mRNA_E_fasciculatus_S2_contig9572.17591.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9572.17591.1
Unique NamemRNA_E_fasciculatus_S2_contig9572.17591.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9572.17591.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.060e-19
Identity = 64/118 (54.24%), Postives = 66/118 (55.93%), Query Frame = -2 
Query:    3 ATGAGTPQRGAAGRAPLRSRGTPGSSSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTPVGVSPPRASSRVLRSLPRRSLGFGSATAARRATIASPPM 356
            A+G GTPQ GAAGRAP+ SRGTPGSSSRQ                                               GTP GVSPPRASS VLRSLPRRSLGFGSATAARRATIASPPM
Sbjct: 2294 ASGNGTPQYGAAGRAPIGSRGTPGSSSRQRGRNADVTAAPASSPSSTTEPAVRAAAERLRSSGAGRGGSSSS----GTPGGVSPPRASSHVLRSLPRRSLGFGSATAARRATIASPPM 2407
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BLAST of mRNA_E_fasciculatus_S2_contig9572.17591.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.560e-18
Identity = 62/118 (52.54%), Postives = 64/118 (54.24%), Query Frame = -2 
Query:    3 ATGAGTPQRGAAGRAPLRSRGTPGSSSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTPVGVSPPRASSRVLRSLPRRSLGFGSATAARRATIASPPM 356
            A+G GTPQ  AA RAPLRSRG PGSSSRQ                                               G+P GVSPPRASS VLRSLPRRSLGFGSATAARRATIASPPM
Sbjct: 2278 ASGNGTPQHSAARRAPLRSRGAPGSSSRQRGRNADVTAAPASSPSSTTEPAVRTAAERLRSSGAGRGGSSSR----GSPGGVSPPRASSHVLRSLPRRSLGFGSATAARRATIASPPM 2391
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9572.17591.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.060e-1954.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.560e-1852.54protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9572contigE_fasciculatus_S2_contig9572:4097..4454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size358
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.093969-CDS-E_fasciculatus_S2_contig9572:4096..44531696842604.093969-CDS-E_fasciculatus_S2_contig9572:4096..4453Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9572 4097..4453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9572.17591.1prot_E_fasciculatus_S2_contig9572.17591.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9572 4097..4453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9572.17591.1

>prot_E_fasciculatus_S2_contig9572.17591.1 ID=prot_E_fasciculatus_S2_contig9572.17591.1|Name=mRNA_E_fasciculatus_S2_contig9572.17591.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=119bp
DIGGEAIVARRAAVAEPNPRLRLGSDRRTREDARGGETPTGVPPLLLLPP
RPAPLLFRNLSAAAAGAVGAVVPDGDAAAAAAVTSAFLRRCRELLPGVPL
LRSGARPAAPRCGVPAPVA
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mRNA from alignment at E_fasciculatus_S2_contig9572:4097..4454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9572.17591.1 ID=mRNA_E_fasciculatus_S2_contig9572.17591.1|Name=mRNA_E_fasciculatus_S2_contig9572.17591.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=358bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9572:4097..4454+ (Ectocarpus fasciculatus EfasUO2)
GACATCGGCGGGGAGGCTATCGTAGCTCGCCGGGCCGCCGTCGCGGAGCC
GAACCCCAGGCTCCGCCTGGGCAGCGATCGCAGAACGCGGGAGGACGCCC
GGGGCGGGGAGACGCCAACAGGGGTGCCGCCGCTGCTGCTGCTGCCGCCA
CGCCCCGCCCCGCTGCTGTTCCGCAATCTTTCGGCAGCAGCGGCGGGGGC
GGTAGGCGCGGTGGTGCCGGATGGCGATGCTGCTGCCGCCGCCGCTGTCA
CGTCGGCGTTTCTTCGCCGTTGCCGAGAGCTGCTTCCGGGCGTCCCTCTG
CTGCGGAGCGGGGCACGCCCGGCGGCGCCGCGCTGCGGGGTGCCGGCGCC
TGTCGCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9572:4097..4454+

>mRNA_E_fasciculatus_S2_contig9572.17591.1 ID=mRNA_E_fasciculatus_S2_contig9572.17591.1|Name=mRNA_E_fasciculatus_S2_contig9572.17591.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=357bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9572:4097..4454+ (Ectocarpus fasciculatus EfasUO2)
GACATCGGCGGGGAGGCTATCGTAGCTCGCCGGGCCGCCGTCGCGGAGCC
GAACCCCAGGCTCCGCCTGGGCAGCGATCGCAGAACGCGGGAGGACGCCC
GGGGCGGGGAGACGCCAACAGGGGTGCCGCCGCTGCTGCTGCTGCCGCCA
CGCCCCGCCCCGCTGCTGTTCCGCAATCTTTCGGCAGCAGCGGCGGGGGC
GGTAGGCGCGGTGGTGCCGGATGGCGATGCTGCTGCCGCCGCCGCTGTCA
CGTCGGCGTTTCTTCGCCGTTGCCGAGAGCTGCTTCCGGGCGTCCCTCTG
CTGCGGAGCGGGGCACGCCCGGCGGCGCCGCGCTGCGGGGTGCCGGCGCC
TGTCGCG
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