mRNA_E_fasciculatus_S2_contig929.17342.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig929.17342.1 vs.
Match: 60S (ribosomal protein L36 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=B7ZGM7_9PHAE) HSP 1 Score: 176 bits (445), Expect = 1.080e-53 Identity = 95/103 (92.23%), Postives = 101/103 (98.06%), Query Frame = 1
Query: 1 MAPVPKKLAGASATEKRARKARPSHNKGRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQAM 309
MAPVPK++AG S+T+KRA+KARPSH+KGRLG RVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQAM
Sbjct: 8 MAPVPKQIAG-SSTQKRAQKARPSHHKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQAM 109
BLAST of mRNA_E_fasciculatus_S2_contig929.17342.1 vs.
Match: 60S (ribosomal protein L36 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH51_AURAN) HSP 1 Score: 135 bits (339), Expect = 8.700e-38 Identity = 69/90 (76.67%), Postives = 80/90 (88.89%), Query Frame = 1
Query: 40 TEKRARKARPSHNKGRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQAM 309
TEK A+ RP H KGRL R K+VREVVREVAGL+PYEKRILDMIKTGGAS+EKR+YKFAK RLGTHKRA+ KRED+K++Y++MRARQAM
Sbjct: 6 TEKLAKAQRPKHRKGRLSARTKVVREVVREVAGLVPYEKRILDMIKTGGASSEKRMYKFAKMRLGTHKRAIKKREDMKDIYAQMRARQAM 95
BLAST of mRNA_E_fasciculatus_S2_contig929.17342.1 vs.
Match: 60S (ribosomal protein L36 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KD91_HETAK) HSP 1 Score: 133 bits (334), Expect = 6.710e-37 Identity = 65/89 (73.03%), Postives = 78/89 (87.64%), Query Frame = 1
Query: 43 EKRARKARPSHNKGRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQAM 309
EKR +K RP H KG+ G RV +VREV+REV+GLMPYE+R+LDM+KTGG +EKRIYKFAKRRLGTHKRALAKRE++K +Y K+RARQAM
Sbjct: 18 EKREKKTRPKHRKGKKGKRVAVVREVIREVSGLMPYERRMLDMVKTGGVGSEKRIYKFAKRRLGTHKRALAKREEVKGIYGKIRARQAM 106
BLAST of mRNA_E_fasciculatus_S2_contig929.17342.1 vs.
Match: 60S (ribosomal protein L36 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZT3_THAPS) HSP 1 Score: 130 bits (327), Expect = 7.460e-36 Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 1
Query: 40 TEKRARKARPSHNKGRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQA 306
TE++ R ARPS +KGRLG R + RE+ REVAGL PYE+RILDMIKTGG+SA+KRIYKFAKRRLG+HKRALAKREDIK V SKMRA+QA
Sbjct: 16 TEQKERAARPSQSKGRLGKRTALCREIAREVAGLSPYERRILDMIKTGGSSADKRIYKFAKRRLGSHKRALAKREDIKAVNSKMRAKQA 104
BLAST of mRNA_E_fasciculatus_S2_contig929.17342.1 vs.
Match: 60S (ribosomal protein L36 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST3_9STRA) HSP 1 Score: 127 bits (320), Expect = 7.800e-35 Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 1
Query: 55 RKARPSHNKGRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQ 303
+K +PS KGRLG RV +VR+VVREVAGLMPYEKRILDMIK GGASAEKR+YKFAK+RLGTHKRALAKR+DIK++Y+K RA Q
Sbjct: 18 KKPKPSARKGRLGKRVSVVRQVVREVAGLMPYEKRILDMIKVGGASAEKRMYKFAKKRLGTHKRALAKRDDIKDMYAKQRAHQ 100
BLAST of mRNA_E_fasciculatus_S2_contig929.17342.1 vs.
Match: 60S (ribosomal protein L36 n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0T5I4_THAOC) HSP 1 Score: 126 bits (316), Expect = 3.430e-34 Identity = 64/89 (71.91%), Postives = 77/89 (86.52%), Query Frame = 1
Query: 40 TEKRARKARPSHNKGRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQA 306
TE+R R A+PS KG+LG R + RE+ REVAGL PYE+RILDMIKTGG++A+KRIYKFAKRRLG+HKRA+AKREDIK + SKMRA+QA
Sbjct: 16 TEQRERAAKPSRTKGKLGKRTALCREIAREVAGLSPYERRILDMIKTGGSAADKRIYKFAKRRLGSHKRAVAKREDIKAINSKMRAKQA 104
BLAST of mRNA_E_fasciculatus_S2_contig929.17342.1 vs.
Match: 60S (ribosomal protein L36 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHM3_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.270e-33 Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 1
Query: 43 EKRARKARPSHNKGRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQA 306
EK AR A+PSH KG+ G R M RE+ REV GL PYE+RILDMIKTGG++A+KRIYKFAK+RLG+HKRALAKREDIKEV + RARQA
Sbjct: 22 EKLARSAKPSHKKGKKGKRTAMCREIAREVCGLSPYERRILDMIKTGGSAADKRIYKFAKKRLGSHKRALAKREDIKEVNAAQRARQA 109
BLAST of mRNA_E_fasciculatus_S2_contig929.17342.1 vs.
Match: 60S (ribosomal protein L36 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2ICR1_9STRA) HSP 1 Score: 122 bits (307), Expect = 7.860e-33 Identity = 63/89 (70.79%), Postives = 76/89 (85.39%), Query Frame = 1
Query: 40 TEKRARKARPSHNKGRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQA 306
T R R A+PS+ KG LG RV + RE+ REVAGL PYE+RILDMIKTGG++A+KRIYKFAK+RLG+HKRALAKREDIKEV ++ RA+QA
Sbjct: 16 TTTRERAAKPSYRKGALGKRVSLCREIAREVAGLSPYERRILDMIKTGGSAADKRIYKFAKKRLGSHKRALAKREDIKEVNAQQRAKQA 104
BLAST of mRNA_E_fasciculatus_S2_contig929.17342.1 vs.
Match: 60S (ribosomal protein L36 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EQQ7_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.300e-32 Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 1
Query: 16 KKLAGASATEKRARKARPSHNKGRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQA 306
K +A T +R +K +PSH KG+ R + RE+ REV GL PYE+RILDMIKTGG++A+KRIYKFAKRRLG+HKRALAKREDIKE+ SK RAR A
Sbjct: 8 KGVASGHVTTERPKKVKPSHRKGQSSKRTLLCREIAREVVGLSPYERRILDMIKTGGSAADKRIYKFAKRRLGSHKRALAKREDIKEINSKQRARAA 104
BLAST of mRNA_E_fasciculatus_S2_contig929.17342.1 vs.
Match: 60S (ribosomal protein L36 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZ07_NANGC) HSP 1 Score: 120 bits (302), Expect = 4.470e-32 Identity = 61/81 (75.31%), Postives = 72/81 (88.89%), Query Frame = 1
Query: 64 RPSHNKGRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQA 306
RP+ KG L +VK+VREVVR+V GLMPYEKRILD+IKTGG+ AEK++YKFAKRRLGTH+RAL KRE+IKE YSK+RARQA
Sbjct: 24 RPAGRKGTLVKKVKLVREVVRDVVGLMPYEKRILDVIKTGGSGAEKKVYKFAKRRLGTHRRALKKREEIKEYYSKLRARQA 104 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig929.17342.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig929.17342.1 >prot_E_fasciculatus_S2_contig929.17342.1 ID=prot_E_fasciculatus_S2_contig929.17342.1|Name=mRNA_E_fasciculatus_S2_contig929.17342.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=105bp MAPVPKKLAGASATEKRARKARPSHNKGRLGNRVKMVREVVREVAGLMPYback to top mRNA from alignment at E_fasciculatus_S2_contig929:16232..20994+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig929.17342.1 ID=mRNA_E_fasciculatus_S2_contig929.17342.1|Name=mRNA_E_fasciculatus_S2_contig929.17342.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4763bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig929:16232..20994+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig929:16232..20994+ >mRNA_E_fasciculatus_S2_contig929.17342.1 ID=mRNA_E_fasciculatus_S2_contig929.17342.1|Name=mRNA_E_fasciculatus_S2_contig929.17342.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig929:16232..20994+ (Ectocarpus fasciculatus EfasUO2)back to top |