mRNA_E_fasciculatus_S2_contig9451.17488.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9451.17488.1
Unique NamemRNA_E_fasciculatus_S2_contig9451.17488.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9451.17488.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Y7_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 3.450e-79
Identity = 137/158 (86.71%), Postives = 143/158 (90.51%), Query Frame = 3 
Query:   54 DEREKLLARASLTKSTLARHRSGSYGSSTKLNEVPLQWRRGSTNTDSYGAAAREEXXXXXXXGDFGPSKARSGRSTARSPLVKVVGGMKAAPEKPKANDGTTLVVAFIVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFG 527
            DEREKLLARASL+K+TLARHRSGSYGSSTKLNE  LQWRRGSTNTDSYGAAAREE       G FGPSKA  G++ ARSPLVKVVGGMK APEKPK NDGTTLV+AF+VMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFG
Sbjct:   33 DEREKLLARASLSKATLARHRSGSYGSSTKLNEALLQWRRGSTNTDSYGAAAREEED-----GGFGPSKASFGKNNARSPLVKVVGGMKPAPEKPKGNDGTTLVIAFVVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFG 185
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BLAST of mRNA_E_fasciculatus_S2_contig9451.17488.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ82_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 3.240e-42
Identity = 88/112 (78.57%), Postives = 94/112 (83.93%), Query Frame = 3 
Query:   51 NDEREKLLARASLTKSTLARHRSGSYGSSTKLNEVPLQWRRGSTNTDSYGAAAREEXXXXXXXGDFGPSKARSGRSTARSPLVKVVGGMKAAPEKPKANDGTTLVVAFIVMI 386
            NDEREKLLARASL+K+TLARHRSGS+GSSTKLNEVPLQWRRGSTNTDSYGAAA EE       G FGPSKA  GR+ ARSPLV+VVGGMK APEKPK NDGTTL V   V+I
Sbjct:   34 NDEREKLLARASLSKATLARHRSGSFGSSTKLNEVPLQWRRGSTNTDSYGAAASEEED-----GGFGPSKASCGRNNARSPLVRVVGGMKPAPEKPKGNDGTTLYVGASVVI 140
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BLAST of mRNA_E_fasciculatus_S2_contig9451.17488.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGK6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.330e-18
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 3 
Query:  318 KAAPEKPKANDGTTLVVAFIVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFG*ESDAGSR 551
            K   +  K + G  LV+AF+ M+FVGTGNRIFMKLQT PMYNYPF + +L+TFIY+PVCF YI+PM  FG    A  R
Sbjct:   71 KELEDDAKDDSGRMLVLAFVTMLFVGTGNRIFMKLQTIPMYNYPFTMNLLTTFIYIPVCFAYILPMQWFGSAITAEQR 148
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BLAST of mRNA_E_fasciculatus_S2_contig9451.17488.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UPU5_9ARCH)

HSP 1 Score: 84.0 bits (206), Expect = 4.490e-16
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 3 
Query:  318 KAAPEKPKANDGTTLVVAFIVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAF 524
            +AA E  K  +GTTL++AF++M+F   GNRIF +LQTYPM+NYP FL M+   +Y+P+C+ YI+P + F
Sbjct:   53 EAAVEPEKDENGTTLIIAFVLMLFFQLGNRIFGRLQTYPMHNYPLFLNMVMVAVYIPICYAYIIPAMLF 121
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BLAST of mRNA_E_fasciculatus_S2_contig9451.17488.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GY34_HEMAN)

HSP 1 Score: 83.6 bits (205), Expect = 2.770e-15
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 3 
Query:  324 APEKPKANDGTTLVVAFIVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFG*ESD 539
            A   PK  D   L V+F+ M+ +G+GN++F K+QT PM+NYP+FL + STF+Y+PV FLYI+PML     S+
Sbjct:   49 AAADPKKEDSFKLFVSFLAMVIIGSGNKVFQKIQTIPMHNYPYFLNLYSTFVYIPVSFLYIIPMLCLNRFSE 120
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BLAST of mRNA_E_fasciculatus_S2_contig9451.17488.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLH6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.550e-15
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:  324 APEKPKANDGTTLVVAFIVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFG 527
            AP +P   DG  L+V+F+ MIFVG GN+IF KLQT PM NYP FL +L+TF+Y+PV F YIVPM+ +G
Sbjct:    2 APPQPHERDGK-LLVSFVAMIFVGLGNKIFQKLQTIPMRNYPTFLNILTTFVYIPVSFAYIVPMIKYG 68
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BLAST of mRNA_E_fasciculatus_S2_contig9451.17488.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y0J6_HEMAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.010e-14
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 3 
Query:  324 APEKPKANDGTTLVVAFIVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFG*ESD 539
            A   PK  D   L V+F+ M+ +G+GN++F K+QT PM+NYP+FL + STF+Y+PV FLYI+PML     S+
Sbjct:  131 AAADPKKEDSFKLFVSFLAMVIIGSGNKVFQKIQTIPMHNYPYFLNLYSTFVYIPVSFLYIIPMLCLNRFSE 202
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BLAST of mRNA_E_fasciculatus_S2_contig9451.17488.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FL75_PYTOL)

HSP 1 Score: 84.3 bits (207), Expect = 1.240e-14
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 3 
Query:  339 KANDGTT--LVVAFIVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFG*ESDAGSR 551
            KA D  +  LVV+F+ M+FVG GN+IF KLQT PM+NYP FL +L+TF+Y+P+ F YI+PM+ +G    A  R
Sbjct:    4 KATDARSSKLVVSFVAMVFVGLGNKIFQKLQTIPMHNYPMFLNLLTTFVYIPISFAYIIPMIKYGTAITAEQR 76
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BLAST of mRNA_E_fasciculatus_S2_contig9451.17488.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX65_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.640e-14
Identity = 47/97 (48.45%), Postives = 54/97 (55.67%), Query Frame = 3 
Query:  240 GDFGPSKARSGRSTARSPLVKVVGGMKAAPE-KPKANDGTTLVVAFIVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFG 527
            G  G   A  G S   SP        K  P  + KA     LVVAF  MI    GNR+F KLQT PMYNYPFFL  L   +YVP+CF YI+PM+A+G
Sbjct:  102 GKEGKRAAAPGASALASPPAAAKRSPKPEPSAEDKAKRSRALVVAFFAMIVASLGNRVFQKLQTLPMYNYPFFLNALQVAVYVPLCFAYILPMVAYG 198
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9451.17488.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RT63_9ARCH)

HSP 1 Score: 80.9 bits (198), Expect = 4.810e-14
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 3 
Query:  339 KANDGTTLVVAFIVMIFVGTGNRIFMKLQTYPMYNYPFFLTMLSTFIYVPVCFLYIVPMLAFG 527
            K +D  TL + F+ M+ +G GN++F KL T PMYNYP FL +L++F+Y+PVCF YI+PM  +G
Sbjct:   59 KKDDARTLAIVFVGMVVIGLGNKVFNKLMTIPMYNYPNFLNLLTSFVYIPVCFAYIIPMARYG 121
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9451.17488.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.450e-7986.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.240e-4278.57protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.330e-1858.97protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized4.490e-1652.17protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
Hypothetical2.770e-1550.00protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
Uncharacterized5.550e-1560.29protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Hypothetical1.010e-1450.00protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
Uncharacterized1.240e-1453.42protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical1.640e-1448.45protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Uncharacterized4.810e-1452.38protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9451contigE_fasciculatus_S2_contig9451:450..2969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score79.0
Seed ortholog evalue1e-12
Seed eggNOG ortholog164328.Phyra79554
Model size979
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.CRT-like, chloroquine-resistance transporter-like
EggNOG OGs28IU4@1,2QR5M@2759,3QAZB@4776
Cds size216
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842593.7109225-UTR-E_fasciculatus_S2_contig9451:449..8981696842593.7109225-UTR-E_fasciculatus_S2_contig9451:449..898Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9451 450..898 -
1696842593.7654715-UTR-E_fasciculatus_S2_contig9451:1916..20661696842593.7654715-UTR-E_fasciculatus_S2_contig9451:1916..2066Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9451 1917..2066 -
1696842593.7785714-UTR-E_fasciculatus_S2_contig9451:2805..29691696842593.7785714-UTR-E_fasciculatus_S2_contig9451:2805..2969Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9451 2806..2969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842593.7348979-CDS-E_fasciculatus_S2_contig9451:898..10661696842593.7348979-CDS-E_fasciculatus_S2_contig9451:898..1066Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9451 899..1066 -
1696842593.7482772-CDS-E_fasciculatus_S2_contig9451:1868..19161696842593.7482772-CDS-E_fasciculatus_S2_contig9451:1868..1916Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9451 1869..1916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9451.17488.1prot_E_fasciculatus_S2_contig9451.17488.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9451 899..1916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9451.17488.1

>prot_E_fasciculatus_S2_contig9451.17488.1 ID=prot_E_fasciculatus_S2_contig9451.17488.1|Name=mRNA_E_fasciculatus_S2_contig9451.17488.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=72bp
MKAAPEKPKANDGTTLVVAFIVMIFVGTGNRIFMKLQTYPMYNYPFFLTM
LSTFIYVPVCFLYIVPMLAFG*
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mRNA from alignment at E_fasciculatus_S2_contig9451:450..2969-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9451.17488.1 ID=mRNA_E_fasciculatus_S2_contig9451.17488.1|Name=mRNA_E_fasciculatus_S2_contig9451.17488.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2520bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9451:450..2969- (Ectocarpus fasciculatus EfasUO2)
GCGGTAGCAGCACCCGGGCAGCAGCAGGGACGACAGGGGCAGCAACGAGC
AATGATGAGCGAGAGAAGTTGCTAGCCCGCGCGTCCTTGACCAAGTCCAC
CTTGGCAAGGCATCGTAGCGGCAGCTACGGCTCCAGCACTAAGTTGAACG
AGGTCCCCCTGCAGGTGGGGGTACTGCTGTCTGTTGTAGGGTGCAACGAA
TTCCCTTCTTGAGTTGACGGTCTCTGCATGTTGCAGGAAGTTGCAGGAAC
AAGAAAACATGCCAAAAATCATCGCGGTTTTATCTTGAACCCAGATACAC
CCCATGGATAGAGGTGGTCTACTATTCAAAGAGATCCTGTTTGATTCTGG
TTGAAAGAACTAAAGAAATAGATCACCTGGTATTGGACGTATTAAGGTCA
AGATGTTCATACTTTAACGTGTCTTGGTAGGCCAGGCGGTTACCGTGGCG
TCAGCCAATTCGAGGAGCACACACGCAGACGCACGCACACGAACAAGTAG
CGTGTTTTTTTTTTTCATTCTGTCCCGCTGCTTATGACTGCTATATTCTT
ATCCGGTCAGCCAGTTATTAGAGCGCTGCGCGGTAACAACGCCATTTCTG
TTCGAAACACGCGCCCACGCACACACACTTGTTGGGGTGCTTGCAGAGTA
CCGATCTATGGAGGTTCCGGGGGGGGGGAGGGGGGGGGGGTAACGTGGAT
GATGATACGGGTATGATGGACATGACGCGCGGGACCCCTCTTGCCTCATC
CCGCATGGACATGTCACTCTTTACTCGTTAGTCATGATTGGTCCTTATCC
TGAGAGTAAGTCTTCTTTCTCTCTGACGAAGCTGCGCACACGAATGCCCC
TCCTACTCCTCGCTGCTATTGGCACTATTGGCACGATCGATCGACCGATC
CAGTGGAGAAGAGGGTCCACCAACACGGACTCCTACGGCGCCGCGGCAAG
AGAGGAAGAAGACGGTGACGGTGGTGGTGGTGACTTTGGCCCGAGCAAAG
CCAGGTCCGGGAGGAGCACTGCCAGGTCCCCGCTGGTGAAGGTGGTGGGG
GGCATGAAGGCCGCGCCGGAGAAGCCGAAGGCGAATGATGGCACCACGCT
GGTGAGAATATTCCGGGATTTTTCTCCCATAGGGTTAATAGTGTTTTTTC
CAAGGATGGGACCACGCTTGCGGTAATAACGCGTTAAGCTGTTTGTTCTT
TACCCCGAAGGATGGCACCACGCTGGTGATAATTGTCCAAGCTTTTATCT
GGGTAGTATGCATAGTGTTTTTTGTTTTGTTTTCTGTGTTGTTGAGCTCG
GTCAGACCGCGGCGGTGTGCCTCTATTTCGTCCACGTCTGTTACGCATTG
ATTGGTGTAGCCGCCTTCGACCCTCGGGATTCTAACCTCGAGTCCTATCG
TACGATGTTCCTGTAAGAGGCAGAGAGATGGCACCCCCCCTAGAGGCGGA
TTTTCAAGGCTCAACTGCTCCACAACAAGTAGCATAGGTGCGGAAAGAGC
CCGCAATGTCTACGGAATCCCCTCGACGAAATAGTTCCAAAACCACCATT
TATGGCGTTGGTACAAAACCCGCTCCCGGTAAGGTAAGTGGTGGTGATAT
TTCGTGCGAACCGAAGACCGGATATTGTAGCACCTTCAATAGGGTCATCG
CTCACCCCGCCCTCCTTGCGTTTTTTTGCCACATGTGTGGCGTGATTGTT
AAGATTTGATTGGTGGCAATGTTGTTGTCATCGGGCAACCACGCCTTGTT
CGAGCCTGCACAGGAAGAAACGACAACCCCGGAACGATTAGCCATCGGTG
ATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGCGGACGCGTGGTCAAT
GTCATGCCCCCCCCCTCCTCCCCCCCCCGTGCGATGTTTCAAATGTCTGC
CAGGTGGTAGCGTTCATCGTGATGATCTTCGTGGGCACGGGCAACCGCAT
CTTCATGAAGCTGCAAACGTACCCCATGTACAACTACCCGTTCTTCCTCA
CGATGCTCAGCACCTTCATCTACGTCCCCGTGTGCTTCCTGTACATCGTC
CCTATGCTCGCCTTTGGGTGAGAGTCTGACGCGGGCAGCCGCCCTTGTTG
CTGTTGAAGCAGCCCTTTGGCAAAGCTTGAGAGGTGTCCGTAGCAGTTGT
TGACGGAGCGGAACAGCCCGGTGGAAGAAGTGCCTCTGTTAAGCTTGGAG
TGTTTGTCGCCTTCTCACGGCGGTGCAATAGCGAATCATTTTCGTGGTTG
GAGGTATGGAAGGCGCTACTTCTCGATGGCTTCGGCAGCGGCAAGGAGCC
GTACCTGTTTATTTGATCCAGACCATGGGCGTTTTCCCGTCTGAACTTTT
TGCTTTAGTCAAGTACGATGCGGGCTCTTGGTTCTGTCGCCACTGAGCGA
GCCCCCATCTACTGCTGCGGTATACCTGGCGTAATGCAATAGCATGCTGC
GCTGTTTCCTACTGCTAAGATGTTTCGGTCAGTAGCCTTACTGTTTTGTT
CATTGGATTGTGGAATCCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9451:450..2969-

>mRNA_E_fasciculatus_S2_contig9451.17488.1 ID=mRNA_E_fasciculatus_S2_contig9451.17488.1|Name=mRNA_E_fasciculatus_S2_contig9451.17488.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=216bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9451:450..2969- (Ectocarpus fasciculatus EfasUO2)
ATGAAGGCCGCGCCGGAGAAGCCGAAGGCGAATGATGGCACCACGCTGGT
GGTAGCGTTCATCGTGATGATCTTCGTGGGCACGGGCAACCGCATCTTCA
TGAAGCTGCAAACGTACCCCATGTACAACTACCCGTTCTTCCTCACGATG
CTCAGCACCTTCATCTACGTCCCCGTGTGCTTCCTGTACATCGTCCCTAT
GCTCGCCTTTGGGTGA
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