mRNA_E_fasciculatus_S2_contig9264.17321.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9264.17321.1
Unique NamemRNA_E_fasciculatus_S2_contig9264.17321.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9264.17321.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9264contigE_fasciculatus_S2_contig9264:1297..1839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size543
Hectar predicted targeting categorysignal anchor
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842576.331441-UTR-E_fasciculatus_S2_contig9264:1296..14131696842576.331441-UTR-E_fasciculatus_S2_contig9264:1296..1413Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9264 1297..1413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842576.3412132-CDS-E_fasciculatus_S2_contig9264:1413..18391696842576.3412132-CDS-E_fasciculatus_S2_contig9264:1413..1839Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9264 1414..1839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9264.17321.1prot_E_fasciculatus_S2_contig9264.17321.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9264 1414..1839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9264.17321.1

>prot_E_fasciculatus_S2_contig9264.17321.1 ID=prot_E_fasciculatus_S2_contig9264.17321.1|Name=mRNA_E_fasciculatus_S2_contig9264.17321.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=142bp
MLEPDRRLNGGVHAFFLSKNILFVLVHFLIWIPTLICAALCNLLPSIMYH
LSVERECGMERNHRDAFSPKRPPLARTVSGECATLGHVGCIFVFSHYRER
CFDPSLRPFYVCGVRGRPRRATSYLNTVFDVVVVDVDERKVD
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mRNA from alignment at E_fasciculatus_S2_contig9264:1297..1839+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9264.17321.1 ID=mRNA_E_fasciculatus_S2_contig9264.17321.1|Name=mRNA_E_fasciculatus_S2_contig9264.17321.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=543bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9264:1297..1839+ (Ectocarpus fasciculatus EfasUO2)
GGAGCGTTGCCGTGAAGGCGTGCGTGTAACTTTCAGCATCGGTGTACGTA
GTGAATGTAAGCCGTTAGTTACCCGCGGGCACGATTCCCGTGCTTGCCGC
TGTTTCCACAGTGGTTCATGCTTGAGCCGGATCGCCGACTTAATGGTGGA
GTTCATGCGTTTTTCCTGTCCAAAAATATACTTTTTGTCCTGGTACACTT
CTTGATTTGGATTCCTACGTTGATATGTGCCGCCCTGTGCAACCTTCTGC
CGAGCATAATGTATCATCTATCTGTAGAGCGTGAATGTGGCATGGAGCGA
AATCATCGTGATGCATTTAGTCCCAAACGCCCGCCACTCGCTCGCACTGT
AAGTGGTGAGTGTGCAACCCTGGGTCACGTTGGTTGCATTTTCGTTTTTT
CGCACTACCGAGAGAGATGCTTCGATCCCTCGCTGAGACCTTTCTATGTC
TGTGGAGTGCGCGGACGTCCGAGGCGCGCCACCTCATATCTGAACACGGT
GTTTGATGTGGTTGTTGTTGATGTTGACGAACGGAAGGTGGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9264:1297..1839+

>mRNA_E_fasciculatus_S2_contig9264.17321.1 ID=mRNA_E_fasciculatus_S2_contig9264.17321.1|Name=mRNA_E_fasciculatus_S2_contig9264.17321.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=426bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9264:1297..1839+ (Ectocarpus fasciculatus EfasUO2)
ATGCTTGAGCCGGATCGCCGACTTAATGGTGGAGTTCATGCGTTTTTCCT
GTCCAAAAATATACTTTTTGTCCTGGTACACTTCTTGATTTGGATTCCTA
CGTTGATATGTGCCGCCCTGTGCAACCTTCTGCCGAGCATAATGTATCAT
CTATCTGTAGAGCGTGAATGTGGCATGGAGCGAAATCATCGTGATGCATT
TAGTCCCAAACGCCCGCCACTCGCTCGCACTGTAAGTGGTGAGTGTGCAA
CCCTGGGTCACGTTGGTTGCATTTTCGTTTTTTCGCACTACCGAGAGAGA
TGCTTCGATCCCTCGCTGAGACCTTTCTATGTCTGTGGAGTGCGCGGACG
TCCGAGGCGCGCCACCTCATATCTGAACACGGTGTTTGATGTGGTTGTTG
TTGATGTTGACGAACGGAAGGTGGAC
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