mRNA_E_fasciculatus_S2_contig944.17479.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig944.17479.1
Unique NamemRNA_E_fasciculatus_S2_contig944.17479.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig944.17479.1 vs.
Match: MutS (protein homolog 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD9_ECTSI)

HSP 1 Score: 813 bits (2099), Expect = 7.530e-293
Identity = 427/444 (96.17%), Postives = 435/444 (97.97%), Query Frame = 1
Query:    1 MLKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVASTFADWCKLITSIESALDVRDGLALLRTSAGAAVTVDGSFGHEAFLARLLDNIDSVVLRECLEGLCTVIDPVASAQDKEVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPDDFTFAFAQQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDHFIPNDTFIADGSRVVLITGANCSGKSVYLKQVGVTVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTSPADGIGLVAALLRHLSRKGRKCLFTLHFHEIF 1332
            MLKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVA TFADWCKLITSIESALDVRDGLAL+RTSAGAAVTV G FG+E+FLARLLD+ID VVLR+CLEGLCTVIDPVASAQDK+VVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPDDFTFAFAQ GETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVD FIPNDTFIADGSRV LITGANCSGKSVYLKQVGV VYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQ+AQM RTSTPRSLLLIDEFGKGT+PADGIGLVAALLRHLSRKGRKCLFTLHFHEIF
Sbjct:  115 MLKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVAWTFADWCKLITSIESALDVRDGLALMRTSAGAAVTVGGRFGNESFLARLLDDIDPVVLRKCLEGLCTVIDPVASAQDKDVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPDDFTFAFAQ-GETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIADGSRVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQVAQMARTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHLSRKGRKCLFTLHFHEIF 557          
BLAST of mRNA_E_fasciculatus_S2_contig944.17479.1 vs.
Match: Mismatch (repair protein 5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMA2_9STRA)

HSP 1 Score: 297 bits (760), Expect = 4.400e-88
Identity = 186/494 (37.65%), Postives = 275/494 (55.67%), Query Frame = 1
Query:    1 MLKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVASTFADWCKLITSIESALDVRDGLALLR--------------TSAGAAV--TVDGSFGHE-AFLARLLDNIDSVVLRECLEGLCTVIDPVASAQDKEVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENS--VLEELSVEYVPQIGFFTTL--HERFGDLAPDDFTFAFAQQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDHFIPNDTFIADGSR----------------------------VVLITGANCSGKSVYLKQVGVTVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTSPADGIGLVAALLRHLSRKGRKCLFTLHFHEIFR 1335
            ML+PL  +  I  RQ+ VE+L+  E  E+       L K   + RI+ R+++  ST  DW  L  + E  L ++  LA+L               T+AG     T +GS+    A L   LD I    +    E L  V+D   + + K + +R G DEELD +R   + L + L +  + VL E S  +L ++SV+++PQ+GF   +  +ER        F F FA+ G+ +YYK+P M  +DD IGD+ A I D++  ++R+L + ++ EE AL  A    AELD  +A A +AG   +VRP V E+ V+++K+GRHPLQE+ V+ FIPND F+  G                              V ++TG N SGKSVY+K VGV VYLAH+G F+P  +A+IG+ D I TRIA+ ET ++ QSSFTID +Q+  + + ++P SL+L+DEFGKG++  DG+ L+ A L  L R G + L T HF E+F+
Sbjct:  282 MLRPLRSVRGIRERQNMVELLLHPEAMEVVTNAGMLLGKVGDIQRILTRMRRAGSTVNDWLTLANTAEHILLLQSCLAVLAHLTARLSSASDKGPTTAGEEEHRTNEGSYSSAMAMLQGFLDRISRQAVGRVSEALTKVLDLEITRESKSMAVRLGCDEELDRLRGDYDGLEEFLSEEARGVLAEQSSQLLSKISVQFLPQVGFLVIVQANERIAVENDPRFRFVFAE-GDALYYKTPRMDVLDDSIGDLSAAIQDREGLLLRQLAEEILKEETALAEAVRACAELDVLMAFAQLAGGLAWVRPMVTEERVVVVKDGRHPLQELTVETFIPNDVFLMGGDGNAVHRDGGDEKHAQKQGLEHCNQHGTRGVAVVTGPNFSGKSVYIKMVGVLVYLAHLGCFLPCRQALIGVVDSIRTRIASAETVTVQQSSFTIDCSQMNAVFQNASPSSLVLVDEFGKGSAETDGLALLVACLSRLQRLGARALVTTHFLELFQ 774          
BLAST of mRNA_E_fasciculatus_S2_contig944.17479.1 vs.
Match: DNA_MISMATCH_REPAIR_2 (domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E7P0_9STRA)

HSP 1 Score: 292 bits (747), Expect = 1.210e-86
Identity = 184/461 (39.91%), Postives = 260/461 (56.40%), Query Frame = 1
Query:    1 MLKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVASTFADWCKLITSIESALDVRDGLALLRTSAGAAVTVDGSFGHEAFLARLLDNIDSVVLRE-----CLEGLCTVIDPVASAQDKEVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFF------TTLHERFGDLAPDDFTFAFAQQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDHFIPNDTFIADGSRVVLITGANCSGKSVYLKQVGVTVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTSPADGIGLVAALLRHLSRK----GR-KCLFTLHFHEIFR 1335
            ML PL +   I+ R + V     AEN E+ + L  +L +   +  I  RIK+  ++  DWC+  TSI S L+ +    L+ ++     T D S          L N+ S VL E         L  +ID   S Q+  VVIR G  E LD++RER EDL ++L ++   V   N VL  + V+Y+PQ+G+       TTL          DF F F +   T YYK    RD+D+ IGDI   I D Q  ++ EL  A++  E ++H    +++ LD  ++ AS A  F F RP++ E N +     RHPLQE+ V+H+IPND F+     + ++TG N SGKSVYLK VG+  Y+A +G FVPAE A IGL  +IFTRI ++E++++ QSSFTID NQ+A M+     RSL LIDEFGKGT+  DGI L+++++ HL+ K    GR + + T HF EIFR
Sbjct:  301 MLTPLVNSMQINARLNAVAFFTAAENVELRQLLFGKLKQFRDVAGIFQRIKRRCASVGDWCRFATSIGSFLEAQS---LIESN---FETNDSS----------LPNVFSRVLSERGVTHVSNLLGNIIDFEESQQESTVVIRSGVSEALDSIRERYEDLDNVLTEVAFQVQEANPVLASIIVQYIPQVGYVICCDSPTTL---------PDFVFQFQEDDTTFYYKDACCRDLDESIGDIYGYILDMQKGLLEELTMAVLEYESSIHEITGIMSYLDCLISFASCAKSFNFSRPQITETNTLKASQARHPLQELLVEHYIPNDIFLDSCDSIKIVTGHNGSGKSVYLKMVGLLQYMAQIGCFVPAENAEIGLVTKIFTRIQSMESATVSQSSFTIDCNQMAWMLNHGGGRSLFLIDEFGKGTAELDGIALLSSIINHLATKSFTHGRPRVILTTHFLEIFR 736          
BLAST of mRNA_E_fasciculatus_S2_contig944.17479.1 vs.
Match: DNA_MISMATCH_REPAIR_2 (domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SGH8_9STRA)

HSP 1 Score: 290 bits (742), Expect = 4.200e-86
Identity = 174/451 (38.58%), Postives = 260/451 (57.65%), Query Frame = 1
Query:    1 MLKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVASTFADWCKLITSIESALDVRDGL-ALLRTSAGAAVTVDGSFGHEAFLARLLDNIDSVVLRECLEGLCTVIDPVASAQDKEVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPDDFTFAFAQQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDHFIPNDTFIADGSRVVLITGANCSGKSVYLKQVGVTVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTSPADGIGLVAALLRHLSRK----GR-KCLFTLHFHEIFR 1335
            ML PL     I+ RQ+ V     AEN E+ + L  +L +   +  I  RIK+  ++  DWC+ +TSI S L+ +  + ++  TS      V     +E  + ++ + + +VV            D   S Q+  VVIR G  E LD  RER EDL ++L ++   V   N VL  ++V+Y+PQ+G+              DF F F +   T YYK    RD+D+ IGDI   I D Q +++ EL  AL+  E ++H    +++ LD  ++ AS A  F F RP++ E N +     RHPLQE+ V+H+IPND F+     + ++TG N SGKSVYLK VG+  Y+A +GSFVPA+KA +GL  +IFTRI ++E++++ QSSFTID NQ+A M+     RSL L+DEFGKGT+  DG+ L+++++ +L++K    GR + + T HF EIFR
Sbjct:  274 MLTPLVSSVHINERQNLVAFFTDAENDELRQHLLGKLKRFRDVGGIFGRIKRRCASVNDWCRFVTSIGSFLEAQSLIESVCETSNSPLPNVFSRVKNERGVIQVSNLLGNVV------------DFEESQQESTVVIRSGVSETLDAARERYEDLDNVLTEVAFQVQEANPVLSSITVQYIPQVGYVICCES---PTTLPDFVFQFQEDDTTFYYKDACCRDLDESIGDIYGYILDIQRELLEELTMALLEYESSIHEMTWIMSYLDCLISFASCAKSFNFTRPQISEGNTLKAIQARHPLQELLVEHYIPNDIFLDSSDSLKVVTGHNGSGKSVYLKMVGLLQYMAQIGSFVPADKAEMGLVTKIFTRIQSMESATVSQSSFTIDCNQMAWMLNHGDGRSLFLVDEFGKGTAELDGVALLSSIINYLAKKRFTTGRPRVVLTTHFLEIFR 709          
BLAST of mRNA_E_fasciculatus_S2_contig944.17479.1 vs.
Match: DNA_MISMATCH_REPAIR_2 (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1J2_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.750e-84
Identity = 176/477 (36.90%), Postives = 262/477 (54.93%), Query Frame = 1
Query:   52 VEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVASTFADWCKLITSIESALDVRDGLALL-------RTSAGAAVTVDGSFGHE----------AFLARLLDNIDSVVLRECLEGLCTVIDPVASAQDKEVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENS--VLEELSVEYVPQIGFFTTL--HERFGDLAPDDFTFAFAQQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDHFIPNDTFIADGSR----------------------------VVLITGANCSGKSVYLKQVGVTVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTSPADGIGLVAALLRHLSRKGRKCLFTLHFHEIFR 1335
            VE+L+  E  E+       L K   + RI+ R+++  ST  DW  L  + E  L ++  LA+L        +++    T  G   H           A L   LD I    +    E L  V+D   + + K V +R G DEELD +R   + L + L +  + VL E S  +L ++SV+++PQ+GF   +  +ER        F F FA+ G+ +YYK+P M  +DD IGD+ A I D +  ++R+L + ++ EE AL  A    AELD  +A A +AG   +VRP V E+ V+++K+GRHPLQE+ V+ FIPND F+  G                              V ++TG N SGKSVY+K VG+ VYLAH+G F+P ++A+IG+ D I TRIA+ ET ++ QSSFTID +Q+  + + ++P SL+L+DEFGKG++  DG+ L+ A L  L R G + L T HF E+F+
Sbjct:    2 VELLLHPEAMEVVTNAGMLLGKVGDVQRILTRMRRAGSTVNDWLTLANTAEHVLLLQSCLAVLVHLTARLSSASDKGPTTAGEEEHRTNEGPYSSAMAMLQGFLDRISRQAVGRVSEALTKVLDLEVTRESKTVAVRMGCDEELDRLRGDYDGLEEFLSEEARGVLAEQSSQLLSKISVQFLPQVGFLVIVQANERIAVENDPRFRFLFAE-GDALYYKTPRMDVLDDSIGDLSAAIQDLEGLLLRQLAEEILKEEIALTEAVRACAELDVLMAFAQLAGGLAWVRPMVTEERVVVVKDGRHPLQELTVETFIPNDVFLMGGDGNAVHRDGDDEKHAQKQGLEHCNQNGTRGVAVVTGPNFSGKSVYIKMVGMLVYLAHLGCFLPCQQALIGVVDSIRTRIASAETVTVQQSSFTIDCSQMNAVFQNASPSSLVLVDEFGKGSAETDGLALLVACLSRLQRLGARALVTTHFLELFQ 477          
BLAST of mRNA_E_fasciculatus_S2_contig944.17479.1 vs.
Match: DNA_MISMATCH_REPAIR_2 (domain-containing protein n=24 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LZF6_PHYPR)

HSP 1 Score: 285 bits (730), Expect = 2.310e-84
Identity = 174/451 (38.58%), Postives = 256/451 (56.76%), Query Frame = 1
Query:    1 MLKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSY-GMTRIIMRIKKVASTFADWCKLITSIESALDVRDGLALLRTSAGAAVTVDGSFGHEAFLARLLDNIDSVVLRECLEGLCTVIDPVASAQDKEVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPDDFTFAFAQQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDHFIPNDTFIADGSRVVLITGANCSGKSVYLKQVGVTVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTSPADGIGLVAALLRHLSRK----GR-KCLFTLHFHEIFR 1335
            ML PL     I+ R + V      EN E    LR  L K +  +  I  RIK+  ++  DWC+ ITSI S L+ +    L+  ++  +++   S        R + ++ ++        L  V+D   S Q+  VVIR G  + LD  R+R EDL ++L ++   V   N VL  ++V+Y+PQ+G+              DF F F +   T YYK    RD+D+ IGDI   I D Q +++ EL  AL+  EG++H    +++ LD  ++ AS A  F F RP + E + +     RHPLQE+ V+ +IPND F+     + ++TG N SGKSVYLK VG+  Y+A +GSFVPAEKA IGL  ++FTRI ++E++++ QSSFTID NQ+A M+     RSL LIDEFGKGT+  DGI L+++++ +L+ K    GR + + T HF EIFR
Sbjct:  277 MLTPLVSNTHINERHNSVAFFTDTENDE----LRQLLLKHFRDVAGIFQRIKRRCASVGDWCRFITSIGSFLEAQS---LIEDASETSISPLPSVFSRVKSERGVTHVSNL--------LGNVVDFEESQQESTVVIRSGISDTLDAARQRYEDLDNVLTEVAFQVQEANPVLSSITVQYIPQVGYVICCES---PTTLPDFVFQFQEDDTTFYYKDACCRDLDESIGDIYGYILDLQRELLEELTMALLEYEGSIHEMTWIMSNLDCLISFASCAKSFNFTRPLISEGSTLKATQARHPLQELLVERYIPNDIFLDSSDSITVVTGHNGSGKSVYLKMVGLLQYMAQIGSFVPAEKAEIGLVTKVFTRIQSMESATVSQSSFTIDCNQMAWMLNHGDGRSLFLIDEFGKGTAELDGIALLSSIINYLATKRLTPGRPRVVMTTHFLEIFR 709          
BLAST of mRNA_E_fasciculatus_S2_contig944.17479.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C711_PYTOL)

HSP 1 Score: 280 bits (717), Expect = 1.140e-82
Identity = 171/450 (38.00%), Postives = 259/450 (57.56%), Query Frame = 1
Query:    1 MLKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVASTFADWCKLITSIESALDVRDGLALLRTSAGAAVTVDGSFGHEAFLARLLDNIDSVVLRECLEGLCTVIDPVASAQDKEVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPDDFTFAFAQQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDHFIPNDTFIADGSRVVLITGANCSGKSVYLKQVGVTVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTSPADGIGLVAALLRHL-----SRKGRKCLFTLHFHEIFR 1335
            ML PL D+A I++R D VE L + +  E+ + +R++L     ++ I  RI+   ++ ++W K+  SI S L +++ L     S  +++           L  +L     + +   L     +ID   SAQ++ +VIR G  + LD  R + EDL ++L ++   +      L  ++V+Y+PQ+G+           A  DF F F +   T YYK    RD+D  IGDI   I D Q  ++ EL  AL+  E  +   A ++++LD   ALA VA +F + RP V E+N  MI   RHPLQE+ VD +IPNDT ++D   V+++TG N SGKSVYLK VG+  Y+A +GS+VPA +A IG+  ++FTRI ++ET+S+ QSSFTID NQI +M++    RSL LIDEFGKGT+ ADG  L+AA + +L     + +  + + T H  +IFR
Sbjct:  263 MLAPLLDVAIINMRLDAVEYLCKPDVDELRKAIRARLKCFGDVSGIFNRIRSRCASVSEWNKVSESIGSYLALQNLLQEHEASQSSSMP--------PLLCDILGERSMIHVSNLLGN---IIDFEESAQEEHIVIRAGVSDVLDAARAKYEDLDNVLTEVAYQIQESQPSLSSITVQYIPQVGYVICCEAA---TALPDFVFQFQEDDTTFYYKDSCCRDLDATIGDIFGFILDLQRDLLEELTVALLQYEHCIFEMAGIVSKLDCISALADVAKNFNYRRPTVTEENEFMINTARHPLQELIVDQYIPNDTKLSDDRVVMVVTGQNGSGKSVYLKMVGLLQYMAQIGSYVPAHEAQIGIVRKMFTRIHSMETASISQSSFTIDCNQIVRMLQHGQERSLFLIDEFGKGTAEADGTALLAATINYLVAKPPTERDPRVIITTHLLDIFR 698          
BLAST of mRNA_E_fasciculatus_S2_contig944.17479.1 vs.
Match: Hypothetical (protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BRA8_9STRA)

HSP 1 Score: 283 bits (723), Expect = 3.200e-82
Identity = 178/471 (37.79%), Postives = 278/471 (59.02%), Query Frame = 1
Query:    1 MLKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVASTFADWCKLITSIESALDV----RDGLALLRTSA---GAAVTVDGSFGHEAFLARLLDNIDSVVLRECLEGLCTVIDPVASAQDKE--VVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPD---------DFTFAFAQQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVV--------EDNVIMIKNGRHPLQEMAVD-HFIPNDTFIADGSRVVLITGANCSGKSVYLKQVGVTVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTSPADGIGLVAALLRHLSRKGRKCLFTLHFHEIF 1332
            M +PL D  AI  R D VEV ++   ++I   LR+ L     + RI++R++K  +  AD+  L  ++ +A+ V     +   +L T+      +   +   G    +  +L  +    +R   E + +++D  A+   K   VVI  G+D  LD+ +E  E+L   L ++G+ VL+++  L++L + ++PQIGF  ++ +R  D  P+          F+F F Q  E+ ++K+P M+ +DD IGD+ A I D +  I+ +LE+ ++  E  L      LAELD  LA AS A D  +VRP+VV        +D+VI I+ GRHPLQE+ V  +FIPNDT   + +R+ +ITG N SGKS Y +QVG+ VY+AH+GSF+P ++A I + D+I  RI++VET ++PQSSF +D+ Q+A ++R ST  SL+LIDEFGKGT+PA GI ++ + L+ L   G K + T HF EIF
Sbjct:  418 MERPLQDAQAIERRLDTVEVFLRPNLSQIASSLRNHLGMMGPVDRILLRMQKCVTKAADFLALSRTLSAAVGVMGLLEEAWRILDTNTTPQNPSNQEEERTGAHFVIWNMLARLRINTVRALHEQITSIVDEEATMDGKCECVVIHFGYDVGLDSAKEAFENLDGTLSRVGEEVLHKHPELKQLKIVFLPQIGFLISIDKRHHDHNPETNVYPSLHTSFSFVFTQDNES-FFKNPDMKRLDDEIGDLDAFIKDTEGLIVSDLEEDILDCEIDLRETFGSLAELDCLLAFASCAADMDYVRPQVVGHENKSDDDDHVIYIEGGRHPLQELIVGGNFIPNDTAADNENRINIITGPNFSGKSCYARQVGLLVYMAHLGSFIPCKRARISIIDQILARISSVETCAIPQSSFQLDLTQMAVILRRSTKNSLVLIDEFGKGTAPASGISVLTSALKKLVSVGCKVICTTHFLEIF 887          
BLAST of mRNA_E_fasciculatus_S2_contig944.17479.1 vs.
Match: DNA_MISMATCH_REPAIR_2 (domain-containing protein n=10 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LZG1_PHYPR)

HSP 1 Score: 270 bits (690), Expect = 5.250e-80
Identity = 163/421 (38.72%), Postives = 237/421 (56.29%), Query Frame = 1
Query:    1 MLKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSY-GMTRIIMRIKKVASTFADWCKLITSIESALDVRDGLALLRTSAGAAVTVDGSFGHEAFLARLLDNIDSVVLRECLEGLCTVIDPVASAQDKEVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPDDFTFAFAQQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDHFIPNDTFIADGSRVVLITGANCSGKSVYLKQVGVTVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTSPADGIGLV 1260
            ML PL     I+ R + V      EN E    LR  L K +  +  I  RIK+  ++  DWC+ ITSI S L+ +    L+  ++  +++   S        R + ++ ++        L  V+D   S Q+  VVIR G  + LD  R+R EDL ++L ++   V   N VL  ++V+Y+PQ+G+              DF F F +   T YYK    RD+D+ IGDI   I D Q +++ EL  AL+  EG++H    +++ LD  ++ AS A  F F RP + E + +     RHPLQE+ V+ +IPND F+     + ++TG N SGKSVYLK VG+  Y+A +GSFVPAEKA IGL  ++FTRI ++E++++ QSSFTID NQ+A M+     RSL LIDEFGKGT+  DGI L+
Sbjct:  258 MLTPLVSNTHINERHNSVAFFTDTENDE----LRQLLLKHFRDVAGIFQRIKRRCASVGDWCRFITSIGSFLEAQS---LIEDASETSISPLPSVFSRVKSERGVTHVSNL--------LGNVVDFEESQQESTVVIRSGISDTLDAARQRYEDLDNVLTEVAFQVQEANPVLSSITVQYIPQVGYVICCES---PTTLPDFVFQFQEDDTTFYYKDACCRDLDESIGDIYGYILDLQRELLEELTMALLEYEGSIHEMTWIMSNLDCLISFASCAKSFNFTRPLISEGSTLKATQARHPLQELLVERYIPNDIFLDSSDSITVVTGHNGSGKSVYLKMVGLLQYMAQIGSFVPAEKAEIGLVTKVFTRIQSMESATVSQSSFTIDCNQMAWMLNHGDGRSLFLIDEFGKGTAELDGIALL 660          
BLAST of mRNA_E_fasciculatus_S2_contig944.17479.1 vs.
Match: mutS (protein homolog 5-like n=2 Tax=Actinia TaxID=6104 RepID=A0A6P8HDN3_ACTTE)

HSP 1 Score: 270 bits (690), Expect = 3.110e-79
Identity = 166/455 (36.48%), Postives = 252/455 (55.38%), Query Frame = 1
Query:    4 LKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRIKKVASTFADWCKLITSIESALDVRDGLALLRTSAGAAVTVDGSFGHEAFLARLLDNIDSVVLRECLEGLCTVIDPVASAQDKEVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNE-NSVLEELSVEYVPQIGFFTTLHERFGDLAPD-DFT-----FAFAQQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDHFIPNDTFIA-DGSRVVLITGANCSGKSVYLKQVGVTVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTSPADGIGLVAALLRHLSRKGRKC---LFTLHFHEIFR 1335
            ++P  +I  +S RQ  +   M   N E+   L+  L     ++RI+ R+K   ++  DW  L  ++ +A+ + D           A  +   F HE  L R+ D I+ +V            D   SA+    V++PG D  LD  +     LPD + ++ +  L++  S + E +V Y+PQ+G+  ++  R  D+  + DF      F F      VYYKS + +++D  +GD Q  ITD +  IM  L+  ++     L       AELD  ++LA  A +  +VRPE+  D+++ IK GRHPLQE+ V+ F+PNDT    D  R+ ++TG N SGKSVYLKQVG+ V++AH+GSFVPA+ A+IG+TDRIFTRI T ET S+  S+F ID+ Q+A  V+ +T  SL++IDEFGKGT+  DG+ L+ A L+H      +C     + HFH + R
Sbjct:  203 MRPTRNIEVLSQRQKAINFFMLPRNQELVSSLQDCLKNIKNISRILSRMKTAQASVTDWQALYKTVYNAIYIADLCRTFPADVVIATKIKDHFTHE--LPRVADLINKIV------------DFEESAEQNRFVVKPGVDPVLDEKKRTYNGLPDFMTKVAREELSKLRSSVTECNVIYLPQLGYLLSI-PRTADMKEEKDFEMEGLEFVFLSNN-MVYYKSESTKELDLLLGDTQCEITDHETAIMHRLQSIILTHGKTLLGMMECAAELDCLVSLAICARESNYVRPEITSDSILDIKGGRHPLQELCVNQFVPNDTSKEKDKGRMTILTGPNASGKSVYLKQVGLIVFMAHIGSFVPADSAIIGVTDRIFTRIHTRETVSIGLSTFMIDLGQVATAVQGATEHSLVIIDEFGKGTATVDGLSLLCATLKHWLAFNERCPRIFVSTHFHSLIR 641          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig944.17479.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
MutS7.530e-29396.17protein homolog 5 n=1 Tax=Ectocarpus siliculosus T... [more]
Mismatch4.400e-8837.65repair protein 5 n=1 Tax=Nannochloropsis gaditana ... [more]
DNA_MISMATCH_REPAIR_21.210e-8639.91domain-containing protein n=8 Tax=Phytophthora Tax... [more]
DNA_MISMATCH_REPAIR_24.200e-8638.58domain-containing protein n=1 Tax=Phytophthora cac... [more]
DNA_MISMATCH_REPAIR_21.750e-8436.90domain-containing protein n=1 Tax=Nannochloropsis ... [more]
DNA_MISMATCH_REPAIR_22.310e-8438.58domain-containing protein n=24 Tax=Phytophthora pa... [more]
Uncharacterized1.140e-8238.00protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical3.200e-8237.79protein n=3 Tax=Corethron hystrix TaxID=216773 Rep... [more]
DNA_MISMATCH_REPAIR_25.250e-8038.72domain-containing protein n=10 Tax=Phytophthora pa... [more]
mutS3.110e-7936.48protein homolog 5-like n=2 Tax=Actinia TaxID=6104 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig944contigE_fasciculatus_S2_contig944:19141..25700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score818.1
Seed ortholog evalue1.9e-234
Seed eggNOG ortholog2880.D7FKD9
Preferred nameMSH5
Model size1344
KEGG koko:K08741
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000710,GO:0000712,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0007276,GO:0007292,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0010777,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0048609,GO:0050896,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Exons12
EggNOG free text desc.chiasma assembly
EggNOG OGsCOG0249@1,KOG0221@2759
Cds size1344
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig944.17479.1prot_E_fasciculatus_S2_contig944.17479.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig944 19141..25700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842592.694503-CDS-E_fasciculatus_S2_contig944:19140..191851696842592.694503-CDS-E_fasciculatus_S2_contig944:19140..19185Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 19141..19185 +
1696842592.7104304-CDS-E_fasciculatus_S2_contig944:20051..201621696842592.7104304-CDS-E_fasciculatus_S2_contig944:20051..20162Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 20052..20162 +
1696842592.7243223-CDS-E_fasciculatus_S2_contig944:20658..208151696842592.7243223-CDS-E_fasciculatus_S2_contig944:20658..20815Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 20659..20815 +
1696842592.7377722-CDS-E_fasciculatus_S2_contig944:21231..213231696842592.7377722-CDS-E_fasciculatus_S2_contig944:21231..21323Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 21232..21323 +
1696842592.7524352-CDS-E_fasciculatus_S2_contig944:21735..218191696842592.7524352-CDS-E_fasciculatus_S2_contig944:21735..21819Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 21736..21819 +
1696842592.7657514-CDS-E_fasciculatus_S2_contig944:22209..223411696842592.7657514-CDS-E_fasciculatus_S2_contig944:22209..22341Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 22210..22341 +
1696842592.7763064-CDS-E_fasciculatus_S2_contig944:22464..225541696842592.7763064-CDS-E_fasciculatus_S2_contig944:22464..22554Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 22465..22554 +
1696842592.7870307-CDS-E_fasciculatus_S2_contig944:23105..232461696842592.7870307-CDS-E_fasciculatus_S2_contig944:23105..23246Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 23106..23246 +
1696842592.797278-CDS-E_fasciculatus_S2_contig944:23608..236591696842592.797278-CDS-E_fasciculatus_S2_contig944:23608..23659Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 23609..23659 +
1696842592.8079667-CDS-E_fasciculatus_S2_contig944:24098..242091696842592.8079667-CDS-E_fasciculatus_S2_contig944:24098..24209Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 24099..24209 +
1696842592.8198197-CDS-E_fasciculatus_S2_contig944:24815..249651696842592.8198197-CDS-E_fasciculatus_S2_contig944:24815..24965Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 24816..24965 +
1696842592.8375041-CDS-E_fasciculatus_S2_contig944:25520..257001696842592.8375041-CDS-E_fasciculatus_S2_contig944:25520..25700Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig944 25521..25700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig944.17479.1

>prot_E_fasciculatus_S2_contig944.17479.1 ID=prot_E_fasciculatus_S2_contig944.17479.1|Name=mRNA_E_fasciculatus_S2_contig944.17479.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=448bp
MLKPLHDIAAISVRQDGVEVLMQAENAEICRRLRSQLSKSYGMTRIIMRI
KKVASTFADWCKLITSIESALDVRDGLALLRTSAGAAVTVDGSFGHEAFL
ARLLDNIDSVVLRECLEGLCTVIDPVASAQDKEVVIRPGFDEELDNMRER
LEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPDD
FTFAFAQQGETVYYKSPTMRDVDDRIGDIQALITDKQAKIMRELEDALIA
EEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPL
QEMAVDHFIPNDTFIADGSRVVLITGANCSGKSVYLKQVGVTVYLAHVGS
FVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRS
LLLIDEFGKGTSPADGIGLVAALLRHLSRKGRKCLFTLHFHEIFRCV*
back to top

mRNA from alignment at E_fasciculatus_S2_contig944:19141..25700+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig944.17479.1 ID=mRNA_E_fasciculatus_S2_contig944.17479.1|Name=mRNA_E_fasciculatus_S2_contig944.17479.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6560bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig944:19141..25700+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGAAGCCCCTGCACGACATTGCCGCCATCAGCGTCCGACAGGTACG ATAAACACAGCCCCCAAATTGTCCGAGGCATAGACACACACACACATATA TATGAGGCAGACCGTTGAGCAAGCAGTAACGAATGGACCTTCCTACCACG GTCACGGCCCTGATTTCTACGGTAGCGCAGATGCCGAGTCTGACCCCCCT GCGCTAGCATACGGCAGACTTTGTTAGCCTTCAGAGTGAACATGTACGGG AATACCGGCAGACCATGTGTCCTTTATCGGCTTTCAACCAGAATCATCCA CACTTTCAGGGTCACGGAATATACGAAAGTTTGGGTCATTCAACGAGGCT CCCGGTCAGTCGTCGAGAAGAGGACGGGACAAGGAAAGTATGGGTGAGGC CACAGGCCAGAGCTGGACGCCTCATCCAAAATCTAATACATTATGTGATC CTCGGCCACGAGCAATACAAACTACATCTTCTGTACTAAGAGAGGCGCGA GCGCACAACGGACAAGGGGGATTTCCTTTCGTGGTTGGTACATCATGGCC GATAACGCGTTGATGTTCTTGTCAGCTTGTTGTCGAGGAGGTGTTAGGAT TGTTCAAGCCGGGGTTCAGCCTGTGAGATTCAAACTATGGAGCACATGGG AAAGGATGAATTAATGAGAGCGATGAATCACGACATGCTGTTCATGTGAG CGACGTTGCCTCCATTGCGTTTGGAGAGCATCCCGAACTTGGAACCTGCT CCGAATTTGCTGTCGTCTGCTTTTACCGCCCTTCCAAACCTGCGTTGCAT GGCACACGCTTGAAACTCCAGCTTTACTTTGATACGGACAGGCTTTGTCG CACAGCACAACAATCTATTGTTTCGCCTTCCTTGAAATATTGTGCAAATC TTCAACAACAGGACGGTGTCGAGGTTCTCATGCAAGCAGAGAATGCTGAG ATCTGTCGACGACTAAGGTCCCAGCTGAGCAAGTCGTACGGCATGACTCG GATTATCATGCGAATCAAGAAGGTAGGAACTCCGAGGATTCCTAGGGAGA GGGAACATGCCAAATAAGTGGGGGGGGGGGGTTTGGGAGGTATGCGGGGG GAGGCCGGGACGGTGTTTCTCACAATATTTTGACGGCACGCAATACACAA CTTCGAGACGAGGTACGTGGGGCAATGAGATACGAAGAGCAGCCACACCT GGTAGAATGCTAAGCACATGATGGCTCCAGATTATGTTTCAGGTTGGTTG CAAGGAAGCACGGGAACGTTCAATTATCTATGCATCCAAGTGTGTGTTGA TTAGTGCCTCTTGATGACGGTGACACCGGAGATCGTCTTTGCAGAACCAA TAGGTCAATTCGCCTCGGCCGCAGCACCTTCGCGTAACATTGTCTTCGCC GATGACTGGCGTGAAGTCGGAGTCAATCCGTAGCCGTTCCTTTGCTAGCC CGGGTATTAGATTGGCAACGCCGCCTGGATCGCGTCTTGGGATCCGATCG TCTCAAACCAAACAAAAGGTGGCCTCGACGTTCGCGGACTGGTGCAAGTT GATCACGTCCATAGAGTCTGCCCTCGACGTCCGGGACGGGCTCGCGCTCC TAAGGACTAGCGCTGGCGCGGCGGTCACCGTGGACGGGAGCTTCGGGCAC GAGGCGTTCCTTGCACGCCTCTTAGGTGGAGTTTTTCATTGAGCCTCGCA CCTACAGCACGATATTCCAGCTCGTGTTTAGCGACTATTGTGTCAAGTCA AGATATCAACCTGATTGGTACATGGAACGTGTACCCACTGCAACAGGTCA CAACGCGTTCGGAAGTATTTATCGACCTCGTCCAGCGATAGACAACACTT TTTGCCTAAAATTCAATCGAAAGGCAACAATAGGTCTCACGCGGCGCCGA GGTTGCTAACCAAGCAAAGCCTATGACCCATGCTACCGATCAACCAGCAG AGGCCGAAAGCTCCGACGTTAAGCTAACATTCGAAGATACTTCCAACTAC CGGCTAATGGTTCCAGCGGGCACACCGCTACGTATGTGTGTGGTTCCTTC GTGTACAGTATAACCGGACCTTGAAACCGCACCGTATGCAGATAACATCG ATTCTGTTGTGCTGCGGGAGTGCTTGGAGGGCTTGTGTACGGTCATCGAC CCGGTCGCGAGCGCACAGGACAAGGAAGTCGTGGTGAGCCTTCAGACTTG TCGGAGCATCACCTGCTGTTTCTAGAGACGGATGTACAGAATCATCCTCG GAACGTTGCGATGGTGGAAAGTCGGCCCATCGCACTACTGCCAATGTGTG AAACCGTCTTGAAGGGAGTTATTAAGGTACCTTCGCGTTCTTGGGGAAAG TTACCCAGCGACCATAGACTCCCAAATGCGTAGGTGTTGGGTCTACCGTG TGTTTCTGGGCACGTTTCTTGAGGGAAACAATCGCGTTTGTCCTGTGCGA TGCTCATTGACGCATCCTGCGTCGGCGAGCATCGGCGAGCCTCGGCGTGT CGGGTGTCCTGGTATATAGTTGGCTGTTTTGCGCACGTCGACGTGCACCA AGTGTGTCGACCCGTAAGCATTCGCGCCATCTCTCGTGATAATAGATTCG TCCGGGGTTCGATGAAGAGCTGGACAATATGAGAGAACGCCTGGAAGATC TACCGGACATTCTTCAACAAATTGGCCAGGTGCGGTGCTTGAAAAACGTG TACGCAAATAGGGTGGGCGAGGGCCTTCTTGACCCTATAGCTGCCGCTTT TCGAAGACATTCGTCCCTACAAGAGTGGTATTCACGGCAATTCCAGTCTG CCCCGCTGGTTTGTGGTACGCGTAAACGGTCAGACATCTACAGCCTGGGC CGTTGTTGTTGTTGTTCTAGTCCACACTCTCCCGTCCTACCTTCTGCGAT TGGTGGCATGCGAGTGGCTGTCGATTCAGCTGATCTTTGGCCGGTGAGTC CATTCGGCCTTCCATCCGCTCTTCAGCACATGATCTTGAACGAAAAACAA ACTTGTCGGCTCATACCCCCCAGCTTGAGCGGCACATCATTCTCCGTGCT GGACCTACTCGATCCGCAGATCGTCCTCAACGAGAACTCCGTGCTGGAAG AGCTGAGCGTGGAGTACGTCCCCCAAATCGGATTCTTCACCACCCTGCAC GAGCGCTTCGGCGATCTTGCACCGGACGACTTCACCTTCGCATTTGCTCA GGTAGGTACCGATGGTCGACGCTACTGTGAATCTCCGGCACTTGCGGCTG CCTTTTCACTTGGCGTGTATTTTGTTTCCTTAATCAATTATCTTCGTCGC TGTTTCGCGCTGACGGGGTCTAAGCAGGGCGAGACGGTGTACTACAAGAG CCCAACTATGCGTGATGTGGACGATCGTATCGGAGATATTCAGGCGCTCA TCACCGACAAGCAGGTGCATGGTCCAAACTCTGGCGTACATGGAGCTGGT TTCGTTGTTGCTGTTGCTAGTTTTGGTATTATTGCGAGCTGGTCTGGTGA AATATTGGTATTCTCGGTAAAACGTTCGGTTTCCTCTCCCGCAAGGAACT TTTCAGCTTCACATGCAAAGTGATAGAGTGCTCAGATTCTGCAAGCGGTG GCAAGCTAACGGGATAAGAAATGCACAATAACGGGTCTCCTACACCGGTC CATGCGGTGTCTGTGGCATCGCCAGTACATCAAGGAAACCGTTTGCAGCC GTCCGGGGGCTGACCTTGTGAAACGTGTCCGGGCGAGCTGATAAGCCAGG GCGACGGACAACAACAAGGACGCGCTGCAAACATCATATATTTGGCGTGC ACACCGATTACCGACCGGTTTCGAACTGGTGCACGTAGAGCACAGGAAAA TGCCCAACCGAACCAGCATGTGGCCTGCGTAAATTACAGGCATGTCTTTG CGTCGTCGTAAAAGTTTGTACGAGCTCAATGTTGTGTTCCTTCCCAACAC ATGCGACGTTTCAAGGCGAAGATCATGCGAGAGCTCGAAGATGCATTGAT TGCGGAAGAGGGCGCCTTGCACGCGGCTGCATCTGTCTTGGCGGAGCTTG ACGCGGCTTTGGCCCTGGCCTCCGTGGCAGGAGACTTCGGCTTCGTACGA CCGGAGGTATCAAAGCAGGGTGAAACTCTACCTCACTCGTGTTCCCACGA TCATGGCATGGGGTCTAGAGCAAATTGCCTTTAGACGTCCGGCAAGGCAC ACACCGATCAGGACGTGCATCCTCTGCCTCTTTCACGAAGTGTGCCCCTC GGTTTTGCAACGGATTCAGCATCTCGAGCAACGCCTTGAACGGCGTGAAG CCCTCGATTCTACCGAGAGCGTGGAAGCTTTTTTGCCCCAGCCAAGTCAG GCATGGCGGAAAACGTCATCGTATCACGGCGGTTGCAGTGCTTTCACGAC GCATGTCTCCTACCCTGGAGACCGGCAATGATGTTTCGTTTGCGGTTTTG TCCTGTTTCATATTCCAGGTGGTGGAGGATAACGTGATCATGATCAAGAA CGGGCGGCACCCTCTTCAGGTGAGGACCTCGATCCCGGGTTGCGCGCCTC ACTCATCGAATCTGTAGAGCTCGGCGATGGGGTGTTCTTCCCCGCGGAAG GCGTGATGCATCCAAAATGAACGTGATACATTTGTGGGCGACGGTTCCAA CACTTGAAGAGTCTCTACCACCCTTCTGTGTAATAATCCAGGCGTGGGGG ATGCCCATGTTGCTCGTCCATTGCCTGAACCGATTAATACCCTTCGACGG TTACACGCCAGACCATTCCAAGTTGCTGGAAGGATGGTCCCGAGAGCAGC ATTGCACAGAATCCCGTCAAAGTGTTGTGAACAAGGCCGAGCGGTCAGAT CAACGAAGGGTGGTAGGTACTAGATAGAGCGTCCGTCCACGCTCGAAAGG TTCTCGGCAAGTGGCGAAAGAGTTGTCTGTGTTTACCCCCGTTTCTCTCC TTGACCAGGAAATGGCCGTGGACCACTTCATCCCGAACGACACCTTCATT GCGGACGGCAGCCGGGTGGTACTCATCACCGGGGCGAACTGCTCGGGAAA GAGCGTATACCTCAAACAGGTCAGCGTGCACACACAGGTCGGCCGCAATG CTACTGTATTAGGTCTGCGCGAGCGAAAGGCAGGCGCGTTGTGCACTCAT CGATACCATTTCGGGCACACGCTGGTATGAAGAACGCTGTGTTTTTCGAA CACATCGACGATAGGCACGATAGGCATGCCTATATGTGCAATGCCGGAAG AGAACGCTTCACCGTGCGCACTCACAATGCTTTCGGTTCTGATCTGAGAC CTCTCGCCCGTAGGAAATTTCAGAGAGTCACAGATTTCGAGGTTAAGGTG GTGGCATACATTAAAACAATAATGGTAATTCTGCATCCCAAACATATATC TCGCGTCAAGCTTTCTGACACTCCATCTTTTCCGTATGAGAGGACTAAAT GTTTTTCGCAACCATTGTTTCTGAGTTTCAGGAAAGGGGGGTGCCGGGCC GTATTTCTGCTGGCGTGAGTGCGGCCTCTATATGTGTCGGAGTATGCTGT ACAAAGCCATCAGCTCCCACAGCTTTCCCGACCGGTTTTGTCCCCATGGT TAGCTTTTAGGGCGGGCGAACCCCGATTCTCAGCAAAACAGGAACGCTCC GAACCATGCTCTATTCCGGTTGTAGGTCGGAGTGACGGTATATCTGGCGC ACGTTGGATCGTTTGTCCCAGCGGAAAAGGCGGTCATCGGCTTGACCGAC CGCATTTTTACTCGAATTGCAACAGTGGAGACGTCCTCCCTGCCACAGAG CTCGTTCACTATCGACGTAAACCAGGTATGTGGGCTACGGCAGGGGATAC GCAAAGGCACTGTGGTGGGGGATTCCTGACATTTCCTACCCGAAAAAGAC AGTCCAACGCCGAAAAGCGCAGTATTCTCACCAAAGTAGACCATTTTTCT GCAGTAAGCGCTCCAACAACACACGTCGAGTCACTCCACCGTCGGTCTGC CGGGAAAATACTGCCAAACATTGTCAAAACCACTTATTTCAGCCATATAT CATCAAGGTCGCAAAAGCTCTTTGCTCAAACTATTTCGAAGAGTATGGAG TACCCGAACTTCTGCTAAAAGTCGGTAGTACCTTATTTGCAATCGCTGGG AGCACCTGCGTTCAGGATCCCGTCAATAACTCAGGCCCAGAATGTGCAGC CTCTGCCGCTGCAAGCCCTAGGTCTGGGAGAAGTCTCTTTCGATATTTAA AATGACCCAAAATATATTTCTGGTTGTAGGTGCTGTCTCGATGAAGTGCA GCAAGTCAACCGGGCACAGCGAAAAACAGATGCGGCAAGCTTGGCCGCCG TACGTTCCCTCCGTCCTCTCACACGTGCAGATTGCCCAGATGGTGCGTAC CAGCACCCCGAGATCTCTCCTACTCATCGATGAGTTCGGCAAGGGCACCT CCCCCGCTGACGGCATCGGGCTGGTGGCGGCCCTGCTGCGCCATCTCTCC CGCAAGGGTCGCAAGTGCCTCTTCACTCTACACTTTCATGAGATATTCAG GTGTGTTTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig944:19141..25700+

>mRNA_E_fasciculatus_S2_contig944.17479.1 ID=mRNA_E_fasciculatus_S2_contig944.17479.1|Name=mRNA_E_fasciculatus_S2_contig944.17479.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1344bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig944:19141..25700+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGAAGCCCCTGCACGACATTGCCGCCATCAGCGTCCGACAGGACGG
TGTCGAGGTTCTCATGCAAGCAGAGAATGCTGAGATCTGTCGACGACTAA
GGTCCCAGCTGAGCAAGTCGTACGGCATGACTCGGATTATCATGCGAATC
AAGAAGGTGGCCTCGACGTTCGCGGACTGGTGCAAGTTGATCACGTCCAT
AGAGTCTGCCCTCGACGTCCGGGACGGGCTCGCGCTCCTAAGGACTAGCG
CTGGCGCGGCGGTCACCGTGGACGGGAGCTTCGGGCACGAGGCGTTCCTT
GCACGCCTCTTAGATAACATCGATTCTGTTGTGCTGCGGGAGTGCTTGGA
GGGCTTGTGTACGGTCATCGACCCGGTCGCGAGCGCACAGGACAAGGAAG
TCGTGATTCGTCCGGGGTTCGATGAAGAGCTGGACAATATGAGAGAACGC
CTGGAAGATCTACCGGACATTCTTCAACAAATTGGCCAGATCGTCCTCAA
CGAGAACTCCGTGCTGGAAGAGCTGAGCGTGGAGTACGTCCCCCAAATCG
GATTCTTCACCACCCTGCACGAGCGCTTCGGCGATCTTGCACCGGACGAC
TTCACCTTCGCATTTGCTCAGCAGGGCGAGACGGTGTACTACAAGAGCCC
AACTATGCGTGATGTGGACGATCGTATCGGAGATATTCAGGCGCTCATCA
CCGACAAGCAGGCGAAGATCATGCGAGAGCTCGAAGATGCATTGATTGCG
GAAGAGGGCGCCTTGCACGCGGCTGCATCTGTCTTGGCGGAGCTTGACGC
GGCTTTGGCCCTGGCCTCCGTGGCAGGAGACTTCGGCTTCGTACGACCGG
AGGTGGTGGAGGATAACGTGATCATGATCAAGAACGGGCGGCACCCTCTT
CAGGAAATGGCCGTGGACCACTTCATCCCGAACGACACCTTCATTGCGGA
CGGCAGCCGGGTGGTACTCATCACCGGGGCGAACTGCTCGGGAAAGAGCG
TATACCTCAAACAGGTCGGAGTGACGGTATATCTGGCGCACGTTGGATCG
TTTGTCCCAGCGGAAAAGGCGGTCATCGGCTTGACCGACCGCATTTTTAC
TCGAATTGCAACAGTGGAGACGTCCTCCCTGCCACAGAGCTCGTTCACTA
TCGACGTAAACCAGATTGCCCAGATGGTGCGTACCAGCACCCCGAGATCT
CTCCTACTCATCGATGAGTTCGGCAAGGGCACCTCCCCCGCTGACGGCAT
CGGGCTGGTGGCGGCCCTGCTGCGCCATCTCTCCCGCAAGGGTCGCAAGT
GCCTCTTCACTCTACACTTTCATGAGATATTCAGGTGTGTTTGA
back to top