mRNA_E_fasciculatus_S2_contig9269.17324.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9269.17324.1
Unique NamemRNA_E_fasciculatus_S2_contig9269.17324.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9269.17324.1 vs.
Match: UBC (core domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ1_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 1.350e-98
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 1 
Query:    1 QVKINRVSDTSPLREDLEKLRQTYSYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDEDALLLGQEGGG 450
            +VKINRVSD SPLREDLEKLRQTY+YGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLE+LQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDEDALLLGQEGGG
Sbjct:   65 KVKINRVSDASPLREDLEKLRQTYAYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEILQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDEDALLLGQEGGG 214
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9269.17324.1 vs.
Match: Survivin (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN8_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 6.920e-89
Identity = 147/150 (98.00%), Postives = 149/150 (99.33%), Query Frame = 1 
Query:    1 QVKINRVSDTSPLREDLEKLRQTYSYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDEDALLLGQEGGG 450
            +VKINRVSDTSPLREDLEKLRQTY+YGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDEDALLLGQE GG
Sbjct:  262 KVKINRVSDTSPLREDLEKLRQTYAYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDEDALLLGQEVGG 411
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9269.17324.1 vs.
Match: Origin (recognition complex subunit 1 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CT61_CRAVI)

HSP 1 Score: 144 bits (362), Expect = 1.350e-35
Identity = 67/140 (47.86%), Postives = 97/140 (69.29%), Query Frame = 1 
Query:    1 QVKINRVSDTSPLREDLEKLRQTYSYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDED 420
            QVKI      S L +DL  + + + Y Y+E+E+ F +DLYPFYPPLVK++RPR QGFMM R+T++EML+LS WS  + M+ V+Q I+  L+ W RL++ SE NDV  +P G+Y E+EH L+ L LV+E+ P  +++   D
Sbjct:  244 QVKIFNFDPESELCQDLSIIEKNFGYNYIELEMMFQIDLYPFYPPLVKVMRPRLQGFMMQRVTNMEMLKLSYWSPTKDMQSVIQEIKAFLQQWARLEVESERNDVQKYPRGAYLEMEHHLLTLALVSEVVPRVNLRYQMD 383
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9269.17324.1 vs.
Match: uncharacterized (protein LOC111706168 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78891B)

HSP 1 Score: 143 bits (361), Expect = 1.690e-35
Identity = 69/133 (51.88%), Postives = 95/133 (71.43%), Query Frame = 1 
Query:    4 VKINRVSDTSPLREDLEKLRQTYSYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHAS 402
            VK++    T  L EDL K+ + + Y Y+E++L F+MDLYPF+PPLVK++RPR QG MM R+T++E+L+L+ W   R MK VL  IR  L TW RLD+ SE ND I +P G+Y ++EH L+RL LV+EI P A+
Sbjct:  261 VKLSNFQGTK-LNEDLMKVNEEFGYDYIELQLDFSMDLYPFFPPLVKVIRPRLQGSMMLRVTTMEILKLTYWDPARDMKSVLTDIRNFLSTWARLDMHSERNDKIRYPNGAYIDIEHHLLRLALVSEIVPRAN 392
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9269.17324.1 vs.
Match: baculoviral (IAP repeat-containing protein 6 isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AB298)

HSP 1 Score: 142 bits (359), Expect = 3.070e-35
Identity = 66/140 (47.14%), Postives = 97/140 (69.29%), Query Frame = 1 
Query:    1 QVKINRVSDTSPLREDLEKLRQTYSYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDED 420
            QVKI      S L +D+  + + + Y Y+E+E+ F +DLYPFYPPLVK++RPR QGFMM R+T++EML+LS WS  + M+ V+Q I+  L+ W RL++ SE NDV  +P G+Y E+EH L+ L LV+E+ P  +++   D
Sbjct:  239 QVKIFDFDPQSELCQDMSVIEKNFGYNYIELEMMFQIDLYPFYPPLVKVMRPRLQGFMMQRVTNMEMLKLSYWSPTKDMQSVIQEIKAFLQQWARLEVESERNDVQKYPRGAYLEMEHHLLTLALVSEVVPRVNLRYQMD 378
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9269.17324.1 vs.
Match: Ofus.G111954 (protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U8G5_OWEFU)

HSP 1 Score: 142 bits (358), Expect = 3.670e-35
Identity = 65/135 (48.15%), Postives = 96/135 (71.11%), Query Frame = 1 
Query:    4 VKINRVSDTSPLREDLEKLRQTYSYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQ 408
            VK+   ++T  L +DL ++ + + Y  +E+E+ F +DLYPFYPPLVK++RPR QG MM R+T++EML+LS W+  + MKGVL  I+  L+ W RL++ SE ND    P GSY E+EH L+RL LV+E+ P A+++
Sbjct:  238 VKLYNFAETCDLGKDLAEVNKLFGYNNIELEMDFAIDLYPFYPPLVKVIRPRLQGSMMQRVTNMEMLKLSYWNPAKDMKGVLSDIKNFLQQWARLEVNSERNDPKRFPTGSYVEIEHHLLRLALVSEVNPRANIK 372
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9269.17324.1 vs.
Match: Baculoviral (IAP repeat-containing protein 6 (Apollon) n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6E229_MYTGA)

HSP 1 Score: 139 bits (350), Expect = 4.620e-34
Identity = 66/147 (44.90%), Postives = 98/147 (66.67%), Query Frame = 1 
Query:    1 QVKINRVSDTSPLREDLEKLRQTYSYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDEDALLLGQE 441
            +VKI        L EDL +++  + Y Y+E+E+TF +DLYPFYPPLVK++RPR Q  MM R+T++EML+LS W   + MK V+Q I+T L+ W RL++ S  ND++ +P G+Y E+EH L+ L LV+E+ P  +   D D   L ++
Sbjct:  660 RVKIFHFDAECGLAEDLLQIQSKFGYNYIELEMTFEIDLYPFYPPLVKVMRPRLQCSMMQRVTNMEMLKLSYWIPTKDMKSVIQDIKTFLQQWARLEVNSPRNDLLKYPYGAYVEIEHHLLTLALVSEVNPRVNYLYDMDISQLTEQ 806
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9269.17324.1 vs.
Match: BIRC6 (n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EH44_MYTCO)

HSP 1 Score: 139 bits (350), Expect = 4.910e-34
Identity = 66/147 (44.90%), Postives = 98/147 (66.67%), Query Frame = 1 
Query:    1 QVKINRVSDTSPLREDLEKLRQTYSYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDEDALLLGQE 441
            +VKI        L EDL +++  + Y Y+E+E+TF +DLYPFYPPLVK++RPR Q  MM R+T++EML+LS W   + MK V+Q I+T L+ W RL++ S  ND++ +P G+Y E+EH L+ L LV+E+ P  +   D D   L ++
Sbjct:  236 RVKIFHFDAECGLAEDLLQIQSKFGYNYIELEMTFEIDLYPFYPPLVKVMRPRLQCSMMQRVTNMEMLKLSYWIPTKDMKSVIQDIKTFLQQWARLEVNSPRNDLLKYPYGAYVEIEHHLLTLALVSEVNPRVNYLYDMDISQLTEQ 382
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9269.17324.1 vs.
Match: UBC (core domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VKA5_CAPTE)

HSP 1 Score: 139 bits (350), Expect = 5.010e-34
Identity = 64/126 (50.79%), Postives = 90/126 (71.43%), Query Frame = 1 
Query:   31 SPLREDLEKLRQTYSYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQ 408
            S L  DLE ++  Y Y Y+E++L F +DLYPFYPPLVK++RP  QG MM R+T++EML+LS W+  + MKGVL  I+  L+ W RL++ SE ND    P GSY ++EH L+RL LV+E+ P A+++
Sbjct:  250 SELSADLEDIQAKYDYNYIELQLDFAIDLYPFYPPLVKVIRPLLQGSMMQRVTNMEMLKLSYWNPAKDMKGVLSDIKVFLQQWARLEVNSERNDRKRFPFGSYVDIEHHLLRLALVSEVNPRANIK 375
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9269.17324.1 vs.
Match: UBC (core domain-containing protein n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8ZNE8_BLAGE)

HSP 1 Score: 139 bits (349), Expect = 6.680e-34
Identity = 68/136 (50.00%), Postives = 93/136 (68.38%), Query Frame = 1 
Query:   10 INRVSDTSPLREDLEKLRQTYSYGYVEMELTFTMDLYPFYPPLVKLVRPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGSELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDE 417
            ++ V     L +DL++L Q Y Y YVE++L FTMDLYPFYPP+VK+VRPR QG MM R+ S++ML+LS W+  R M+ VLQ I+  L TW RLDL SE ND+   P+G+Y ++E+ L+ L  V+EI   A  +  E
Sbjct:  254 LSSVESQGKLDQDLQQLNQLYGYNYVELQLDFTMDLYPFYPPVVKVVRPRLQGSMMLRVASMDMLKLSHWNPARDMRSVLQEIKDYLSTWARLDLKSERNDLERFPQGAYIQMENYLLWLAWVSEIPSRAHRRFPE 389
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9269.17324.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UBC1.350e-9897.33core domain-containing protein (Fragment) n=1 Tax=... [more]
Survivin6.920e-8998.00n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Origin1.350e-3547.86recognition complex subunit 1 n=2 Tax=Crassostrea ... [more]
uncharacterized1.690e-3551.88protein LOC111706168 n=1 Tax=Eurytemora affinis Ta... [more]
baculoviral3.070e-3547.14IAP repeat-containing protein 6 isoform X1 n=2 Tax... [more]
Ofus.G1119543.670e-3548.15protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID... [more]
Baculoviral4.620e-3444.90IAP repeat-containing protein 6 (Apollon) n=1 Tax=... [more]
BIRC64.910e-3444.90n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8E... [more]
UBC5.010e-3450.79core domain-containing protein n=1 Tax=Capitella t... [more]
UBC6.680e-3450.00core domain-containing protein n=1 Tax=Blattella g... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9269contigE_fasciculatus_S2_contig9269:2286..5278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score296.2
Seed ortholog evalue1.4e-77
Seed eggNOG ortholog2880.D7FMN8
Model size714
KEGG koko:K10582,ko:K10586
KEGG Pathwayko04120,ko04214,ko04215,map04120,map04214,map04215
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759,KOG0897@1,KOG0897@2759
EC2.3.2.23
Cds size714
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842576.6299653-CDS-E_fasciculatus_S2_contig9269:2285..24811696842576.6299653-CDS-E_fasciculatus_S2_contig9269:2285..2481Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9269 2286..2481 -
1696842576.6467123-CDS-E_fasciculatus_S2_contig9269:3115..33341696842576.6467123-CDS-E_fasciculatus_S2_contig9269:3115..3334Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9269 3116..3334 -
1696842576.6573157-CDS-E_fasciculatus_S2_contig9269:4568..47201696842576.6573157-CDS-E_fasciculatus_S2_contig9269:4568..4720Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9269 4569..4720 -
1696842576.6700826-CDS-E_fasciculatus_S2_contig9269:5131..52781696842576.6700826-CDS-E_fasciculatus_S2_contig9269:5131..5278Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9269 5132..5278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9269.17324.1prot_E_fasciculatus_S2_contig9269.17324.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9269 2286..5278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9269.17324.1

>prot_E_fasciculatus_S2_contig9269.17324.1 ID=prot_E_fasciculatus_S2_contig9269.17324.1|Name=mRNA_E_fasciculatus_S2_contig9269.17324.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=238bp
QVKINRVSDTSPLREDLEKLRQTYSYGYVEMELTFTMDLYPFYPPLVKLV
RPRFQGFMMGRITSLEMLQLSKWSSVRGMKGVLQGIRTALETWGRLDLGS
ELNDVIVHPEGSYTELEHLLMRLGLVTEIRPHASMQCDEDALLLGQEGGG
GAEMEMEMEMEMDEADDDEGSRQHWAAEDDDQEEEGEGSSVERKRKRNGE
SSTTTSPVGPEKEEGEASNGQGAGAGAGLAGAPSQAKK
back to top

mRNA from alignment at E_fasciculatus_S2_contig9269:2286..5278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9269.17324.1 ID=mRNA_E_fasciculatus_S2_contig9269.17324.1|Name=mRNA_E_fasciculatus_S2_contig9269.17324.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2993bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9269:2286..5278- (Ectocarpus fasciculatus EfasUO2)
CAGGTGAAGATCAACCGTGTTAGCGATACGAGCCCTCTGCGCGAGGACTT
GGAGAAGTTGCGGCAGACCTACTCCTACGGCTACGTGGAGATGGAGCTGA
CCTTCACCATGGATCTATACCCCTTCTATCCCCCCCTGGTTAAGCTGGTG
AGTCCTTGTGGAATCGTCGTCGTCGTCGTCGTCGATGTTTTTTGTGTTGT
GGTGGTGGTGATGGTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGCTTTTGTCAAGTGTCGTGAAGTGGTGTTGCATTTCGTCGTC
GTCAGGTGCCGCTTGCTCCCATCCACCCCCGCTTTTGTGCGAAAATCGTG
CCATTTTCAGCAAGGGCTCGAAACTGTCTCGGGAAGTGGCCCACGAGTCA
CTAAAGGACCAGTACGGGGGCGCGATTCGTTTGTGGCGTGACGAAAGAGA
ACAAAACAAATGGTACAGTTCCTTCCCATTCTCTCGCTGATGCCCATGAG
TAACCCGGCCGGTCGAACCATACACGCCTTGGTGAAACGGATCAAACAAC
AACAACAGGTGCGACCGCGGTTCCAGGGCTTCATGATGGGCCGCATCACG
AGCCTCGAGATGCTGCAGCTGTCCAAGTGGTCCAGCGTTCGAGGCATGAA
GGGGGTGTTGCAGGGGATCAGGACCGCCCTCGAGACCTGGGGGCGTCTCG
ACCTCGGGAGGTATGCTTTTTTTCTTCTTTTTCGCTTTGAGTTTGCTGTC
ACAGCGTTTCTGTTTCTGCCGGTGGCTGTCACACGTTTCATTTTTACATC
GCCTTTTTAGTTTTAGGAAGCATAAATGCATATACTATCACCGAAAGACA
CGACAGTCGAAGAGGATGTGTTGAAGGTGTTTTCTACTTGTACCTTTTTC
TGTTACAGCGGTATAGTGTGTTTGGTCTTGGTGGGAGGTATGACTCTGCA
TCTGATTTTGCTTCGACATGGCTTCCGTCGCACCTCAAGGCCGGATGTTG
GCTGAACCCCATCGATGTTTCCACTGCTTATCAAGGAAATGGGGCGGAAG
TCCGTCCCGGTCGACTTGGTTTTATATGGCGATCGATCTTGATCTTGATC
TGGATACGTCATTGTTGTCGCTCGGCCGCTGTGCATGGGTGATGTCGTGT
ATGTTGTGCTTACGTAGGCCGTGGGATCCGTTTTCCCTGTGAGTTCCACC
ATACCCCTCACGCTTCCTCGCCGTAGTTCCACGATACCCTCGAAGTCTAG
ATGCTGTGTACCTCACGATTCTCACCATACCCATACACCACTCCCAACCA
AACCCGCCCTTTCCATGTTCATGGGGTTGGTTGCTGTTACGCAAGTCCCA
TTTTTTTAGAGGAAGACGCGCTCAGTTTGATTCTTGCATCCTACCCCGCC
CCCACCCCCACCACACACCACACGTACGCAACCCCTCCCACGGCGCCCTC
GGTCTCCTCCATCATCGTCATGAACATGAACATCATCACCTGACCATGAA
CACGAACATCACCATCTGATCATGATCATGAACATGAAGATTATGAACAT
CGTCATCTCATCATGAACATGAACATGAATATCATCACCTGATCGTGAGC
ATGAACATGAAGATTATGAACATCGTCATCTCATCATGATCATGAACATG
AATATCGTCATCTCATCATGATCATGAACATGCATCACCTGATCATGAGC
ATGAACATGAATATCATCACCTGATCATGATCATGAACATGAACACCATC
ACCTGATCATGATCAAGAACAAGAATACCATCACCTGATCATCACCATCT
CATCATGATCATGAACAAGAATATCATCACCTGATCATGAGCATGAACAT
GAACATCTCATCATGATCATGAACATGAGTATCATCACCTGATCATGATC
ATGATCATGGTCATGAATATCGTCATCGTGGCCATCTTCCCCAGTGAGCT
GAACGACGTCATCGTCCACCCGGAAGGGTCCTACACCGAGCTGGAGCACC
TGCTCATGCGGCTGGGGCTAGTGACCGAGATCAGACCCCACGCGTCCATG
CAGTGCGACGAGGACGCCCTGCTGCTGGGGCAGGAAGGAGGAGGAGGGGC
GGAGATGGAGATGGAGATGGAGATGGAGATGGACGAGGCGGATGACGACG
AAGGTTCCCGGCAGTGAGTTGCCACTTGTCTGGTTCACATTTGCGAGATG
CATTAATGAAAGTTGTCGAATGAGGCGACAAACTCGAGGCGAGGCAGTGC
ATGGGTCACTAGCCCCTCCATCCAATGCTATCTACAAGTTACCATTTTTT
GTGTGTGTTTGTGCGTTTTGTACGAGTTTTGGGCACGTACATGAATTATC
TCTTGTGTTTTTTTTTCTAGGCGATGGCCCACGGGTTTCGTCGGCAAAAT
GGACAATAAGCGTGTTGTGGTTGTACTGCCAGTAGTTTAATCAACCACCC
CTCCAAGATATCAAAAGACGAGCGGTAGAGAGCCTCTCTGAGCAACCGGC
CGTACCGCGCGCACGGTTGCCGAAGTGAGTCATCACTACCATATGTGTTA
AATTTTGCGGATAGATGCGTAGAATGTTTTGGGGGGTTGCCTCTCGTACA
GTAGTAGAGGTCCCATTTTAGTTTTAGTGTCGCCATGTGCCCAGAAATCC
ACCAGCACTTGTAACACCGGGCACCGGCACACTAATCAACCGGCAATAAA
CAAAAAAAAACAGGGACCTCTATTGCGGTATCTGGTCGTCTGTCGGTTAT
TGATGATCATTGTTCCGCCGCACCCGCATCCGCATCCTCACCCGAAGGCA
CTGGGCGGCAGAAGACGACGACCAGGAGGAGGAGGGAGAGGGTTCTTCGG
TAGAGCGGAAGCGGAAGCGGAACGGGGAGAGCTCGACGACGACGTCCCCC
GTTGGCCCTGAGAAGGAGGAGGGGGAGGCCAGCAACGGGCAGGGGGCGGG
AGCGGGAGCGGGCTTGGCGGGGGCGCCGAGCCAGGCGAAGAAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9269:2286..5278-

>mRNA_E_fasciculatus_S2_contig9269.17324.1 ID=mRNA_E_fasciculatus_S2_contig9269.17324.1|Name=mRNA_E_fasciculatus_S2_contig9269.17324.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=714bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9269:2286..5278- (Ectocarpus fasciculatus EfasUO2)
CAGGTGAAGATCAACCGTGTTAGCGATACGAGCCCTCTGCGCGAGGACTT
GGAGAAGTTGCGGCAGACCTACTCCTACGGCTACGTGGAGATGGAGCTGA
CCTTCACCATGGATCTATACCCCTTCTATCCCCCCCTGGTTAAGCTGGTG
CGACCGCGGTTCCAGGGCTTCATGATGGGCCGCATCACGAGCCTCGAGAT
GCTGCAGCTGTCCAAGTGGTCCAGCGTTCGAGGCATGAAGGGGGTGTTGC
AGGGGATCAGGACCGCCCTCGAGACCTGGGGGCGTCTCGACCTCGGGAGT
GAGCTGAACGACGTCATCGTCCACCCGGAAGGGTCCTACACCGAGCTGGA
GCACCTGCTCATGCGGCTGGGGCTAGTGACCGAGATCAGACCCCACGCGT
CCATGCAGTGCGACGAGGACGCCCTGCTGCTGGGGCAGGAAGGAGGAGGA
GGGGCGGAGATGGAGATGGAGATGGAGATGGAGATGGACGAGGCGGATGA
CGACGAAGGTTCCCGGCAGCACTGGGCGGCAGAAGACGACGACCAGGAGG
AGGAGGGAGAGGGTTCTTCGGTAGAGCGGAAGCGGAAGCGGAACGGGGAG
AGCTCGACGACGACGTCCCCCGTTGGCCCTGAGAAGGAGGAGGGGGAGGC
CAGCAACGGGCAGGGGGCGGGAGCGGGAGCGGGCTTGGCGGGGGCGCCGA
GCCAGGCGAAGAAG
back to top