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Homology
BLAST of mRNA_E_fasciculatus_S2_contig93.17353.1 vs.
Match: DUF4149 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKX2_9PHAE) HSP 1 Score: 406 bits (1043), Expect = 9.660e-138 Identity = 227/269 (84.39%), Postives = 242/269 (89.96%), Query Frame = 1
Query: 118 MVLRRSLACAFAGLVLLGIVDGFVAPAFIPAATAGARVKSPVASSA---TIAGAAPRAPLVARRRSALAMTANKAPDKTIITNAAPLTFAAGCSAVAGAVAKINPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRHSSEFASLLGKLAPSFLQLSVAMIMSLGTSSLVIGRANGVQLGIIGISLGITLYNAIVLEPSAIEALEEEQAVEKVLRGPIKQKVAAQEDLPKIQANLANYLGVEVLLDFLCILCAICYAWDLSSSITFA 915
MVLR SLACA LVLLGIVDGF+APAFIP ATAGARVK PVASSA TIAGAAPRAPLV RR AL MTANKAPD+T+I NA PLTFAAGCSAVA AVA+I+PHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMR SSEFASLLGKL PS+LQLSVAMIMSLGTSSLVIG AN QL I+GI+LGITLYNAIVLEPSA+EALEEEQA+E LRGP KQK+AAQEDLPK+ ANLAN+LG EVLLDFLCILCA+CYAWDL+SSITFA
Sbjct: 1 MVLRGSLACA---LVLLGIVDGFIAPAFIPPATAGARVKLPVASSAPTATIAGAAPRAPLVDRRSRALTMTANKAPDQTVIANAVPLTFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRDSSEFASLLGKLGPSYLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQAIEIKLRGPNKQKIAAQEDLPKMNANLANFLGAEVLLDFLCILCAVCYAWDLASSITFA 266
BLAST of mRNA_E_fasciculatus_S2_contig93.17353.1 vs.
Match: DUF4149 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR36_ECTSI) HSP 1 Score: 315 bits (807), Expect = 6.360e-103 Identity = 180/207 (86.96%), Postives = 187/207 (90.34%), Query Frame = 1
Query: 118 MVLRRSLACAFAGLVLLGIVDGFVAPAFIPAATAGARVKSPVASSATIAGAAPRAPLVARRRSALAMTANKAPDKTIITNAAPLTFAAGCSAVAGAVAKINPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRHSSEFASLLGKLAPSFLQLSVAMIMSLGTSSLVIGRANGVQLGIIGISLGITLYNAIVLEPSAIEALEEEQ 738
MV RRSLACA LVLLGIVDGF+APAFIP ATAGARVK PVASS TIAGAA RAP VARR SAL MTANKAPD+T I NAAPLTFAAGCSAVA AVA+I+PHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMR SSEFASLLGKL PS+LQLSVAMIMSLGTSSLVIG AN QL I+GI+LGITLYNAIVLEPSAIEALEEEQ
Sbjct: 1 MVRRRSLACA---LVLLGIVDGFIAPAFIPPATAGARVKLPVASSGTIAGAARRAPFVARRSSALTMTANKAPDRTAIANAAPLTFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRDSSEFASLLGKLGPSYLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAIEALEEEQ 204
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1448 |
| Hectar predicted targeting category | chloroplast |
| Exons | 9 |
| Ec32 ortholog description | Domain of unknown function DUF4149 |
| Ec32 ortholog | Ec-06_004500.1 |
| Cds size | 801 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842579.7855115-UTR-E_fasciculatus_S2_contig93:38189..38295 | 1696842579.7855115-UTR-E_fasciculatus_S2_contig93:38189..38295 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig93 38190..38295 + |
| 1696842579.8031666-UTR-E_fasciculatus_S2_contig93:38321..38332 | 1696842579.8031666-UTR-E_fasciculatus_S2_contig93:38321..38332 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig93 38322..38332 + |
| 1696842579.9221752-UTR-E_fasciculatus_S2_contig93:43255..43785 | 1696842579.9221752-UTR-E_fasciculatus_S2_contig93:43255..43785 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig93 43256..43785 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842579.8163836-CDS-E_fasciculatus_S2_contig93:38332..38468 | 1696842579.8163836-CDS-E_fasciculatus_S2_contig93:38332..38468 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig93 38333..38468 + |
| 1696842579.8276157-CDS-E_fasciculatus_S2_contig93:39241..39330 | 1696842579.8276157-CDS-E_fasciculatus_S2_contig93:39241..39330 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig93 39242..39330 + |
| 1696842579.8402596-CDS-E_fasciculatus_S2_contig93:39545..39629 | 1696842579.8402596-CDS-E_fasciculatus_S2_contig93:39545..39629 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig93 39546..39629 + |
| 1696842579.859171-CDS-E_fasciculatus_S2_contig93:40452..40595 | 1696842579.859171-CDS-E_fasciculatus_S2_contig93:40452..40595 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig93 40453..40595 + |
| 1696842579.871069-CDS-E_fasciculatus_S2_contig93:41374..41444 | 1696842579.871069-CDS-E_fasciculatus_S2_contig93:41374..41444 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig93 41375..41444 + |
| 1696842579.881781-CDS-E_fasciculatus_S2_contig93:41708..41807 | 1696842579.881781-CDS-E_fasciculatus_S2_contig93:41708..41807 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig93 41709..41807 + |
| 1696842579.9004002-CDS-E_fasciculatus_S2_contig93:42564..42646 | 1696842579.9004002-CDS-E_fasciculatus_S2_contig93:42564..42646 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig93 42565..42646 + |
| 1696842579.910267-CDS-E_fasciculatus_S2_contig93:43157..43255 | 1696842579.910267-CDS-E_fasciculatus_S2_contig93:43157..43255 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig93 43158..43255 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig93.17353.1 >prot_E_fasciculatus_S2_contig93.17353.1 ID=prot_E_fasciculatus_S2_contig93.17353.1|Name=mRNA_E_fasciculatus_S2_contig93.17353.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=267bp
MVLRRSLACAFAGLVLLGIVDGFVAPAFIPAATAGARVKSPVASSATIAG AAPRAPLVARRRSALAMTANKAPDKTIITNAAPLTFAAGCSAVAGAVAKI NPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRHSSEFASLLGKLAP SFLQLSVAMIMSLGTSSLVIGRANGVQLGIIGISLGITLYNAIVLEPSAI EALEEEQAVEKVLRGPIKQKVAAQEDLPKIQANLANYLGVEVLLDFLCIL CAICYAWDLSSSITFA* back to topmRNA from alignment at E_fasciculatus_S2_contig93:38190..43785+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig93.17353.1 ID=mRNA_E_fasciculatus_S2_contig93.17353.1|Name=mRNA_E_fasciculatus_S2_contig93.17353.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5596bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig93:38190..43785+ (Ectocarpus fasciculatus EfasUO2) CCGCACACCCCCACATACACACAACACCAGCACCCCGGGAGACAGAAAGA
AATCCAGGCACCAGCACCAGGCCGGTGTCTTCTCCTTGAGTACTTCGCTG
CTGTTTGTTGCAAGCAAACGCAGTGCTGCGAGTCAACTCTGTCATGGTTC
TCAGGAGGAGCCTCGCGTGTGCCTTTGCTGGTCTGGTTCTCCTTGGCATC
GTCGATGGATTCGTCGCGCCTGCTTTCATCCCGGCAGCGACAGCGGGGGC
ACGGGTCAAGTCACCGGTGGCAAGCTCAGGTAAACCAACGTGTTCTGGCG
CGGGGAGAGTTAGTAGTGAAAGGAGGGGAGGGGGGGCATGTTCATGTGAA
AGATGGAAATGTTCCCGTTCACGACCGATCGGTCGATGACCACACCACAA
GTTCAAACTTCAAGCCGGCGTGGGTGCTTGCTACAATCTGTTGCAGGTCT
GTAGACTTCCTTTCTAAGCCGAACACGTGGCCACCTCCCTTTCTGACGGG
CTTGGTGCCTACTGCTGGCAGAGAGCGACAGAGAGGGTGTGAGAGCGACG
TACCAGATAGAATTGTGCCGGCGAAGTCGTGTTGCCACAGGTATCAGAAC
TGAACCTGAACTGAACCAGCGGTCTTGACACACCAGTCACACCAGCACAC
CAGGTTCCTTACCCCGTGTTGCCTCACACGCGTTGCAATTTGTTAATCTG
GTGAAAGTTCAGAAGCGTGGGGCAAAACATAGGTTTCCATTCGTCAATAT
GGTGGCGTCGGACCAAGCGCTTGTAGGTTCTTAATTTTTTCTTCAGAGGA
TCAGAAAGAGCCAGCCCAGATTTCCTACTCGCCACGGAAACGACGTTGTA
AAAGGCAGCGGTGAAACTGACCGTGGCGTGCTCGACCTTGTCGATTGAAA
GCCTTGCACACCCGCAGTCAAAGCGCCAAACGCTATTTGGCCACAACATC
AGTGTTGCAGTGGCTCACCCCCTCGAAAGGCATCAACAATGTCCCCGGCT
CCTTACGGTATTCACTCAACTGAAACTGTGGGTTCTGGTTCAGCACCAAC
AGCAACCATAGCCGGAGCGGCACCGAGGGCTCCGTTGGTCGCCAGGAGAA
GAAGCGCTCTAGCAATGACTGCCAACAAGGCACCGGACAAGGTACGCGTG
TTGTTGTATACGCGGCGAATATATCGGTATGTGTCTCAGGCGTCTGTTAC
GTTCGTGGTAGGTTGAACTGGTATAGGTCAATTCGACGAACGCATACCCG
GAGAGTTTCAGCGCGGTCTCACCCCTCCTCTGTGTCTGCATCTCTCTCCA
TCGTGTGTGCTTCTCTGGTTGCCGTGATGCGCATCGTCACGGCACCGAGG
GCGCAGACCATCATAACCAACGCCGCGCCCTTAACCTTCGCCGCGGGGTG
CTCGGCCGTCGCCGGCGCGGTTGCTAAGATAAACCCACACGTGAGTGCGA
GGATGGGCCCCGCTCCCCGTGGTATGGATTCATCTTATGTATGCAGATGC
TTTCTGAACTAAGGGCTCTCGTAGTACCTACAGAGGGCATCGCCGCTGCA
TGCTGCTGGAGTGTACGCTTCACATGTCACGCGGGTGTTGTGATTCGTTG
GTATCGTTTCGGCAACGGCTCTCGCCCTCCTCCGACAACAGATCTGGCGC
AGATCCATACCAGCTATGCTATGTTGGCACGCAGCAGCACCGTGGGTTTG
TTTACCTTAACGTTTACTCGGCATCGAAAAAGTGATATGGTAGGCGTTTG
TGCCGACCCACTCCCCTCCATTTGTCTCCATACACATGCTCGCGTAGATA
GGTGCAGGGGTATCGAACCAACGTGCATGTATGTGTAGGCCCTGTTTTAG
ATTGCCTCAAGCCTCAATGTGCCACTGCCAGTTATCTAGGGCATCCCTAG
TATGTTGTGTATAGCCGGTAAAGAGTCTCACCAACTTTCGCATCGATCCA
CGGATAGGATTTTTTGCTAAGGCGAGTTCAAGGCACTGCCTGCACGGCCG
CTCCTGATAGTTTGCACCTGGTGAAAGGTTTCAAGGCACTGCCTGCACCG
CCGCTCCTGATAGTTTGCACCTGGTGAAAGGTTTACCAAATTTCTCACGC
CCGTCAAGTATTGCACGCCGTTTAGACCATTGTATCGCTTGGAGACGTTT
GGGAAGCTGCGGTTCTGGCGGCATGCACATACAGTACCGTAGCGTTGTTG
CATCACACTAAAGTACCCAGTTCCTGTTTCTATCACTGCTACGCGGCGTC
GTGTGTGAGACAGGCCGCCGCGTTTGTTCAGCTCGTGTGCCTCTCTATCT
GGCTCGGAATGAGCGTCTACGCCACCTTCATCTGGCCGGTCATCACAGGC
TTGAACATGCGGCACTCGTCCGAGTTCGCATCTTTGCTCGGGAAGCTGGC
ACCATCGTGAGTCGACACGTCTGTTGGTTTTTGTCATGCGGGTGTGCCCC
GCACATGCCGTTTTTCTGGTTTGGGCATGCTTTTGTATCTTGCGCCGTAT
TATCCTCTTCTTCTCACCGACCAGAGGCGTGGAACGCGTACGATACCCCG
CCCGCTCGCGTCAATTTACCCGCAGTAAGCGAGTCTGGCTTCTTTGAATG
GGTTTTAAGGTAGATTTGTATGGTTCAGAGCTCTACCTTTTGCCTTGTGT
CCCATGTCTCAGCGTAAGTCTTTGGATGAGAGGGCCGGCACTTACTGACG
CAAAAGACAATAAGACGACACGCAAGAGTTCTAGTACTACCTATCTTGAC
TGCGATAACCCTTTCATCAGGTTGGTCTGTCAAGGACAATGAACAGCGAT
GTGTTGCGTAACTGACTACGCTGTGGATGAGCAGCTTTCTCTCGCCGACA
ACAAAGCATGCGAACAGAAATTGTTCGAGTGCCCTCAGATGTTCATCTGC
CCAGCGTCAGATCAGATTGGAGAAGCATGGCGCTTTCAGTACTCGAGTTG
ACATCAATCATAATTGAATCTCCCCCCCGGGCCCCACCCCCTGCCCCTCC
CCGTATTTCCACTGCCAAAATAACACCTCGTCGGGTGTGGTGCTACTCTT
CACCTACGCTGCGAAACCGACGCTACCTATGCTGTGGTTGCCCTCGTCCC
ATCGTTCCGGCGGGACGCGCGTCTGGGGCATATCCATGCTTTGCGTGGGT
GCGTTGCTTCCTTTTCGTTTGCGCCCTGAGAACAGTTTCCTTCAGCTATC
CGTGGCGATGATCATGAGCCTGGGAACGTCGAGTCTCGTGATTGGACGCG
CAAACGTGAGAGAGTCCCCTGCGTATGGATATCGCACGGATCGCACGGGC
CGCTCGAATGTCTGCACGAACAGGACGACGAGTCGGACGTTGTTGGTGGT
TGTCACATGTTGTTTTCCCGGTTGTTTGCAGTTGCCGTGACCATGTAGAA
TGCAGATTATGTGCCCGGACGAAGTGGTTCCCCCCCCTACGTCTGTCAGC
CAACCGGACCCCCCCCCTCGCCCTCCACGCGCGCGCGCCATCCCCCTCCT
TGACACACACGCGCCGTAGGGGGTGCAGCTTGGTATCATCGGGATATCCC
TCGGCATCACTTTATACAACGCCATCGTGCTGGAGCCGTCGGCAATAGAG
GCTCTTGAGGAGGAACAGGTTAGCCCTGCCGATGGTGTTGTTTTCTTTGA
CGGGGGTCGTCGCGATGTGTGTCCCTGGCACGTGCGTTGGGATGCGCGCG
CTTTCCTTGCACCGATGCCTTGGCTGCGTGGATCCCGTACCAGCTCTTCC
GATGGTGAAACACGGGCAGTCGTTGCTGCGATAAACCGCGCCCCTTTGGT
TTCCACCGTCCCCCCCCGACCTGCTACCCCTCTCGAGGACGCGTGGTCAA
TGGTCTAACGACTATGGCATGGAAACCATAAGAGTACCCCCCCCCCCCCG
ACCTGCTATTGTTCGGCGAAGGCATGTTCCAGATGTGTGTGTGCGTGTGT
GGGTGTGTGCGTGTGTGCGTGTGTGTGCGTGTGTGCGTGTGTGTGCGTGC
GTGTGCGTGTGTGCGTGTGTGCGTGTGTGCGTTGCACTAGTTTCTGCCAA
CCGGCTGTGGATCTTGGCCGTTGTTTATATTCTCTGTGTTGACGTAGGTG
TGCGTGGTTTGTGGTGGGCATTGTCTCTAAGCTAGGGCGACGGTTGTTGT
CGCTGTCGCGGTTGAGGTCTTGTGTTGTCCGCTGTGAGTGCAGTGTCTGG
CGGATTGCTGCTTTCGCTCACGTGGTTATGCAAGAGCGAGGGCCGAAAAA
CAGAAGATCGCAGCACGCCCGGAGGGGCGTGAAATGCTTGCGTTCGATAG
GTGACAATACATGCGACCATCGCTGGTGCTTCTGCTGCTCCTACTGCTAT
TGCGTCCGTCACCTTTTTTCCTCAGGCAGTAGAAAAAGTATTGCGAGGGC
CGATTAAGCAGAAGGTCGCAGCACAAGAAGACCTTCCCAAGATTCAGGCA
AATCTAGGTCAGTCGAACACCCGGCCGGTAAATATTTCCTCAGTGTCCGA
CGAATGTTGCCGGACGTGGACCGTCCGCTTTGTCGATTCAGTGCGGCACT
CGATCCATGCACACACACTGAACTGTTTTCAACTAAGCCATGTTCGTAGA
ACGCTGTTGCTGGTGCAATTGTTTTCTGTTTCAGAGCATAGAATCAACCG
ACCGCGCTTGTTTTATTGTCTTGTTGCACGAACGCCCCTGGCCGCCCAAA
CGGGCTAGGGATGAGTACCTGTCGGACACCACCGCCCCCGCCCCTTTACC
CTTCCGTCAACGGCGACAGCACCAATCATCAACAGTAATGCCATCGCTCG
GTGGTGAACCGTAGTCACTTGCCTTGCTCGGTGTGCTGCTCCGTTCGTGG
TGTACAAGATTATCGACGCACAATTTGGACCATCAACGTTTCTTCGTCAA
ATTTGAATGTTTTCCTCGTGTTGTTTCGTTCCGTCTTGTTCTTGCTCCCA
AATTATGTTTCTGAAAAGCCAACTACCTAGGCGTGGAGGTGTTGCTGGAC
TTCTTGTGCATTCTGTGCGCGATCTGCTACGCGTGGGACCTATCCTCTTC
CATCACCTTCGCTTGATGCTTCGGTCCACCAATCAGTGTTCATTGGCTGC
TTGGTCGCACGATGGGTGTGGAGTTGATGTTCAGTGTATTTGCCGGCGGT
CCGCTTCTAGTCGGCGGTTGTCAAAAATTGCTTTGTTGAAGTCGTGGTTG
ATATTTCAGCGTGGCCGTCCATGTAGGTCGTGGACCTGTTCCGTGGTTGC
CGTTCAATGTTCGGACTGGTCCGTGAATAAGTATGAGGCAGCGGTAGGAC
GACGCTTCGTGAAATTCATCCCCCCTCTCAACATGAAGTCATGCGCGAAG
CGTGAATGTGTGCCATATCATGCTGTTGCGGGGGGGGGCGCGAAAATGCT
CCATGAATATTCGTGGATGGTGGGGCTCGGCGTATCTATGGCTATCGCGA
GGGAAACCCCCCTTTATTATCTTGGGAGCACTGATTTCGCCAAGTCAGTA
CCTAGAGACATGACCAACACGGCGTGAAGTCGTGAGTATGAAAGTGGTTT
GTCCACGATCAAGTGGAATACAGGAATGACATGGACTTGTCTTGTG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig93:38190..43785+ >mRNA_E_fasciculatus_S2_contig93.17353.1 ID=mRNA_E_fasciculatus_S2_contig93.17353.1|Name=mRNA_E_fasciculatus_S2_contig93.17353.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=801bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig93:38190..43785+ (Ectocarpus fasciculatus EfasUO2) ATGGTTCTCAGGAGGAGCCTCGCGTGTGCCTTTGCTGGTCTGGTTCTCCT TGGCATCGTCGATGGATTCGTCGCGCCTGCTTTCATCCCGGCAGCGACAG CGGGGGCACGGGTCAAGTCACCGGTGGCAAGCTCAGCAACCATAGCCGGA GCGGCACCGAGGGCTCCGTTGGTCGCCAGGAGAAGAAGCGCTCTAGCAAT GACTGCCAACAAGGCACCGGACAAGACCATCATAACCAACGCCGCGCCCT TAACCTTCGCCGCGGGGTGCTCGGCCGTCGCCGGCGCGGTTGCTAAGATA AACCCACACGCCGCCGCGTTTGTTCAGCTCGTGTGCCTCTCTATCTGGCT CGGAATGAGCGTCTACGCCACCTTCATCTGGCCGGTCATCACAGGCTTGA ACATGCGGCACTCGTCCGAGTTCGCATCTTTGCTCGGGAAGCTGGCACCA TCTTTCCTTCAGCTATCCGTGGCGATGATCATGAGCCTGGGAACGTCGAG TCTCGTGATTGGACGCGCAAACGGGGTGCAGCTTGGTATCATCGGGATAT CCCTCGGCATCACTTTATACAACGCCATCGTGCTGGAGCCGTCGGCAATA GAGGCTCTTGAGGAGGAACAGGCAGTAGAAAAAGTATTGCGAGGGCCGAT TAAGCAGAAGGTCGCAGCACAAGAAGACCTTCCCAAGATTCAGGCAAATC TAGCCAACTACCTAGGCGTGGAGGTGTTGCTGGACTTCTTGTGCATTCTG TGCGCGATCTGCTACGCGTGGGACCTATCCTCTTCCATCACCTTCGCTTG A back to top
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