mRNA_E_fasciculatus_S2_contig9570.17585.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9570.17585.1
Unique NamemRNA_E_fasciculatus_S2_contig9570.17585.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9570.17585.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU7_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.210e-31
Identity = 64/75 (85.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:   79 MREGGTRTNSGYRRRDGGIRPFGEIARRRQQRRRGHGGRAGDGFPVLSGRDGGEAGLPCSGAVGAVVEARGHARG 303
            MREGGT TNSGY RRDGGIRP  EIARRRQQRRRGHGGRAGDG PVL GRDGGEAGL   GAVGAVVEARG +RG
Sbjct:    1 MREGGTPTNSGYTRRDGGIRPDSEIARRRQQRRRGHGGRAGDGVPVLPGRDGGEAGLSSPGAVGAVVEARGLSRG 75
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BLAST of mRNA_E_fasciculatus_S2_contig9570.17585.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.150e-12
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 2 
Query:  185 MAEGLATAFQCFQDGMGEKLVSLAQEQSVLLSKLEATRE 301
            MAEGLATAFQCFQDGMGEKL+SLAQ+QS LLSKLEA+RE
Sbjct:    1 MAEGLATAFQCFQDGMGEKLISLAQQQSALLSKLEASRE 39
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9570.17585.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.210e-3185.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.150e-1289.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9570contigE_fasciculatus_S2_contig9570:55..2906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size468
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001190.1
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842603.6476605-UTR-E_fasciculatus_S2_contig9570:54..2071696842603.6476605-UTR-E_fasciculatus_S2_contig9570:54..207Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9570 55..207 -
1696842603.6806056-UTR-E_fasciculatus_S2_contig9570:2828..29061696842603.6806056-UTR-E_fasciculatus_S2_contig9570:2828..2906Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9570 2829..2906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842603.6579776-CDS-E_fasciculatus_S2_contig9570:207..4131696842603.6579776-CDS-E_fasciculatus_S2_contig9570:207..413Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9570 208..413 -
1696842603.6677365-CDS-E_fasciculatus_S2_contig9570:2797..28281696842603.6677365-CDS-E_fasciculatus_S2_contig9570:2797..2828Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9570 2798..2828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9570.17585.1prot_E_fasciculatus_S2_contig9570.17585.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9570 208..2828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9570.17585.1

>prot_E_fasciculatus_S2_contig9570.17585.1 ID=prot_E_fasciculatus_S2_contig9570.17585.1|Name=mRNA_E_fasciculatus_S2_contig9570.17585.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=79bp
MREGGTRTNSGYRRRDGGIRPFGEIARRRQQRRRGHGGRAGDGFPVLSGR
DGGEAGLPCSGAVGAVVEARGHARGGSS*
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mRNA from alignment at E_fasciculatus_S2_contig9570:55..2906-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9570.17585.1 ID=mRNA_E_fasciculatus_S2_contig9570.17585.1|Name=mRNA_E_fasciculatus_S2_contig9570.17585.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2852bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9570:55..2906- (Ectocarpus fasciculatus EfasUO2)
CTTGCACGCCGCACGGCATGACGGCATAGCTCTGGTCTCTGGTGGCTCTG
CTCTCAAACTCTTGTTATTACCTCGTTGATGAGGGAAGGAGGAACTCGAA
CCAATTCAGGTATGTCATATTATGGAAACAGTGAGTCAATGTAGAGCGGA
TTGTTATCGTGTACACCAAAACACATGTGGTTCAATCTCCTGTGGTTGAT
TGACTGCTGTTGCAACTCCTCCGGAGGACTCATCAACCGCATTGATGGGA
CGTCGCTCTTAGCTCTTACCTTTTAGCTTTTATTTTAAGTGCTGGACAGG
TGTAGGAAATTCGGGTACCATAATCCGGTGCGACAGCAGCATCAACGCAT
GGCGGTATACTCACTTTCCGTCTGGAATCGTGTCTCTTGTATACACAGCA
GACGATAGCAAGGGGCACGAAAACTGGCTTTTTCTTGAGTCTCGAAAATC
GGAATTCCGCCGCGTTTCTGTTGTCTGGTGGATGCTGATCGTGTATCATG
TTCTACAAATTGTTAGGCCTTGAAACATGCTCAAGCGGTACATCCGGTAG
GTTTGTTTCGTAGCGAAAGACGTAGAACATAGGTACAATAGTCGTTGTTT
TGGCTGACGGCTGCTGTTTTTCTTCTGGCGTTTGGTTGAATAGACAATGT
TCAAGTTTACCGATCCACCAATGGAAATACCAATGTTTTTCATTTCCTTC
ATACCTCCACGTGTGGTATGCGACGATGACCTACCTACCCATTCAGCAGA
GCTCAATGCCAGCACTGGCATGGTTGCAGGGGTGAACGTGGCCATGGCCA
GCACTGGAATGGTAGCAGCGGTGAAAGTTGCCCCGAAATCGCTGGCACTC
AACTGTAGGTTGCGAGTCATCGCACCCCTGTGCGGTAACTCTGGACCCTG
TGCGGAAATCGAATTAAATAATTATGCCATTAAATTTTCATCGCACCCCT
GTGCGACGAGTCCGGACCGTGCGGAAAACCCGGACCGTGCGCTAACCCGC
AACCTTACGGTAATCATTTTCGCGATTAAAAAAGTCAATGCAAGTATGGA
TACCGCAGAAGGAAGGCGGAGAAGCATCTTCGGTGGCTTTCCTTTCTCCT
ATGTGACCCAGCTGGTGCGTCCAGAATTGTCCTGACAGGTGTAACATACG
GCCCGACGTCAGAAACACATCATTAAAAGAGAATAACATAAAACATGTTA
TATCCGCTTGTCCGGGCAGCGAAGCCTCTTTTTATTTTTTGAATCGCAGT
CTTTCTTTCGCAGTATCCCCCCCCCCCAAACTCGGGTTGAGCAAGGCCGT
TGCGTGTGTGTCATTTTTTTACGTCACTGTATTAACATTAAAATACTGGC
ACACATGTAGCGGCCTTGCTCAACCCAAGCTGGGGGAGGGTCCCGGAGGC
CGAAGGCTGTGGCTGGCCAAGAAGAATATAGACAATGAGGCTTTCGCTGT
CTGGGTAAGACAAGCAGGACTTGGGTATTGGGTATTGGGTGAAGAAGAAA
ACGATGGCAGAAGCATTTGGTTTTTGCGGGATCGAAGTACCCTAGTTGGG
ACTGACTGCGCCCCCCATGATGATCTGGCCACGTGTTGGCGCTACCCCTG
ACCTGACCGCATGTGGCACACGGGCCGTGCGGCACCAAAACGCATCGCCC
ACTGTCCACCGCTGGGAAAATTGCGATGATGCTGTGATCGGGCCAAGGTT
TCGCACTAGGGGGTTGCTGTAGTAGTGCTTGGTTCCCACAATGCACGGTG
TCGAAAGCCAACAGCCGGTCATATGCAGCGAGGCAGTCCAAACAAGAGCG
GTAGAACAAGGCTGAGGATGAGACTTGGACCACTGGCACCACCTGCTCAT
GCTTTAGCTTTGTGTTTATGCTGATATATGTGTACAGCTCTCGTGCGGTT
CACATGGTCTATCGCTCCCACCTGTTTGGTGGCAACTTCAGCTCGAGGCA
GCGATTCCGCCGCACGTGGGTGCTCCTATTCCTCGAGTCGGCATTTGGGT
TGTGCAAAATTACGTTAACACGGTACAACCTCTTCTTCTTTTTCACCTGA
ACCCTCTTTGGGTCCTCCTAGTTGGCTGAACATCTTGGGAACGGTAAAGC
AGTCCGACGCATCTCCAATCGTGGCCCCACAACAGAAGGTTTCTCGCCGC
GAAGCCCTTTAACGTTCTCAACGCGTTCTTTCTGTAGCGCGAGGAAGGAA
GGAAGGTTCCTGGTTCTTGGTGCCCGCTCGAGTGTAGTCCTGAACTCGAC
CTTCTGCTCTCTGCTGTGTCGATCCGCCACAGAGGTCGTGCCCACCTTTA
CCTTTACCCATCCCAGAAAAGGTATTCCGGAACAAGCCGGTATTTCTTCC
CAACCGATTGGGCGAACCGGCTACAGCAGCAGTGCGTCCGTCCCTGTTGG
CTCACAACCATCCCGACCGCTGTGTTGCCCCAAGTCACCTCTCACCGCCT
AGTTGAACATTTACCGTGATCCTGTTCTTGCTGTGCTTTTTAGGATACAG
ACGGCGGGATGGCGGAATTCGCCCGTTCGGCGAGATTGCAAGGCGACGAC
AGCAGCGGAGAAGGGGCCATGGCGGAAGGGCTGGCGACGGCTTTCCAGTG
CTTTCAGGACGGGATGGGGGAGAAGCTGGTCTCCCTTGCTCAGGAGCAGT
CGGTGCTGTTGTCGAAGCTCGAGGCCACGCGAGAGGTGGGTCTTCGTGAG
TGCGTCCTGTGTACAATGTAAAATGCTTGTGATTGTTGTTGTTGTTGTTG
TTGTTTCTCACATTAGCTCTGAAAAAAGAAAGATGGGGAGCCCGTGGTCT
CAAAACCCGGCATACACGACCCCACGAAAAAAAAAAAAAAAAAACATAGG
GT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9570:55..2906-

>mRNA_E_fasciculatus_S2_contig9570.17585.1 ID=mRNA_E_fasciculatus_S2_contig9570.17585.1|Name=mRNA_E_fasciculatus_S2_contig9570.17585.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=237bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9570:55..2906- (Ectocarpus fasciculatus EfasUO2)
ATGAGGGAAGGAGGAACTCGAACCAATTCAGGATACAGACGGCGGGATGG
CGGAATTCGCCCGTTCGGCGAGATTGCAAGGCGACGACAGCAGCGGAGAA
GGGGCCATGGCGGAAGGGCTGGCGACGGCTTTCCAGTGCTTTCAGGACGG
GATGGGGGAGAAGCTGGTCTCCCTTGCTCAGGAGCAGTCGGTGCTGTTGT
CGAAGCTCGAGGCCACGCGAGAGGTGGGTCTTCGTGA
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