mRNA_E_fasciculatus_S2_contig9320.17381.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9320.17381.1
Unique NamemRNA_E_fasciculatus_S2_contig9320.17381.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9320.17381.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU40_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.530e-18
Identity = 109/398 (27.39%), Postives = 164/398 (41.21%), Query Frame = 2
Query:   56 LTVMNSAATGNRAAMINTLIGLGIDVHGSRDGPIPLESAIESHSPDALSALVAHGADVNKANAVDLTPLQVAVPWAHIGRG---------------ILKALLAAGANPDVGGNGASVLLEALGSFDFRKIATVLLAGGANINA-------------CGLNGVTALIEAAAM-DEADDIDFLVQKGADMDLSTFEDERTALHVACS-RMCARAVTSLLRHGADVNVDDGTGNTPLHLAAMAGGSSPRQALSIVDCLXXXXXXXXXXNDDGRTPCERVRRELTASKYTKTVLGVLARAPRDRTWRRRAPWVLCRAYADKPRPQPQVRAVKPRLFLWRDILDCASDDSSGDEAAQDAPADVHGNDNDASEXXXXXXIDFSEVAARVAELDEGTFRAVISYL 1159
            LT ++ AA G +   +  L+G G D +G      P+  A E++SP+A+ ALV HGAD +  +++   PL  A    ++                  +   LL A            VL  +  S D  +    LL  GA++N              CG N V  L++A A+ D  +D   LV                 LH AC+  +    V  LL HGA+VN+ D  G + LHL A+      R +  +VD L          N D  TP +  R +    + ++ VL +L  AP DR WRRR   +LC          PQ + + P     +     A D ++      +  +D H N N +S        DFS + AR+ +  +G FR ++ YL
Sbjct:   81 LTALHHAAAGTKLDAMEFLVGSGADANGGALKWRPIHFATEANSPEAVLALVRHGADPHAEDSLGRPPLCCAADRGNMXXXXXXXXXXXXXXXXHEVCPPLLFA------------VLSRSNNSEDMTR---ALLQHGADVNELDDYEIAINEAVRCG-NVVKLLLKAGALVDGHNDFHGLVL--------------APLHAACNFSLSCDVVKVLLGHGANVNLQDSEGTSALHLTAV------RFSSRLVDLLLRHGADETINNGDSSTPADCARLKAGHQEASRPVLRLLGGAPADRAWRRRGRVLLCST-------PPQQKRLGPGETRTKMTRVTAGDGAAARGGTSEVGSDAHSNSNGSS--------DFSSLMARLFDRPQGVFRKIVCYL 427          
BLAST of mRNA_E_fasciculatus_S2_contig9320.17381.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ8_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 3.150e-16
Identity = 87/278 (31.29%), Postives = 124/278 (44.60%), Query Frame = 2
Query:    2 LRALVRHGADLKACSENGLTVMNSAATGNRAAMINTLIGLGIDVHGSRDGPIPLESAIESHSPDALSALVAHGADVNKANAVDLTPLQVAVPWAHIGRGILKALLAAGANPDVGGNGASVLLEALGS----FDFRKIATVLLAGGANINACGLNGVTALIEAAAMDEADDIDFLVQKGADMDLSTFEDERTALHVACSRMCARAVTSLLRHGADVNVDDGTGNTPLHLAAMA-GGSSPRQALSIVDCLXXXXXXXXXXNDDGRTPCERVRRELTASKY 820
            +  L++HGAD    S   LT ++ AA GN A  I+ LI  G  + G      P+                 HGAD++       TPL  AV W ++    +KALLAAGANP++ GN  +VL  ++ S     D+  +   LL  GA +NA   +  T L  AA  D    +  LV+ GA +   +  + RT LH ACS      V +LL HG  +N  D        +A  A  G +    L +++ L          N D  TP   V + L+ S+Y
Sbjct:  290 METLLKHGADPSTRSWRNLTALHKAAEGNEAEAIDVLIKAGAVISGPAGFDSPVXXXXXXXXXXXXXXXXRHGADLDWHEEAGTTPLFRAVQWRYLEA--VKALLAAGANPNISGNSETVLFASISSEISEIDWGVL-LALLESGAKVNAANDDSDTPLHAAAKCDPWA-VHALVRLGAKVVPDS--NGRTPLHAACSFHNLETVAALLTHGPAINALDQXXXXXXXMAVGAEAGDNGGSKLELLEMLVAAGADQLAKNKDDDTP---VSKALSLSRY 558          
BLAST of mRNA_E_fasciculatus_S2_contig9320.17381.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.640e-11
Identity = 90/328 (27.44%), Postives = 141/328 (42.99%), Query Frame = 2
Query:   44 SENGLTVMNSAATGNRAAMINTLIGLGIDVH--GSRDGPIPLESAIESHSPDALSALVAHGADVN---KANAVDLTPLQVAVPWA------------------HIGRGILKALLAAGANPDVGGNGASVLLEALGSFDFRKIATVLLAGGANINACGLNGVTALIEAAAMDEADDIDFLVQKGADMDLS-TFEDERTALHVACSRMCARAVTSLLRHGADVNVDDGTGNTPLHLAAMAGGSSPRQALSIVDCLXXXXXXXXXXNDDGRTPCE---RVRRELTASK--------YTKTVLGVLARAPRDRTWRRRAPWVLCRAYADKPR 922
            S  G + +  +  G   A    LI  G DV+     D   PL +A+++   D +  L+  GA+ N   + +    TPL  A                      H+    +K LLAAGA+ D+    +   L     ++   +   LL  G ++N  G +    L  AA  +    I  L+  GAD+D+  +F D RT+LH A       A+ +LLR GA+V+     G+T LHL +   G +P      VD L          + +G+ P +   RV+R   +++          +  + +LARAP DRTWRRR   ++ R   +K R
Sbjct:  100 SSTGRSALYQSVLGKHEAAARKLILAGADVNFVDRADKAGPLFAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTDKNGHVAT--VKVLLAAGADTDIRDLDSHSALVFAAQYERIDVMKALLEHGVDVNV-GEDHWNPLHWAAQFNSTGCITVLLDAGADIDVKCSFLDGRTSLHFAAETGNNEALLALLRRGANVHQTTDDGSTALHLVSEMEGHAPDDT---VDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPELERAIELLARAPADRTWRRRCWLIMLRERTNKER 421          
BLAST of mRNA_E_fasciculatus_S2_contig9320.17381.1 vs.
Match: SMI1_KNR4 (domain-containing protein n=1 Tax=Cystobacter ferrugineus TaxID=83449 RepID=A0A1L9B0C4_9DELT)

HSP 1 Score: 77.4 bits (189), Expect = 3.020e-11
Identity = 78/239 (32.64%), Postives = 120/239 (50.21%), Query Frame = 2
Query:   14 VRHGADLKACSENGLTVMNSAATGNRAAMINTLIGLGIDVHG-SRDGPIPLESAIESHSPDALSA---LVAHGADVN-----KANAVDLTPLQVAVPWAHIGRGILKALLAAGANPD-VGGNGASVLLEALGSFDFRKIATVLLAGGANINACGLNGVTALIEAAAMDEADDIDFLVQKGADMDLSTFEDE-RTALHVACS------RMCARAVTSLLRHGADVNVDDGTGNTPLHLAA 679
            ++ GA+  A ++ G T ++SAA    A ++  L+  G DV+G + D  I L  A      +A++    L+A G++VN     +A +  LT L            IL+ LL AGA+P+   G   + L+ A G     ++A +LL  GA +NA G  G+TAL+ A     A  ++ L+ KGAD+  +T + E  T L +A +         A  +  LLR GA+ N  +  G TPLH AA
Sbjct:   30 LKAGANPNARNQEGHTALHSAAANASAEIVELLLEAGADVNGPASDSAIALCFATAHTGDNAVAMVKQLIARGSNVNHQWEDEARSTVLTDLLNQENNEEPSAEILRTLLHAGADPNRPNGQNETPLMLAAGYKQQPELAELLLEHGAQVNAVGRWGMTALMHAIQCGNAPLVERLIAKGADIHQATEDTEGNTPLTLALNLDELHGEPSADVLGVLLRAGANPNTPNARGWTPLHFAA 268          
BLAST of mRNA_E_fasciculatus_S2_contig9320.17381.1 vs.
Match: E3 (ubiquitin-protein ligase MIB1-like isoform X1 n=3 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D72E99F)

HSP 1 Score: 73.2 bits (178), Expect = 1.050e-9
Identity = 73/234 (31.20%), Postives = 109/234 (46.58%), Query Frame = 2
Query:    2 LRALVRHGADLKAC--SENGLTVMNSAATGNRAAMINTLIGLGIDV-HGSRDGPIPLESAIESHSPDALSALVAHGADVNKANAVDLTPLQVAVPWAHIGRGILKALLAAGANPDVG-----GNGASVLLEALGSFDFRKIATVLLAGGANINACGLNGVTALIEAAAMDEADDIDFLV-QKGADMDLSTFEDERTALHVACSRMCARAVTSLLRHGADVNVDDGTGNTPLHLA 676
            +R L+  GAD+  C   ++  T M++A  G    ++  L+ LG +  H    G   +  AI+     A+ AL  HGADVN+ +    TP+ +A+        I++ALL+    P+V       N  + L  A    + R +  +L    + +N       T L  AA  D  + +  LV   GAD+++       TALH AC         +LL  GADVNV D  G+TPLHLA
Sbjct:  536 VRVLLELGADVSRCVSDDSDKTPMSAALEGKNEDLVELLLELGANKEHWYSPGVTAIHLAIKYSLVGAVLALAKHGADVNRKHLGGKTPIHMAIELKKTD--IVEALLSL---PEVDIEIEDDNSFNALQLACLRDNPRAVELILKRDKSGVNKRRKGDSTPLHIAAYNDHVECVRLLVINGGADVNMRNKRKNGTALHNACLTGKFATAEALLELGADVNVVDADGDTPLHLA 764          
BLAST of mRNA_E_fasciculatus_S2_contig9320.17381.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.810e-9
Identity = 95/346 (27.46%), Postives = 145/346 (41.91%), Query Frame = 2
Query:    5 RALVRHGADLKACSENGLTVMNSAATGNRAAMINTLIGLGIDVHGSR--DGPIPLESAIESHSPDALSALVAHG-ADVNKANAVDLTPLQVAVPWAHIGRGILKALLAAGANPDVGGNGASVL----LEALGSFDFRKIATVLLAGGANINACGLNGVTALIEAAAMDEADDIDFLVQKGADMDLSTFEDER--TALHVACSRMCARAVTSLLRHGADVNVDDGTGNTPLHLAAMAGGSSPRQALSIVDCLXXXXXXXXXXNDDGRTPCERVRRELTASKY-----------TKTVLG-----------------VLARAPRDRTWRRRAPWVLCRAYADKPRPQP 931
            + L+  GAD+         V    A   R   +  L+ +G     SR   G  PL  A  S +   +S L+ +   DV+  ++  ++PL VA    H     ++ALL AGA+ ++   G + L    ++   S     +   ++  G N+ A    G+TAL  A     A  +D L+  GAD++          T L V        AV +LL+ G +VN  +  G + LHL     GS  R    +VD L          N +G TP + ++  +T ++Y           T+ V G                 +LARAP DRTWRRR   V+ RA A++ R  P
Sbjct:  122 KKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCST--VEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHARG---AQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTC---GSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILK--VTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRARAERGRGAP 457          
BLAST of mRNA_E_fasciculatus_S2_contig9320.17381.1 vs.
Match: Uncharacterized (protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JL08_BIOGL)

HSP 1 Score: 64.3 bits (155), Expect = 6.010e-7
Identity = 65/203 (32.02%), Postives = 99/203 (48.77%), Query Frame = 2
Query:   71 SAATGNRAAMINTLIGLGIDVHGSRDGPIPLESAIESHSPDALSALVAHGADVN-KANAVDLTPLQVAVPWAHIGRGILKALLAAGANPDVGGNGASVLLEALGSFDFRKIATVLLAGGANINACGLNGVTALIEAAAMDEADDI-DFLVQKGADMD-LSTFEDERTALHVACSRMCARAVTSLLRHGADVNVDDGTGNTPLH 670
            S A G+  ++I  L+  G D+HG  D   PL +A++    D +  L+ +GADVN K N   L    +    +   + +  +L  A +N        ++L              VLL  GA +N    +G TALI +   D ++ I  F + KG  ++ + T  +  TALH A +    RA+T LL+HGA+VNV D  G +PLH
Sbjct:  426 SVAVGD-VSLIEALLASGADIHGITDQKTPLMNAVDI---DVIKYLLDNGADVNFKTNTTTL----IHTLTSSYRQSLESSLQVAESNTSSEQQHINIL-------------NVLLDNGALLNDINDDGQTALINSVTRDCSEKIIKFFLNKGCKINQVDTLGN--TALHEAANSGNIRALTVLLKHGANVNVQDTIGCSPLH 605          
BLAST of mRNA_E_fasciculatus_S2_contig9320.17381.1 vs.
Match: Ankyrin (repeat n=1 Tax=Abditibacterium utsteinense TaxID=1960156 RepID=A0A2S8SUK8_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 8.940e-7
Identity = 75/228 (32.89%), Postives = 111/228 (48.68%), Query Frame = 2
Query:   11 LVRHGADLKACSENGLTVMNSAATGNRAAMINTLIGLGIDVHGSRDGPIPLESAIESHSPDALSALVAHGADVNKANAVDLTPLQVAVP-WAHIGRGILKALLAAGANPD-VGGNGASVLLEAL---GSFDFRKIATVLLAGGANINACGLNGVTALIEAAAMDEADDIDFLVQKGADMDLSTFEDERTALHVACSRMCARAVTSLLRHGADVNVDDGTGNTPLHLAA 679
            L ++ A L A +E+   +  S   G+ AA+   + G    +  +  G  PL  AI+S   D ++ L+  GAD N       + L  AV  W    + I +ALLA GA  D V   G + LL  L   G    +   + LLA GA++ A   +G   +I+ A ++   D+   + + AD+  +  E+  T L  A SR  A  V  LL  GADVNV + +G+T LHLAA
Sbjct:   22 LAQNTATLAARAES---LSESIRKGDLAAVKTAIEGEPKLIESTSRGNNPLYVAIQSGKADVVNYLLEKGADPN-VETYSGSALAAAVSGWGDNWKTIAEALLAKGAKIDGVDEEGQTPLLRMLNYGGGSAQKDRVSWLLANGADLYARSRDGRN-VIQMAIVNSQPDVVTAILEKADVKKAD-ENGNTPLFAAASRGNAEYVRLLLGRGADVNVQNASGDTVLHLAA 243          
BLAST of mRNA_E_fasciculatus_S2_contig9320.17381.1 vs.
Match: ankyrin-1-like (n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C9C2A1)

HSP 1 Score: 63.2 bits (152), Expect = 1.310e-6
Identity = 73/262 (27.86%), Postives = 108/262 (41.22%), Query Frame = 2
Query:   11 LVRHGADLKACSENGLTVMNSAATGNRAAMINTLI------GLGIDVHG-SRDGPIPLESAIESHSPDALSALVAHGADVNKANAVDLTPLQVAVPWAHIGRGILKALLAAGANPDV-------GGNGASVLLEALGSFDFRKIATVLLAGGANINACGLNGVTALIEAAAMDEADDIDFLV-------QKGADMDLSTFEDERTALHVACSRMCARAVTSLLRHGADVNVDDGTGNTPLHLAAM---AGGSSPRQALSIVD 724
            L+R GAD       G T ++         MI  L+      G+ + V    + G  PL +A+ +        L+ +GA+ N ANA   TPL            + + ++   A   V         +G + L  AL S   R +A +LL+ GAN N     G+TAL +     +  ++  +V        K  ++D  T +  RT LH A  R        +LRHGAD N+ DG G TPLH        GG+       +VD
Sbjct:  283 LLRKGADPNMADNEGSTALHIICMRRDDGMIEMLLKICAELGVTLQVDARDKSGDTPLHAALSNGRVQTSELLLRNGANPNAANAKGSTPLHSICKHPEDSHILARRVIDVCAELRVTLRVNAQDASGDTALHVALSS-GCRNLARLLLSNGANPNLANDGGLTALHDICLKADDQELAEMVFELSHERYKPIEVDART-KCGRTPLHCAMMRGHGIVGQFVLRHGADPNLADGDGQTPLHYICQREDGGGNLAEMFFEVVD 542          
BLAST of mRNA_E_fasciculatus_S2_contig9320.17381.1 vs.
Match: Uncharacterized (protein n=4 Tax=Brachypodium distachyon TaxID=15368 RepID=I1I9S2_BRADI)

HSP 1 Score: 61.6 bits (148), Expect = 2.030e-6
Identity = 72/216 (33.33%), Postives = 99/216 (45.83%), Query Frame = 2
Query:   44 SENGLTVMNSAATGNRAAMINTLI-GLGIDVHG-SRDGPIPLESAIESHSPDALSALVAHGADVNKANAVDLTPLQVAVPWAHIGR-GILKALLAAGANPDVGGNGASVLLEAL-GSFDFRKIATVLLAGGANINACGLNGVTALIEAAAMDEADDIDFLVQKGADMDLSTFEDERTALHVACSRMCARAVTSLLRHGADVNVDDGTGNTPLHLAA 679
            S  G+ V++ AA G    M   L+  L +DV      G  PL  AI   + D +  L+ H AD  K N   LTPL VA   A IG+  I++ LL+ GA+ D    G + L  A  G  D   +  +LL   A+ N       T L+ A        +  L++ GAD++   FE   T L VA        +  L+  GAD NV D  G TP+ +AA
Sbjct:   78 SSFGIGVLHFAALGRSLPMCRYLVEDLRMDVDDICPAGETPLTFAIGFENVDVVRYLLNHDADTEKLNEDGLTPLYVA---AAIGQCEIVEVLLSKGAHIDALSTGETALHAAAHGRHD--NVVKILLDHCADHNKINFGDCTPLVCAIDARSLKCVKLLLEAGADVNCVGFE---TPLIVAAGIGLTDILKCLVLAGADPNVHDSFGRTPVEIAA 285          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9320.17381.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
Uncharacterized1.530e-1827.39protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin3.150e-1631.29repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized1.640e-1127.44protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
SMI1_KNR43.020e-1132.64domain-containing protein n=1 Tax=Cystobacter ferr... [more]
E31.050e-931.20ubiquitin-protein ligase MIB1-like isoform X1 n=3 ... [more]
Uncharacterized3.810e-927.46protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.010e-732.02protein n=1 Tax=Biomphalaria glabrata TaxID=6526 R... [more]
Ankyrin8.940e-732.89repeat n=1 Tax=Abditibacterium utsteinense TaxID=1... [more]
ankyrin-1-like1.310e-627.86n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UP... [more]
Uncharacterized2.030e-633.33protein n=4 Tax=Brachypodium distachyon TaxID=1536... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9320contigE_fasciculatus_S2_contig9320:882..3768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score90.5
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog2880.D7G6X8
Model size1888
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size1098
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842582.3800468-UTR-E_fasciculatus_S2_contig9320:881..9451696842582.3800468-UTR-E_fasciculatus_S2_contig9320:881..945Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9320 882..945 +
1696842582.4027267-UTR-E_fasciculatus_S2_contig9320:2043..20541696842582.4027267-UTR-E_fasciculatus_S2_contig9320:2043..2054Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9320 2044..2054 +
1696842582.4136167-UTR-E_fasciculatus_S2_contig9320:3053..37681696842582.4136167-UTR-E_fasciculatus_S2_contig9320:3053..3768Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9320 3054..3768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842582.3924859-CDS-E_fasciculatus_S2_contig9320:945..20431696842582.3924859-CDS-E_fasciculatus_S2_contig9320:945..2043Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9320 946..2043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9320.17381.1prot_E_fasciculatus_S2_contig9320.17381.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9320 946..2043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9320.17381.1

>prot_E_fasciculatus_S2_contig9320.17381.1 ID=prot_E_fasciculatus_S2_contig9320.17381.1|Name=mRNA_E_fasciculatus_S2_contig9320.17381.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=366bp
MNSAATGNRAAMINTLIGLGIDVHGSRDGPIPLESAIESHSPDALSALVA
HGADVNKANAVDLTPLQVAVPWAHIGRGILKALLAAGANPDVGGNGASVL
LEALGSFDFRKIATVLLAGGANINACGLNGVTALIEAAAMDEADDIDFLV
QKGADMDLSTFEDERTALHVACSRMCARAVTSLLRHGADVNVDDGTGNTP
LHLAAMAGGSSPRQALSIVDCLLRAGADETIVNDDGRTPCERVRRELTAS
KYTKTVLGVLARAPRDRTWRRRAPWVLCRAYADKPRPQPQVRAVKPRLFL
WRDILDCASDDSSGDEAAQDAPADVHGNDNDASEQEAPADIDFSEVAARV
AELDEGTFRAVISYL*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9320:882..3768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9320.17381.1 ID=mRNA_E_fasciculatus_S2_contig9320.17381.1|Name=mRNA_E_fasciculatus_S2_contig9320.17381.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2887bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9320:882..3768+ (Ectocarpus fasciculatus EfasUO2)
CTTGCGAGCTCTTGTTCGGCACGGAGCGGACTTGAAAGCCTGTAGTGAAA ACGGCTTGACGGTCATGAACAGCGCCGCGACAGGCAATAGGGCAGCCATG ATCAATACCCTCATCGGGCTCGGCATCGACGTCCACGGGTCGCGCGATGG GCCCATTCCTCTCGAAAGTGCCATCGAATCACACTCCCCCGACGCCTTGA GCGCTCTCGTGGCGCACGGTGCGGACGTCAACAAGGCGAATGCAGTCGAC CTGACGCCGCTGCAAGTCGCAGTGCCTTGGGCCCACATTGGACGCGGCAT ATTGAAGGCCCTGCTAGCAGCGGGGGCGAACCCAGACGTGGGAGGGAACG GGGCCTCTGTGTTGCTTGAAGCTCTTGGCAGTTTTGATTTTCGGAAGATT GCGACCGTACTATTGGCGGGTGGCGCGAACATCAACGCCTGCGGCCTCAA CGGAGTAACAGCTCTAATCGAGGCTGCTGCAATGGACGAAGCCGACGACA TCGACTTCTTGGTCCAAAAGGGTGCAGACATGGATTTGTCAACTTTCGAA GATGAACGCACGGCGCTCCACGTCGCCTGCTCCAGGATGTGCGCCCGCGC CGTGACCTCCCTGTTGAGGCATGGGGCGGACGTCAACGTGGACGACGGGA CCGGCAACACACCCCTGCACCTGGCTGCGATGGCGGGAGGCTCGTCGCCG AGGCAGGCCCTTTCCATCGTCGACTGTTTGTTGAGAGCGGGTGCTGATGA GACAATCGTCAATGACGACGGCCGCACGCCCTGCGAACGGGTCCGGCGCG AGCTTACCGCTTCCAAGTACACCAAGACCGTGCTGGGGGTGCTGGCCCGC GCGCCGCGGGACAGGACATGGCGTCGCCGCGCGCCCTGGGTCCTGTGCCG TGCCTACGCGGACAAGCCCCGCCCACAGCCACAGGTACGAGCGGTCAAGC CCCGCCTGTTTCTGTGGCGCGACATACTGGATTGTGCTTCTGACGATAGC AGCGGCGACGAGGCTGCTCAAGACGCGCCGGCAGACGTCCATGGTAACGA CAACGACGCTTCCGAACAGGAGGCGCCAGCAGACATCGACTTCAGCGAGG TAGCGGCAAGGGTTGCGGAGCTTGACGAAGGAACCTTCCGCGCGGTCATC TCCTACCTGTAGTCTAACAGCTGGTAAGTGTGGAGAGGCAACCGTGGAGG TAGAGTTCCATGAGAGCGTGGCGCGCGCACGTTCATCCCCCCGTGGTGTC CGTCCAAGGACTCCTGTAGTTGAGACAACCCCGAGGGTCTTTCGAAAGCT AGGAAAAATATCGTCACTCTACGCACGCAGGTAGGTGTCAGTAAGGCGAT TGTCCACGACGATCTGACAATCAGAATCAAGAGTTGGTCTAGTCAAATGT ACCCTGCGAAGATTAAGATTTGTGCCGTTTCCCCTGAAGAAACTATTTCG AGCCATCTTAACACGAAAGAAGAGTTGGTATCGCCCATGAAACCTGTGTC CTTCGAATATCTTTTTTTTAGAACCGGGTTGCGCCATTGTACTTGTACAC TTGAGTGGTCGCGGTCGCGGTCGCGGTTTTCGCACCGAAAAGGGCGAGGT GGCTTTCGAGCGGTTTCCCATAGACGGTGGAGGTATTCCCTTTGGAACCC TGGCACAGCTTTGGGGCCGAGGGATGCCGAGTGTGTCCTAGAAATGCGAC AGCAACATTGCGACAGCACCATATGGTAACACTCTTAGCTTCAGATTTTG GTGGACAATAGGTTCTTATTTTCCCGCATGCTCAGGTCTTCGGATTTAGG AAAAAGTTCGAGGTGAGGGGCAGACACTACTGTAGATTTTTCCGGCTTTT TTGTTGTGGTATTGACGATATAAAAAGCGGGGTGTCGAGCACTTGTTTTC CTGCTAGAGGGGAGCGAGCTGGTGAGTCGCCAACTGCGCCCCCCGAGAGT TCGAACCTCGGCTAAGGGGAGGCAAAGTGTTTGGTTTTCCCTCATGCGGC GAACTATAGTGCTCTCTCTACCGCATGCAGTATAGAACATCAATATTTTT GCTGAAGGGTCGTTGGTACTTGGTTGGAATGCCGCACACAAATAAATGCA TTTTAGCAACTTATTTAGTCGCTGTTGCATGTGATGCCCTGGTGTTGTCG TGTGCTCTCCTCGATCCGACAGACAGGTAGCAACACGCTTTCGACGGAAT ACGGTGCGGGCAGCGAACCCCTCACTGGCGCACACCAGCGTTTTGTGTTG TATCAAGGCTGGTTGTTGGCCAACACCACCACTCTCTAGTGTGGTTCGCT CGCACGCGGTTCCCTTGAACTACTGCTGTTGTACGTGCATGTGCGTGCTA TTGCAGTCTCGATGTACTGGAATGTGCTCCAGATACCATTTTTGGCAGTC ATCTTGTTTTGGCATGGACCTTTTCCTTTTTTATCCTCGATGGACGGGTC TTGGGGTGGTCGGAGCCCTCGGTACTTGTACTCGGTCGGACACTGATGAT TCCGTGGAAAGACTCGTTTGTTTATCTCCTTTGTATTAGTCGCCGATTTG GTTAAAAAGTAGAGACCATTCACAGGGAGAGCACGAGACCGAGGTGCTGG TACTCTGCTCACTAGTGTCGAGAATTCAGAATGCTTTCGTATGTATGTTT TGTAAAGAAACGATTAAGCACACGACGCAAGCTGCGGGGTGACATCTCGC CTGGGAGTAGGTACCCTCTCGATCTGGACACTCGGAGAGCTAACCCTTCG ACGAGGCACAATATAACCCAACCCCGCGCCTCGTGATTTGGTGTCTTATT CTCGACGCGATGAGCGTCTTTGTTCGCTGTTTTGCGAGGAGGGCGGAAGT ATCACCGCCCGACTTGCACAGCAACGAAAAGGTGGAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9320:882..3768+

>mRNA_E_fasciculatus_S2_contig9320.17381.1 ID=mRNA_E_fasciculatus_S2_contig9320.17381.1|Name=mRNA_E_fasciculatus_S2_contig9320.17381.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1098bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9320:882..3768+ (Ectocarpus fasciculatus EfasUO2)
ATGAACAGCGCCGCGACAGGCAATAGGGCAGCCATGATCAATACCCTCAT
CGGGCTCGGCATCGACGTCCACGGGTCGCGCGATGGGCCCATTCCTCTCG
AAAGTGCCATCGAATCACACTCCCCCGACGCCTTGAGCGCTCTCGTGGCG
CACGGTGCGGACGTCAACAAGGCGAATGCAGTCGACCTGACGCCGCTGCA
AGTCGCAGTGCCTTGGGCCCACATTGGACGCGGCATATTGAAGGCCCTGC
TAGCAGCGGGGGCGAACCCAGACGTGGGAGGGAACGGGGCCTCTGTGTTG
CTTGAAGCTCTTGGCAGTTTTGATTTTCGGAAGATTGCGACCGTACTATT
GGCGGGTGGCGCGAACATCAACGCCTGCGGCCTCAACGGAGTAACAGCTC
TAATCGAGGCTGCTGCAATGGACGAAGCCGACGACATCGACTTCTTGGTC
CAAAAGGGTGCAGACATGGATTTGTCAACTTTCGAAGATGAACGCACGGC
GCTCCACGTCGCCTGCTCCAGGATGTGCGCCCGCGCCGTGACCTCCCTGT
TGAGGCATGGGGCGGACGTCAACGTGGACGACGGGACCGGCAACACACCC
CTGCACCTGGCTGCGATGGCGGGAGGCTCGTCGCCGAGGCAGGCCCTTTC
CATCGTCGACTGTTTGTTGAGAGCGGGTGCTGATGAGACAATCGTCAATG
ACGACGGCCGCACGCCCTGCGAACGGGTCCGGCGCGAGCTTACCGCTTCC
AAGTACACCAAGACCGTGCTGGGGGTGCTGGCCCGCGCGCCGCGGGACAG
GACATGGCGTCGCCGCGCGCCCTGGGTCCTGTGCCGTGCCTACGCGGACA
AGCCCCGCCCACAGCCACAGGTACGAGCGGTCAAGCCCCGCCTGTTTCTG
TGGCGCGACATACTGGATTGTGCTTCTGACGATAGCAGCGGCGACGAGGC
TGCTCAAGACGCGCCGGCAGACGTCCATGGTAACGACAACGACGCTTCCG
AACAGGAGGCGCCAGCAGACATCGACTTCAGCGAGGTAGCGGCAAGGGTT
GCGGAGCTTGACGAAGGAACCTTCCGCGCGGTCATCTCCTACCTGTAG
back to top