mRNA_E_fasciculatus_S2_contig9436.17474.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9436.17474.1
Unique Name	mRNA_E_fasciculatus_S2_contig9436.17474.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.
Match: Flagellar (associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG1_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 2.260e-57
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1

Query:    4 KGEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQMDELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEE 315
            KGEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQM+ELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEE
Sbjct:  654 KGEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQMEELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEE 757

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BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW42_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.800e-46
Identity = 83/105 (79.05%), Postives = 92/105 (87.62%), Query Frame = 1

Query:    4 KGEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQMDELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEEV 318
            KGE  Y+ RL DIRTLKLK  DL R+L IA+ S+NQMD+LRREVFQLQR+LLQEK KVKALSEELENPMNVHRWRKLEGSDP T+EMIQKI  LQ+RLI+KTEEV
Sbjct:   68 KGETQYTQRLQDIRTLKLKTTDLHRELRIAKSSNNQMDDLRREVFQLQRELLQEKTKVKALSEELENPMNVHRWRKLEGSDPATYEMIQKIQMLQRRLITKTEEV 172

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BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.
Match: Flagellar (associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGY9_9STRA)

HSP 1 Score: 152 bits (385), Expect = 8.570e-41
Identity = 75/106 (70.75%), Postives = 91/106 (85.85%), Query Frame = 1

Query:    1 SKGEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQMDELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEEV 318
            +KGEA Y+ R++D+R L+LK  DL RDLA+ + SSNQ++EL+RE   ++RDLLQEK KVKALSEELENPMNVHRWRKLEGSDP  FEMIQK+ TLQ+RLI+KTEEV
Sbjct:  630 AKGEASYAQRMVDLRALRLKAQDLARDLALCKNSSNQVEELKREALHMRRDLLQEKTKVKALSEELENPMNVHRWRKLEGSDPAMFEMIQKVQTLQRRLIAKTEEV 735

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BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RGV6_9STRA)

HSP 1 Score: 143 bits (361), Expect = 6.050e-40
Identity = 73/104 (70.19%), Postives = 83/104 (79.81%), Query Frame = 1

Query:    7 GEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQMDELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEEV 318
            GE+ Y  RL D+R LKLK GD+ R L I +       +++REVF LQRDLLQEK KVKALSEELENPMNVHRWRKLEGSDP T+EMIQKI TLQKRLI+KTE+V
Sbjct:   59 GESQYRERLQDVRVLKLKIGDMKRQLQITKHEGGNFGDMKREVFNLQRDLLQEKTKVKALSEELENPMNVHRWRKLEGSDPATYEMIQKIQTLQKRLIAKTEQV 162

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BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.
Match: Flagellar (associated protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=A0A225X4F6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 7.950e-40
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = 1

Query:    1 SKGEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQMDELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEEV 318
            SKGEA Y  RL DIR LKLK  DL R+L IA+    Q DEL+REV+ LQR+LLQEK KVKALSEELENPMNVHRWRKLEGSDP T+E++QKI TLQKRLI KTEEV
Sbjct:  656 SKGEAQYQERLQDIRVLKLKVTDLKRELYIAKHQVGQADELKREVYHLQRELLQEKTKVKALSEELENPMNVHRWRKLEGSDPATYELLQKIQTLQKRLIQKTEEV 761

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BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHY7_PYTOL)

HSP 1 Score: 150 bits (378), Expect = 7.990e-40
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = 1

Query:    1 SKGEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQMDELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEEV 318
            SKGEA Y  RL DIR LKLK  DL R+L IA+    Q DEL+REV+ LQR+LLQEK KVKALSEELENPMNVHRWRKLEGSDP T+E++QKI TLQKRLI KTEEV
Sbjct:  656 SKGEAQYQERLQDIRVLKLKITDLKRELYIAKHQVGQSDELKREVYHLQRELLQEKTKVKALSEELENPMNVHRWRKLEGSDPATYELLQKIQTLQKRLIQKTEEV 761

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BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.
Match: CFAP58 (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BU08_9DINO)

HSP 1 Score: 144 bits (363), Expect = 8.000e-40
Identity = 76/105 (72.38%), Postives = 85/105 (80.95%), Query Frame = 1

Query:    4 KGEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQMDELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEEV 318
            KGEA Y  RL DIR LKLK  DL R L I    + Q+ +L+REV +LQ++LL+EK KVKALSEELENPMNVHRWRKLEGSDP TFEMIQKI TLQKRLI+KTEEV
Sbjct:  218 KGEAQYQQRLDDIRMLKLKIADLRRSLQIVTSQAGQLSDLKREVRRLQKELLEEKTKVKALSEELENPMNVHRWRKLEGSDPATFEMIQKIQTLQKRLIAKTEEV 322

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BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A3R7I279_9STRA)

HSP 1 Score: 150 bits (378), Expect = 8.270e-40
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = 1

Query:    1 SKGEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQMDELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEEV 318
            SKGEA Y  RL DIR LKLK  DL R+L IA+    Q DEL+REV+ LQR+LLQEK KVKALSEELENPMNVHRWRKLEGSDP T+E++QKI TLQKRLI KTEEV
Sbjct:  993 SKGEAQYQERLQDIRVLKLKVTDLKRELYIAKHQVGQADELKREVYHLQRELLQEKTKVKALSEELENPMNVHRWRKLEGSDPATYELLQKIQTLQKRLIQKTEEV 1098

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BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.
Match: Lipase_3 (domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DQ27_PHYNI)

HSP 1 Score: 150 bits (378), Expect = 8.280e-40
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = 1

Query:    1 SKGEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQMDELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEEV 318
            SKGEA Y  RL DIR LKLK  DL R+L IA+    Q DEL+REV+ LQR+LLQEK KVKALSEELENPMNVHRWRKLEGSDP T+E++QKI TLQKRLI KTEEV
Sbjct:  657 SKGEAQYQERLQDIRVLKLKVTDLKRELYIAKHQVGQADELKREVYHLQRELLQEKTKVKALSEELENPMNVHRWRKLEGSDPATYELLQKIQTLQKRLIQKTEEV 762

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WKI4_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.450e-39
Identity = 77/106 (72.64%), Postives = 87/106 (82.08%), Query Frame = 1

Query:    1 SKGEAGYSMRLMDIRTLKLKCGDLMRDLAIARGSSNQMDELRREVFQLQRDLLQEKAKVKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEEV 318
            SKGE  Y  R+ DIR LKLK  D+ R+L IA+    Q+D+L+REV+ LQR+LLQEK KVKALSEELENPMNVHRWRKLEGSDP T+EMIQKI TLQKRLI KTEEV
Sbjct:  428 SKGETQYQERMADIRVLKLKITDMKRELHIAKHQVGQLDDLKREVYHLQRELLQEKTKVKALSEELENPMNVHRWRKLEGSDPATYEMIQKIQTLQKRLIQKTEEV 533

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9436.17474.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Flagellar	2.260e-57	99.04	associated protein n=1 Tax=Ectocarpus siliculosus ...	[more]
Hypothetical	1.800e-46	79.05	protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re...	[more]
Flagellar	8.570e-41	70.75	associated protein n=1 Tax=Tribonema minus TaxID=3...	[more]
Hypothetical	6.050e-40	70.19	protein n=1 Tax=labyrinthulid quahog parasite QPX ...	[more]
Flagellar	7.950e-40	74.53	associated protein n=23 Tax=Peronosporaceae TaxID=...	[more]
Uncharacterized	7.990e-40	74.53	protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep...	[more]
CFAP58	8.000e-40	72.38	protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 ...	[more]
Uncharacterized	8.270e-40	74.53	protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A3...	[more]
Lipase_3	8.280e-40	74.53	domain-containing protein n=1 Tax=Phytophthora nic...	[more]
Uncharacterized	1.450e-39	72.64	protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9436	contig	E_fasciculatus_S2_contig9436:470..1325 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	186.4
Seed ortholog evalue	6.5e-45
Seed eggNOG ortholog	2880.D7FKG1
Preferred name	FAP189
Model size	327
Hectar predicted targeting category	other localisation
GOs	GO:0001539,GO:0006928,GO:0008150,GO:0009987,GO:0040011,GO:0048870,GO:0051179,GO:0051674,GO:0060285
Exons	2
EggNOG OGs	28HHA@1,2QPV7@2759
Cds size	303
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842592.1157446-CDS-E_fasciculatus_S2_contig9436:469..634	1696842592.1157446-CDS-E_fasciculatus_S2_contig9436:469..634	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9436 470..634 -
1696842592.1286993-CDS-E_fasciculatus_S2_contig9436:1163..1301	1696842592.1286993-CDS-E_fasciculatus_S2_contig9436:1163..1301	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9436 1164..1301 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842592.1388972-UTR-E_fasciculatus_S2_contig9436:1301..1325	1696842592.1388972-UTR-E_fasciculatus_S2_contig9436:1301..1325	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig9436 1302..1325 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9436.17474.1	prot_E_fasciculatus_S2_contig9436.17474.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9436 470..1301 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9436:470..1325-
coding sequence from alignment at E_fasciculatus_S2_contig9436:470..1325-

protein sequence of mRNA_E_fasciculatus_S2_contig9436.17474.1

>prot_E_fasciculatus_S2_contig9436.17474.1 ID=prot_E_fasciculatus_S2_contig9436.17474.1|Name=mRNA_E_fasciculatus_S2_contig9436.17474.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=101bp
MRLMDIRTLKLKCGDLMRDLAIARGSSNQMDELRREVFQLQRDLLQEKAK
VKALSEELENPMNVHRWRKLEGSDPTTFEMIQKIHTLQKRLISKTEEVTA
*

mRNA from alignment at E_fasciculatus_S2_contig9436:470..1325-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9436.17474.1 ID=mRNA_E_fasciculatus_S2_contig9436.17474.1|Name=mRNA_E_fasciculatus_S2_contig9436.17474.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=856bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9436:470..1325- (Ectocarpus fasciculatus EfasUO2)
TCAAAGGGCGAGGCGGGCTACAGCATGCGCTTGATGGATATTCGCACTCT
AAAGCTCAAGTGCGGGGACCTGATGCGCGACCTTGCCATAGCTCGCGGCT
CGAGCAACCAGATGGACGAGTTGCGTAGGGAGGTCTTTCAGCTGCAGAGG
GATCTATTGCAGGTACTGCTACCTTACCAACCCGCCGTTACGAATGCATG
TGCCGCGACGAATTTCATACATGGTTTCATGTTCGGTCGTCTCCGTGCGA
ACAAAAGAGACGGAATATAATTCTTTGCCGCACCCCCTCCCCCTCCGCCT
GCCTCTCCCCGGGAAGTCCATCGCCGAACGGCTAAGGCATGCATGGGCAC
GAGTACCCACACACACACACACAAGGAACGATTGGCCATCGGTGATCGAT
CCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTA
ACCGCTAAGGCATGCAAAACATAAGAGTACGCCCCCCCCCCCACACACAC
ACACCACACAACAACCTCGTCGGTCAAGTTCCGATGGGAGGGCCTTTGGG
ATGTATGGCAGGCAGTGAGTAGAACCCCCCCCGCCCCCCTCTTCGCCGCC
GCCGGCGAGCCTTCCGCTGAGGGCAAGGGGGGGCCTTCATCATCTACAAC
ATGAAACCCGGAGCACCACAAACATTTCACACGACTCGCAGGAGAAAGCC
AAGGTAAAGGCATTGAGCGAGGAGCTGGAGAACCCCATGAACGTGCACCG
CTGGCGGAAGCTAGAGGGGAGCGACCCGACAACGTTCGAGATGATCCAAA
AGATTCACACGCTGCAGAAACGCCTCATCTCCAAGACGGAAGAGGTAACC
GCGTGA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9436:470..1325-

>mRNA_E_fasciculatus_S2_contig9436.17474.1 ID=mRNA_E_fasciculatus_S2_contig9436.17474.1|Name=mRNA_E_fasciculatus_S2_contig9436.17474.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=303bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9436:470..1325- (Ectocarpus fasciculatus EfasUO2)
ATGCGCTTGATGGATATTCGCACTCTAAAGCTCAAGTGCGGGGACCTGAT
GCGCGACCTTGCCATAGCTCGCGGCTCGAGCAACCAGATGGACGAGTTGC
GTAGGGAGGTCTTTCAGCTGCAGAGGGATCTATTGCAGGAGAAAGCCAAG
GTAAAGGCATTGAGCGAGGAGCTGGAGAACCCCATGAACGTGCACCGCTG
GCGGAAGCTAGAGGGGAGCGACCCGACAACGTTCGAGATGATCCAAAAGA
TTCACACGCTGCAGAAACGCCTCATCTCCAAGACGGAAGAGGTAACCGCG
TGA