mRNA_E_fasciculatus_S2_contig947.17503.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig947.17503.1
Unique NamemRNA_E_fasciculatus_S2_contig947.17503.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 5.730e-58
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 2
Query:   68 TKGGSGEKHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELLHHKPREPIRYQVICM 376
            TK G G+KHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGST VATARVICSCGIPRFKTR+GWISEWLRGGENELVVELLHHKPREPIRYQVICM
Sbjct: 6676 TKVG-GDKHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTVVATARVICSCGIPRFKTRRGWISEWLRGGENELVVELLHHKPREPIRYQVICM 6777          
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 6.300e-54
Identity = 90/103 (87.38%), Postives = 97/103 (94.17%), Query Frame = 2
Query:   68 TKGGSGEKHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELLHHKPREPIRYQVICM 376
            TKGG G+KHPDIVPGEYLLKVVYSKGATMRDGVEIDLAA VGNLPFGST VATARVICSCGIPR+KTR+GW+SEWLRG  NE VVE+LHHKP++PIRYQVICM
Sbjct: 7277 TKGG-GDKHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAAVGNLPFGSTVVATARVICSCGIPRYKTRRGWVSEWLRGEGNERVVEVLHHKPKKPIRYQVICM 7378          
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K548_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.880e-14
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 2
Query:   89 KHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELLH 334
            KH    P +Y L++V   GA +RDG+EID  A VGNL  G    AT R I SCG+ R+   +GWISE  RG   E + E++H
Sbjct:  282 KHLRWHPVQYKLRIVCQDGAIVRDGIEIDSCASVGNLEMGEIVTATDRCINSCGVMRYHIDRGWISELTRGHVREPIAEVMH 363          
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3F7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.750e-14
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 2
Query:   89 KHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELLH 334
            KH    P +Y L++V   GA +RDG+EID  A VGNL  G    AT R I SCG+ R+   +GWISE  RG   E + E++H
Sbjct:  282 KHLRWHPVQYKLRIVCQDGAIVRDGIEIDSCASVGNLEMGEIVTATDRCINSCGVMRYHIDRGWISELTRGHVREPIAEVMH 363          
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6E7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.420e-12
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 2
Query:   74 GGSGEKHPDIVPGEYLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENE 313
            GGS + HP +    Y L++V  +GA +RDG+EID  A +G+L  G    A  R I SCG+ R++T +GW+SE  RG   E
Sbjct:  274 GGSSKAHPAV----YRLRIVCPEGAIVRDGIEIDSCANIGSLEMGEVVEAFDRCINSCGVLRYRTSRGWVSEQTRGHGRE 349          
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPP7_FISSO)

HSP 1 Score: 70.9 bits (172), Expect = 9.590e-12
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  116 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 331
            Y L++V  +GA +RDG+EID  A VGN+  G   VA  R I S GI R++T +GW+SE  RG   E + E+L
Sbjct: 1062 YKLRIVCPEGAVLRDGMEIDSCANVGNMEMGEVVVADDRCINSSGIMRYRTNRGWVSEMTRGHGREPIAEVL 1133          
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHS1_FISSO)

HSP 1 Score: 70.1 bits (170), Expect = 1.780e-11
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  116 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 331
            Y L++V  +GA +RDG+EID  A VGNL  G   VA  R I S GI R++T +GW+SE  RG   E + E+L
Sbjct: 1062 YKLRIVCPEGAVLRDGMEIDSCANVGNLEMGEVVVAYDRCINSSGIMRYRTIRGWVSEMTRGHGREPIAEVL 1133          
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV18_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 1.270e-10
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 2
Query:  122 LKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTR----KGWISEWLRGGENELVVELL 331
            L+V+Y  GA +R G+EID + VVG +  G+   A  R + + G+ R + R    +GWISE +RGG+ +L+VE+L
Sbjct:   61 LRVIYEHGAVVRSGLEIDTSEVVGTVEAGAVVAALERRVNASGVARHRVRHRGAQGWISERIRGGDEQLIVEVL 134          
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: HECT-type (E3 ubiquitin transferase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G082_PHATC)

HSP 1 Score: 65.1 bits (157), Expect = 1.010e-9
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  116 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKGWISEWLRGGENELVVELL 331
            + L++V  +GA +RDG+EID  A VGN+  G    +  R + S GI R++T +GW+SE  RG   E + E++
Sbjct: 1158 FRLRIVCPEGAVVRDGIEIDSCATVGNMEMGEVVESFDRCVNSSGILRYRTTRGWVSEMTRGHGREPIAEIV 1229          
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZL6_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 8.040e-9
Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 2
Query:  116 YLLKVVYSKGATMRDGVEIDLAAVVGNLPFGSTAVATARVICSCGIPRFKTRKG-WISEWLRGGENELVVELLHHKPREPIRYQVI 370
            Y LK+V   GAT+RDGV+ID  A +G    G    ATA       I R++   G WIS  LR    + VV++L H P +P+ Y+VI
Sbjct:  474 YHLKIVNPGGATIRDGVDIDSTASMGQCEVGEEVWATATATTREDILRYQLLGGGWISGVLRNAGRDPVVQILRHTPAQPLTYRVI 559          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig947.17503.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Uncharacterized5.730e-5895.15protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.300e-5487.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical7.880e-1446.34protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
Hypothetical8.750e-1446.34protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
Hypothetical3.420e-1243.75protein (Fragment) n=1 Tax=Ditylum brightwellii Ta... [more]
HECT-type9.590e-1247.22E3 ubiquitin transferase n=1 Tax=Fistulifera solar... [more]
HECT-type1.780e-1148.61E3 ubiquitin transferase n=1 Tax=Fistulifera solar... [more]
Hypothetical1.270e-1041.89protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
HECT-type1.010e-940.28E3 ubiquitin transferase (Fragment) n=1 Tax=Phaeod... [more]
Hypothetical8.040e-941.86protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig947contigE_fasciculatus_S2_contig947:24621..25000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size380
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842595.1182346-CDS-E_fasciculatus_S2_contig947:24620..249981696842595.1182346-CDS-E_fasciculatus_S2_contig947:24620..24998Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig947 24621..24998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig947.17503.1prot_E_fasciculatus_S2_contig947.17503.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig947 24621..24998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig947.17503.1

>prot_E_fasciculatus_S2_contig947.17503.1 ID=prot_E_fasciculatus_S2_contig947.17503.1|Name=mRNA_E_fasciculatus_S2_contig947.17503.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=126bp
GRLRQGGGGGNGQGSGSGIGIGNQGRKRGKAPRHCARGVPAQGRVQQGRD
HARRGGDRPRRGRRQPALREHGRRHRPGDLLVRDPPLQDPEGLDKRVAPG
RRERARSRAAAPQAQGAHPVPGHLHG
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mRNA from alignment at E_fasciculatus_S2_contig947:24621..25000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig947.17503.1 ID=mRNA_E_fasciculatus_S2_contig947.17503.1|Name=mRNA_E_fasciculatus_S2_contig947.17503.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=380bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig947:24621..25000+ (Ectocarpus fasciculatus EfasUO2)
GGGCGGCTCCGCCAAGGCGGTGGCGGCGGCAACGGCCAAGGCAGCGGCAG CGGCATCGGGATCGGGAACCAAGGGAGGAAGCGGGGAAAAGCACCCCGAC ATTGTGCCCGGGGAGTACCTGCTCAAGGTCGTGTACAGCAAGGGCGCGAC CATGCGCGACGGGGTGGAGATCGACCTCGCCGCGGTCGTCGGCAACCTGC CCTTCGGGAGCACGGCCGTCGCCACCGCCCGGGTGATCTGCTCGTGCGGG ATCCCCCGCTTCAAGACCCGGAAGGGTTGGATAAGCGAGTGGCTCCGGGG CGGAGAGAACGAGCTCGTAGTCGAGCTGCTGCACCACAAGCCCAGGGAGC CCATCCGGTACCAGGTCATCTGCATGGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig947:24621..25000+

>mRNA_E_fasciculatus_S2_contig947.17503.1 ID=mRNA_E_fasciculatus_S2_contig947.17503.1|Name=mRNA_E_fasciculatus_S2_contig947.17503.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig947:24621..25000+ (Ectocarpus fasciculatus EfasUO2)
GGGCGGCTCCGCCAAGGCGGTGGCGGCGGCAACGGCCAAGGCAGCGGCAG
CGGCATCGGGATCGGGAACCAAGGGAGGAAGCGGGGAAAAGCACCCCGAC
ATTGTGCCCGGGGAGTACCTGCTCAAGGTCGTGTACAGCAAGGGCGCGAC
CATGCGCGACGGGGTGGAGATCGACCTCGCCGCGGTCGTCGGCAACCTGC
CCTTCGGGAGCACGGCCGTCGCCACCGCCCGGGTGATCTGCTCGTGCGGG
ATCCCCCGCTTCAAGACCCGGAAGGGTTGGATAAGCGAGTGGCTCCGGGG
CGGAGAGAACGAGCTCGTAGTCGAGCTGCTGCACCACAAGCCCAGGGAGC
CCATCCGGTACCAGGTCATCTGCATGGG
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