mRNA_E_fasciculatus_S2_contig9303.17361.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9303.17361.1
Unique NamemRNA_E_fasciculatus_S2_contig9303.17361.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9303.17361.1 vs.
Match: Cycloartenol (synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF9_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.930e-41
Identity = 67/77 (87.01%), Postives = 75/77 (97.40%), Query Frame = 1
Query:    1 TGWKFSCAQESHQRTEDRWADTGLKLTGEAAGRQSWHWCGAEAGDEASVGSAGEAPTFNPSVNPNSGDKIFRAQQVR 231
            TGWKFSCA+ESHQRTEDRWA+TGLKLTGEAAGRQSWHWCG +AGD+AS+G+A +APTFNPSVNPNSGDKIFRAQQ+R
Sbjct:   66 TGWKFSCARESHQRTEDRWAETGLKLTGEAAGRQSWHWCGTDAGDDASLGAADDAPTFNPSVNPNSGDKIFRAQQLR 142          
BLAST of mRNA_E_fasciculatus_S2_contig9303.17361.1 vs.
Match: SQHop_cyclase_N (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY6_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 4.750e-40
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = 1
Query:    1 TGWKFSCAQESHQRTEDRWADTGLKLTGEAAGRQSWHWCGAEAGDEASVGSAGEAPTFNPSVNPNSGDKIFRAQQVR 231
            TGWKF+CA+ESHQRTEDRW +TGLKLTGE AGRQSWHWCG +AGD+A +G+A EAPTFNPSVNPNSGDKIFRAQQ+R
Sbjct:   66 TGWKFACARESHQRTEDRWVETGLKLTGEVAGRQSWHWCGTDAGDDALLGAADEAPTFNPSVNPNSGDKIFRAQQLR 142          
BLAST of mRNA_E_fasciculatus_S2_contig9303.17361.1 vs.
Match: Terpene (cyclase/mutase family member n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JAH8_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 6.830e-9
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    4 GWKFSCAQESHQRTEDRWADTGLKLTGEAAGRQSWHWCGAEAGDEASVGSAGEAPTFNPSVNPNSGDKIFRAQQV 228
            GW    A+ SH++T    +    +LTGEAAGRQ+WH     + D+  VG       FNPS+NPN  D+I+RAQ+V
Sbjct:  124 GWSCEVAEASHKKTHAA-SPYNEELTGEAAGRQTWHHSPVASSDKIPVG-------FNPSINPNPEDEIWRAQRV 190          
BLAST of mRNA_E_fasciculatus_S2_contig9303.17361.1 vs.
Match: Cycloartenol (synthase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JCZ9_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 1.860e-6
Identity = 36/83 (43.37%), Postives = 42/83 (50.60%), Query Frame = 1
Query:    4 GWKFSCAQESHQRTEDRWADTGLKLTGEAAGRQSWHWC-------GAEAGDEASVGSAGEAPTFNPSVNPNSGDKIFRAQQVR 231
            GW+   A+ SH  T       G  LTGEAAGRQ WH         G   G E       E   FNPSVNPN  D+I+RAQ+V+
Sbjct:  173 GWRCEVAEASHMHTHTS-LPIGQTLTGEAAGRQIWHKVQLNPLQRGLSFGAEHK-----EKCGFNPSVNPNPEDEIWRAQRVQ 249          
BLAST of mRNA_E_fasciculatus_S2_contig9303.17361.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JR64_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.710e-6
Identity = 36/85 (42.35%), Postives = 47/85 (55.29%), Query Frame = 1
Query:    7 WKFSCAQESHQRTEDRWADT-GLKLTGEAAGRQSWHW-----CGAEAGDEASVGSAG----EAPTFNPSVNPNSGDKIFRAQQVR 231
            W+ + A+ SH+ T  ++A   G  +TGE +GRQ W       C  +  DEA V        E   F+PS NPNS DKIFRAQQ+R
Sbjct:  202 WRCAVAEASHEVTTLKFAGVKGAGMTGEPSGRQMWTLDEGKSCATQV-DEALVQKLACGGREYDGFDPSKNPNSCDKIFRAQQIR 285          
BLAST of mRNA_E_fasciculatus_S2_contig9303.17361.1 vs.
Match: Cycloartenol (synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZB6_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 6.240e-6
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    4 GWKFSCAQESHQRTEDR---WADTGLKLTGEAAGRQSWHWCGAEAGDEASVGSAGEAPTFNPSVNPNSGDKIFRAQQV 228
            GW F+ A+ S   TE          + LTGEAAGRQ+WHW   +  D A  G   +  +F+ + NPNS DK+FR QQV
Sbjct:   79 GWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGKDLA--GRKADY-SFSAARNPNSADKVFRTQQV 153          
BLAST of mRNA_E_fasciculatus_S2_contig9303.17361.1 vs.
Match: AGC-kinase (C-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0X3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 6.630e-6
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    4 GWKFSCAQESHQRTE-DRWADTG--LKLTGEAAGRQSWHWCGAEAGDEASVGSAGEAPTFNPSVNPNSGDKIFRAQQV 228
            GW F+ A+ S   TE +  A  G  + LTGEAAGRQ+WHW   +  D A  G   +  +F+ + NPNS DK+FR QQV
Sbjct:   79 GWVFAEAETSVAVTEREVLALLGEPVPLTGEAAGRQTWHWDSKKGKDLA--GRKADY-SFSAARNPNSADKVFRTQQV 153          
BLAST of mRNA_E_fasciculatus_S2_contig9303.17361.1 vs.
Match: Terpene (cyclase/mutase family member n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXQ9_TRICV)

HSP 1 Score: 49.3 bits (116), Expect = 5.930e-5
Identity = 34/93 (36.56%), Postives = 42/93 (45.16%), Query Frame = 1
Query:    1 TGWKFSCAQESHQRTEDRWADTGLKLTGEAAGRQSWHWCGAEAGDEASVGSAGEAPT----------------FNPSVNPNSGDKIFRAQQVR 231
            T   FS   E +   E     +G KLTGE  GRQ W W   +    A   S+G  P                 F+PSVNPNS D++FRAQ +R
Sbjct:   15 TEGSFSGRIEQNGGAEKNGGGSGPKLTGEPFGRQIWTW---DEDGGALSSSSGSGPDENAVLEMASGGRPHSGFDPSVNPNSCDRVFRAQMIR 104          
BLAST of mRNA_E_fasciculatus_S2_contig9303.17361.1 vs.
Match: Terpene (cyclase/mutase family member n=3 Tax=Lotharella TaxID=74819 RepID=A0A7S3YZC8_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 5.930e-5
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1
Query:    4 GWKFSCAQESHQRTEDRWADTGLKLTGEAAGRQSWHWCGAEAGDEASVGSAG-EAPTFNPSVNPNSGDKIFRAQQV 228
            GW  + + ESH  T       G  LTGE  GRQ+WH+      D+    + G +  T + SVNPN+ DK+FRAQ++
Sbjct:   54 GWFSAVSSESHDLTLKE-LPNGEPLTGEPFGRQTWHF------DQKKKTAGGKDTITHDCSVNPNTSDKLFRAQRI 122          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9303.17361.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Cycloartenol1.930e-4187.01synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
SQHop_cyclase_N4.750e-4083.12domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Terpene6.830e-944.00cyclase/mutase family member n=1 Tax=Haptolina bre... [more]
Cycloartenol1.860e-643.37synthase n=1 Tax=Chrysochromulina tobinii TaxID=14... [more]
Hypothetical4.710e-642.35protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
Cycloartenol6.240e-643.59synthase n=1 Tax=Nannochloropsis gaditana TaxID=72... [more]
AGC-kinase6.630e-646.15C-terminal domain-containing protein n=1 Tax=Nanno... [more]
Terpene5.930e-536.56cyclase/mutase family member n=1 Tax=Trieres chine... [more]
Terpene5.930e-539.47cyclase/mutase family member n=3 Tax=Lotharella Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9303contigE_fasciculatus_S2_contig9303:5626..5856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score154.1
Seed ortholog evalue2.7e-35
Seed eggNOG ortholog2880.D8LFF9
Model size231
KEGG rclassRC00874,RC01582,RC01850,RC01851
KEGG koko:K01852,ko:K01853,ko:K06045
KEGG ReactionR03199,R03200,R07322,R07323
KEGG Pathwayko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
KEGG ModuleM00101
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.oxidosqualene cyclase activity
EggNOG OGsCOG1657@1,KOG0497@2759
EC4.2.1.129,5.4.99.17,5.4.99.7,5.4.99.8
Cds size231
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842580.529217-CDS-E_fasciculatus_S2_contig9303:5625..58561696842580.529217-CDS-E_fasciculatus_S2_contig9303:5625..5856Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9303 5626..5856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9303.17361.1prot_E_fasciculatus_S2_contig9303.17361.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9303 5626..5856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9303.17361.1

>prot_E_fasciculatus_S2_contig9303.17361.1 ID=prot_E_fasciculatus_S2_contig9303.17361.1|Name=mRNA_E_fasciculatus_S2_contig9303.17361.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=77bp
TGWKFSCAQESHQRTEDRWADTGLKLTGEAAGRQSWHWCGAEAGDEASVG
SAGEAPTFNPSVNPNSGDKIFRAQQVR
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mRNA from alignment at E_fasciculatus_S2_contig9303:5626..5856+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9303.17361.1 ID=mRNA_E_fasciculatus_S2_contig9303.17361.1|Name=mRNA_E_fasciculatus_S2_contig9303.17361.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=231bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9303:5626..5856+ (Ectocarpus fasciculatus EfasUO2)
ACAGGATGGAAGTTCTCCTGCGCCCAAGAATCCCACCAGCGAACCGAGGA CAGGTGGGCCGACACCGGGCTCAAGCTCACGGGAGAGGCCGCGGGAAGGC AGTCATGGCATTGGTGTGGGGCGGAAGCCGGAGATGAGGCGTCCGTTGGT TCGGCAGGCGAAGCTCCGACCTTCAACCCATCGGTCAATCCCAACTCTGG CGACAAGATTTTTCGGGCTCAGCAAGTGAGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9303:5626..5856+

>mRNA_E_fasciculatus_S2_contig9303.17361.1 ID=mRNA_E_fasciculatus_S2_contig9303.17361.1|Name=mRNA_E_fasciculatus_S2_contig9303.17361.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=231bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9303:5626..5856+ (Ectocarpus fasciculatus EfasUO2)
ACAGGATGGAAGTTCTCCTGCGCCCAAGAATCCCACCAGCGAACCGAGGA
CAGGTGGGCCGACACCGGGCTCAAGCTCACGGGAGAGGCCGCGGGAAGGC
AGTCATGGCATTGGTGTGGGGCGGAAGCCGGAGATGAGGCGTCCGTTGGT
TCGGCAGGCGAAGCTCCGACCTTCAACCCATCGGTCAATCCCAACTCTGG
CGACAAGATTTTTCGGGCTCAGCAAGTGAGA
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