGGCGGCGAGAGAAAGCATGGACTTGAT
GACAGCCTCACCAGGAGTCCTCTACAACGTTGATGGAGTGTTCCGAAACG
GCCCGGTGAAGGGCAAGATTCTTCCAGGATTCAACCTCGACACGCGGAAG
CCGCTAGCGGAAAACACGAAGTCCTCGACGGCCGCCATGTACTCGCCCAA
GCTCACGAGCAAGGTGAGACGTGAGGGCTTTAACCTCGTAGAGACTAAAT
AGCGTTGCAGCATTTTTATGTTGTTTATTCAGCTTTCGACTCTGGATGAT
GGGCTCAGCTTGCCTGTGGGCTGTCAATGCTTTGCCTTACTTGTCGTCTT
TCTGGACTGCTGCAGGAGTGCTACTTTTCGCGAGCGGCCAAAAATTGAAA
AAGTGCGTGTTTCACCCTATTCGGGTTTGCATGCCTGCCGCCACGCAAGA
CCATTGTTTACCTTGATGGGTCGTACAATAATGTTCAGTGTGACCACCAT
AGAACAGGGAAAATAAGTTGTGCTACAGTTGAACGGACGTTTCGATCGAA
TGCGCTGTGTCAATTACGCTTGAACCGCGCGAAAAGGTATCAGGTATCGG
GGGCCCTGTGTTGTGCATTTGTGTTCATTCTGTTGAGAATACATTCGGTC
CGCGGTATGACGAGCGATTTGATATAGAAGAGCCCTTCGCTAACACCCTC
TGGGTAGTTCTTCGGACATTTTCGGGATGCAGGACAGACCCACAGGCAAA
TTCGTTGCCTTCAAACAAGACCACCTTAGGATGCACCGTACCAAGGTATC
TGGCCCAAGAAAGTGCTCCGTGCGCCCTGATCTCGTGGCATCGGCTTCAA
TGTCCTTCCCCTGTGCCTCACAACCTTCTCCTCTTCCCTCGCTGAAACAA
AGGGAGGGGCTGTTTGGTTCGGAGAAAAGGAGCAGGAGAGATTTCAGGGG
ACGATCGAAAGTATCGGGCGGCGATCACCGGGACCAGTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9575:2918..5156+

>mRNA_E_fasciculatus_S2_contig9575.17594.1 ID=mRNA_E_fasciculatus_S2_contig9575.17594.1|Name=mRNA_E_fasciculatus_S2_contig9575.17594.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=765bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9575:2918..5156+ (Ectocarpus fasciculatus EfasUO2)
ATGGGAGGAGGATCACGGCAGAACCAGCGACCCAACAGGACGAGAGCAAG
AACGGCCGGGCCGGCGGTAACCTGCGGCGCTGCCGGCGGCAGAAGGACAA
GCGGGGGAGGCGGACCACGAAAACCAGCAACAACGAGAGACTCGTCTGCT
GCCGCTGGTCATGCTTCAGGCATCGTTGGGGTCGGTGTGAAAATGAAGAA
GAGCGACGTTCGGTTCGGAAACAAGGAGGGGGGGGGTACGAACTTCGGGT
CTGAGGAGAGGTTTGCGTGGCAGAAGTGCAAGTACGCCTCAGATGCCATG
TACACGATACCGGATGTCAAGGCTCCCCCCTTCAGCTTTGGCACAAGCAC
CCGCGCCGACTGGAAGAAGATCATGGAGAACACCAAAGACCTCTACAATC
CAAACTCCGGCCCGGCAAACTACAAAACGGGGAACGAGTACGAGCTTCTG
TCGGAGTCTCCCAGCAGAAGAGATATCACGTTCGGCACGGCGGCGAGAGA
AAGCATGGACTTGATGACAGCCTCACCAGGAGTCCTCTACAACGTTGATG
GAGTGTTCCGAAACGGCCCGGTGAAGGGCAAGATTCTTCCAGGATTCAAC
CTCGACACGCGGAAGCCGCTAGCGGAAAACACGAAGTCCTCGACGGCCGC
CATGTACTCGCCCAAGCTCACGAGCAAGGGAGGGGCTGTTTGGTTCGGAG
AAAAGGAGCAGGAGAGATTTCAGGGGACGATCGAAAGTATCGGGCGGCGA
TCACCGGGACCAGTT
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