mRNA_E_fasciculatus_S2_contig9286.17338.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9286.17338.1
Unique NamemRNA_E_fasciculatus_S2_contig9286.17338.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9286.17338.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9286contigE_fasciculatus_S2_contig9286:875..5660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size488
Hectar predicted targeting categoryother localisation
Exons6
Cds size486
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9286.17338.1prot_E_fasciculatus_S2_contig9286.17338.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9286 875..5660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842577.7569551-CDS-E_fasciculatus_S2_contig9286:874..9711696842577.7569551-CDS-E_fasciculatus_S2_contig9286:874..971Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9286 875..971 +
1696842577.7683358-CDS-E_fasciculatus_S2_contig9286:1630..17021696842577.7683358-CDS-E_fasciculatus_S2_contig9286:1630..1702Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9286 1631..1702 +
1696842577.7798944-CDS-E_fasciculatus_S2_contig9286:2395..24671696842577.7798944-CDS-E_fasciculatus_S2_contig9286:2395..2467Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9286 2396..2467 +
1696842577.7909894-CDS-E_fasciculatus_S2_contig9286:3871..39431696842577.7909894-CDS-E_fasciculatus_S2_contig9286:3871..3943Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9286 3872..3943 +
1696842577.802107-CDS-E_fasciculatus_S2_contig9286:4665..47371696842577.802107-CDS-E_fasciculatus_S2_contig9286:4665..4737Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9286 4666..4737 +
1696842577.8129973-CDS-E_fasciculatus_S2_contig9286:5559..56601696842577.8129973-CDS-E_fasciculatus_S2_contig9286:5559..5660Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9286 5560..5660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9286.17338.1

>prot_E_fasciculatus_S2_contig9286.17338.1 ID=prot_E_fasciculatus_S2_contig9286.17338.1|Name=mRNA_E_fasciculatus_S2_contig9286.17338.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=162bp
MNVLFGLIGVIPTELGRLVTLQQLCLDRNGLTGSIPKELGSLIKLTRFNL
SGNKLTESIPADLGRLVRLEVIRLEDNKLTGSIPEALGGLVNLEHLWLSD
NNLAGSIPGELGDLVKLETLYLENNKLRGAIPAKLGNLDALSYVQFGNTG
SKSIFRRGNKLS
back to top

mRNA from alignment at E_fasciculatus_S2_contig9286:875..5660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9286.17338.1 ID=mRNA_E_fasciculatus_S2_contig9286.17338.1|Name=mRNA_E_fasciculatus_S2_contig9286.17338.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4786bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9286:875..5660+ (Ectocarpus fasciculatus EfasUO2)
ATGAATGTGCTGTTCGGTTTAATAGGAGTGATTCCGACGGAACTTGGGAG
GCTGGTCACGCTGCAGCAACTGTGCCTTGACAGGAATGGCCTGACAGGTG
ACTACCCGCGCTCGTTTGAGTGAAATGGTTACCATGTAGACGGTCACCGG
CAACTCCTGAAGCTAAAAGGTGTAACGGGCGACAAGTTAGTTTGGTTGTG
CCACGTGTGTTGCTGACTAAGGTCAGCCGAGAGGAAACCCACCTTCTCGT
TTTTCTAGAAGAAATTGAGATATCAGGTTTGAGTGGTGTATATTTAGTGC
TCTCTTTGCACCAGCTTGTGACACAGCTGGGGTGCCATTAACTTGAGCTT
CGGGAGACCTCTCCGTATCATTCCTGCACAATCGAGAAGCGCTGCTTCGA
AGGAATACTTGGTGATGTAGTTGTCTCGTGGTCTGGACAGCATGTCTCGC
TCGTTCATGCCAGGGCTTGGCACATGTCCTACGACGGGCGACCCTCGCTT
GATATGGAGTGCTATCATATCGCATTTTCTGACAGCAGTTCCTATCGGGG
TGGTCAACGTAAGAGCTCTCAAGTCTTGTAGGTACTCTTACAGAAGCGTC
CAAGGGTTGTCATGATGTCGTTGCATATGCATTTTTGGATTGTACGCAGA
AACGCGACCGGCGATGTGTTGGCCGGAAGAAGCAAGCACGTTTCATTCAA
CGCAGCGCATGGTACAGATGCGGTGGTGTTCGTCTATTGGCCGGGTGTCT
GTGCAGGTTCCATCCCGAAGGAGCTGGGGAGCCTCATCAAGCTGACGCGC
TTTAATCTGTCTGGCAACAAGCTCACAGGTAAGGGTGTTTGTGTTCCTGT
GGTTGCAAGCTTGTGTGGCCCACGAAAAGAGCGAGACGCAGAAGCACGTG
GCGTTCCCGCCGGTGGTCCAGTTCTTGACCTCGTCGACCTACTGGCAACT
AGGATTCCAATACTTCCTGAGTGATCAGTCGTTGGCTATGGAACACACTA
TAAGTCGCGACAGAGCGCACGTGAAAGTGGAAGACACGGAGTGCATCTGC
TCTATTGCAGATTTCTCCCCAAGCACGGCATGAACCATATGTATGGGCTT
GTTGTCTACGATCGAATAGCTGGAGTCCATTTTGTCCAGAATTCGGAACA
TCTCGCAGATTCACGAGTGCCTTTGGACGCTGTAGAGAACATGTAGCGCC
AGCTGTTCTCGAGATCCCTGGCATGAAGACCGACACTTTGATTTCCAATC
ATGTTTAATTTTGTCAGACGTCGACGGAGGCAGGGCTGATAGCTATTTTT
TGTCGGAGGCAATCTAGATATCAACGATTTGCGATGTGAATTCCTCTCTC
GCATTCAGCTGCCCCATAGTTGTTCGTGGCATTGCTTTGCAAACAAGCCT
TCCTTCACCGGTTGGAGACTAGATGTGTGCCGTTCTCGCTCACACGTGGG
GAATTTTCATATCAACACAGCGCAAGGTCCTGGTGAAATCAAAATTCGCC
GACTGCCCGGTGTTCGTGCAGAGTCCATCCCGGCAGACCTGGGGCGCCTG
GTGAGGCTGGAGGTGATTCGCCTCGAAGACAACAAGCTGACAGGTAAGGC
CACGTTCAGTAGATTCTTGTGCGGCCGGGGAAATGTGCTCGACGCACGAA
CCGACTGCGTTCGTTCCGCTGGTCCAGTTGCTGATCTCGCTCACCTACTG
ACAGGTAGGGTGCGGCTTCCAATATCTCCGGATTCACGAGGATTTCGCGT
TTTTAGTGCAAGGAGTTCGATCGCAAGATGATATTGGTTGGGTGAAAGAA
TCAGCTCAACCTTTACCTTCGTCGTTTGAATCTTGATTTCAAGCACCATA
CGATGCAAAAATAACATCGGCTCATGATCGAGCTTTGTCGCTTCAACCGT
ATGGTCGGTGGGTCAAGCATGCCCGGAAGGATGTGTAGACGTGTAGACTG
GGCACCCAGAACGGGTGGAACGGTAGATCACAATACTATACGTTTTATTT
TTCCCTTTGATGGATGGGTGGGATACATATCTGTGAAGAGTATCTCGGCC
GATTGGCCTTCCTCACCTAATCATGGGGGTGTGCATGTCCGACGCAGATG
GCTGGTTGTGAAATTGTGTGCAAATTTTGTGGTATATTCAATGATGAATT
TGAAGAATGTGGTCTTCGGGTTGCAACGGAAGTATTACGGTGCCGAGAGA
GCTTGTGGGGCTGGCGAAGATGAGAGACTATGCCTTGACGGGAATGGCTA
AGTTGTGATCTTCCCGCACTCTGTTGAGTATTCTAGATAGAAGTACTTGC
TCATCGCAGGCATGCCTGGACACGTAGCATACTATACCTTGATGGGAATG
GCTTGACAGGTGGCTTCCCGCGCTCGATTGAGTGAATTCGTTACCATCTA
CATGTCCACCGTCGGAACCTGCTGAAACTACCTGGTGTAATGGGCCAATA
GTTAGGTTTGTTGCGGTACGTATCTTCCCGACTTGGGCCAGCAGAAAGGA
AACCCACCTTCCCGTTTTCTTGCAGAAATGGAGATATTTGGTTCGAGTGG
TGTATATTTGTGCTCTCTTTGCACAAGCTTGTGACGCAGCTGGGATGCCA
TAGACTTGGGCTTTGCAAGATCTCTCCAAACCATTCCTGCACAATCGAGG
ATGCCTGCTTTTACCGAGTGCCTGACGATGATAGTTGTTTGGTCGTCTAG
ACAGCATGTCTCGCTCGGTCATCGAGGGCTTGATACATGTCCTAGGAGGG
GCGATCCTCGCTTGATATGTCCTGTCACATAGCATCTTCTGACAGCAGTT
CCTATCGGGTTGATCAACGTGAGGGTTCTCAAGGTCTTGTGGGTAGTCAC
TGCACAAGCGTCAAGGGTGTCCTGATATCATTGCATACGCATCTGTGGAT
TTGACCCACAGAAGCGACAGGTGTTGTGTTGGCCGGCAGAAGCAAACACG
TTTCATTCAACACGATGGTGCTCGTCCACTGTCGGGTGTCCGTGCAGGTT
CCATCCCGGAGGCGCTGGGGGGCCTGGTTAATCTGGAGCATCTTTGGCTC
AGCGACAACAACCTCGCAGGTAACGGTGTTTGTTCTCTCGTGGGTTGATC
TTTGTTGTGTGGCCCGGAGACGCTGCTCGGCGCAGAACCAGGTGGCGTTC
CCATCGGTTGTCCAGTTGTTGACCTCGTCGACCTACCGGCAACTAGGGTT
GGAATGTTTCCAGAGAAATGCATCCGGCATTGACGGTGGAAGGGGCTTGG
TCATGGCGGAGCACACCTGAAAGTAGCAGATTCGGACAAGCATCTCCTCC
TTTCGCAGAAATCTCCCGAACACGGCATGAAACATGCCATATGAGTTTGT
TGTCAAGGCCTAATAAACTGGAGTCTATTATGAAGAGTTCGGAACATCTC
CCAGATCCACGAATGGATTTGGGTCGCTGTAGACATCATTCAACACCAGC
ATGTTCCCGATCACCCTTGGCGTAAGAAACATGACTTTGATTTCCTATCA
TGTGTGTATCCACCCGAAGCTAGCGAAGCGGGAGGTAGTTGCTGGTTTCG
TCTGAGCTAATCGAGATGTCAACGGTTTGTCATGTATTCCTTTCTCGCAT
CAAGCTGCCCCATTTTTCTTCGTGTCGTTCTGTTGCAAACAATCCTTCTT
CAACGATGTGTAGGCTATATGATGTGCGCCCGGGTCGCACACGCGAGGGG
CATGCTCAATTCAACACAGCGCACAAAATGGGTGCAATGTTGTCTAGAGC
ACATAAAATGAGTGCAATGCTGCTGTGGCTTGTATGTGCAGGATCCATCC
CGGGAGAGCTTGGGGACCTGGTGAAACTAGAGACGCTTTACCTCGAAAAC
AACAAGCTGAGAGGTAAGGGTATTTGTACTCAGGTTAAGTTTTTATGTGG
CCCGGGAAATGTGCTCGACGCACGAACAGATTACGTTCGTTTCGCTGGTC
CAGTTGCTGATCTCGCTCACCCGCTGACAGGTAGGGTGATGGTTCCAATA
TCTCCGGGTTCACGAGACTTCGCGTTTTCGCGTTTTTGGTGGAAGGAGTT
TGATCGCGAGATAATGTTTACGGGGTTGAAGGACCAGCTCAACCTTACCC
TTCGGCGTGTTGAATCTTGATTGCAAGCACCATAAGATGCGAAAAATCAA
TCGGCTCATGATTGAGCTCTGTCGGTTCAACCGTATGGTCGGTGGGTCAA
GCATGCCCGGAAGGATATGTAGACGTACCCAGAACGAGTGGGACGGTAGA
CCATAATACTGTGTATTTGGTTTTCTTTTGATGGATGGGTGGGATACATA
TCTGTGAAGAGTATCTCGGTGGATTGGCCTTTCCGCACCTAATCATGGGT
TCGACGCAGACGGGTGGTTGTGAAATCATGGTTGTTGTTGTTTTTGATAT
GGAGGAGCTTGGTCTCGATGGCAACAATCTTACAGGTAAGGGTGTTGTTC
TCTCGTGGGTTTATCTTTGTTGGGTGGCCCGGAAACGTCGCTCTAGATTC
CCAATATTTATGGAGAAATGTAAAATGGAAATAGGGTTGGAAGGCACTCA
GTCATAGGAGGGAGCACGCTTGGCTATGGAAGAAGCGACGTGTTCGTTCG
AACACGTTTTCGGACACAGCATGGAGCAAACCTATGCTGTTTTTGCGCTC
ATGTTCATATTTTGTTGTGAATGCTGCGTGTGCAGGAGCCATCCCGGCGA
AGCTAGGAAACTTGGATGCTCTTTCGTACGTTCAGTTTGGAAACACCGGA
TCAAAGTCCATCTTTCGCCGTGGCAACAAGCTTTCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9286:875..5660+

>mRNA_E_fasciculatus_S2_contig9286.17338.1 ID=mRNA_E_fasciculatus_S2_contig9286.17338.1|Name=mRNA_E_fasciculatus_S2_contig9286.17338.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=486bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9286:875..5660+ (Ectocarpus fasciculatus EfasUO2)
ATGAATGTGCTGTTCGGTTTAATAGGAGTGATTCCGACGGAACTTGGGAG
GCTGGTCACGCTGCAGCAACTGTGCCTTGACAGGAATGGCCTGACAGGTT
CCATCCCGAAGGAGCTGGGGAGCCTCATCAAGCTGACGCGCTTTAATCTG
TCTGGCAACAAGCTCACAGAGTCCATCCCGGCAGACCTGGGGCGCCTGGT
GAGGCTGGAGGTGATTCGCCTCGAAGACAACAAGCTGACAGGTTCCATCC
CGGAGGCGCTGGGGGGCCTGGTTAATCTGGAGCATCTTTGGCTCAGCGAC
AACAACCTCGCAGGATCCATCCCGGGAGAGCTTGGGGACCTGGTGAAACT
AGAGACGCTTTACCTCGAAAACAACAAGCTGAGAGGAGCCATCCCGGCGA
AGCTAGGAAACTTGGATGCTCTTTCGTACGTTCAGTTTGGAAACACCGGA
TCAAAGTCCATCTTTCGCCGTGGCAACAAGCTTTCC
back to top