mRNA_E_fasciculatus_S2_contig9208.17269.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9208.17269.1
Unique NamemRNA_E_fasciculatus_S2_contig9208.17269.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9208.17269.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT8_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 3.020e-38
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    1 MVGGLRRGTAKLLQAGTRRASLQPRFWVYMRRESRKAPPCKTMMRGSLVTRDPSLLRRQQQVGCCVGHRCRRVDIV 228
            M+GGLRRG AK+LQAGTRRASLQ RFWV+MRR SRKAP CKTMM+ S  TRDPSLL RQ QVGCCVGHRCRRVDIV
Sbjct:    4 MIGGLRRGRAKMLQAGTRRASLQRRFWVFMRRASRKAPSCKTMMQDSPATRDPSLLHRQHQVGCCVGHRCRRVDIV 79
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BLAST of mRNA_E_fasciculatus_S2_contig9208.17269.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 3.290e-32
Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 3 
Query:    3 GRRASPRNGKAAAGGDEESVAAAALLGLHAPGVQEGPAVQDHDAGLSGDKGSLPASSAAAGRVLRGSSLPQGGYRAL 233
            GRR SPR GK AAGGD+ESVAAA LLGLHAPGV+EGP VQDHDAGLSGDKGSLPAS AA+GRVLRGSSLPQGGYRAL
Sbjct:   90 GRRTSPRKGKDAAGGDKESVAAAVLLGLHAPGVEEGPFVQDHDAGLSGDKGSLPASPAASGRVLRGSSLPQGGYRAL 166
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9208.17269.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N6_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.020e-10
Identity = 36/57 (63.16%), Postives = 39/57 (68.42%), Query Frame = 3 
Query:   42 GGDEESVAAAALLGLHAPGVQEGPAVQDHDAGLSGDKGSLPASSAAAGRVLRGSSLP 212
            GGD+ESVAAAALL LHA GVQEGPAV DHDAG S  + S P S     R+  G  LP
Sbjct:   13 GGDKESVAAAALLSLHALGVQEGPAVLDHDAGFSRFEHSPPLS-----RITTGCHLP 64
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9208.17269.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized3.020e-3882.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.290e-3288.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.020e-1063.16protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9208contigE_fasciculatus_S2_contig9208:4839..5072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size234
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_005660.1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842571.1939933-CDS-E_fasciculatus_S2_contig9208:4838..50721696842571.1939933-CDS-E_fasciculatus_S2_contig9208:4838..5072Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9208 4839..5072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9208.17269.1prot_E_fasciculatus_S2_contig9208.17269.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9208 4839..5072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9208.17269.1

>prot_E_fasciculatus_S2_contig9208.17269.1 ID=prot_E_fasciculatus_S2_contig9208.17269.1|Name=mRNA_E_fasciculatus_S2_contig9208.17269.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp
MVGGLRRGTAKLLQAGTRRASLQPRFWVYMRRESRKAPPCKTMMRGSLVT
RDPSLLRRQQQVGCCVGHRCRRVDIVL*
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mRNA from alignment at E_fasciculatus_S2_contig9208:4839..5072+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9208.17269.1 ID=mRNA_E_fasciculatus_S2_contig9208.17269.1|Name=mRNA_E_fasciculatus_S2_contig9208.17269.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9208:4839..5072+ (Ectocarpus fasciculatus EfasUO2)
ATGGTAGGAGGGCTTCGCCGAGGAACGGCAAAGCTGCTGCAGGCGGGGAC
GAGGAGAGCGTCGCTGCAGCCGCGCTTTTGGGTCTACATGCGCCGGGAGT
CCAGGAAGGCCCCGCCGTGCAAGACCATGATGCGGGGCTCTCTGGTGACA
AGGGATCCCTCCCTGCTTCGTCGGCAGCAGCAGGTCGGGTGTTGCGTGGG
TCATCGCTGCCGCAGGGTGGATATCGTGCTCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9208:4839..5072+

>mRNA_E_fasciculatus_S2_contig9208.17269.1 ID=mRNA_E_fasciculatus_S2_contig9208.17269.1|Name=mRNA_E_fasciculatus_S2_contig9208.17269.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9208:4839..5072+ (Ectocarpus fasciculatus EfasUO2)
ATGGTAGGAGGGCTTCGCCGAGGAACGGCAAAGCTGCTGCAGGCGGGGAC
GAGGAGAGCGTCGCTGCAGCCGCGCTTTTGGGTCTACATGCGCCGGGAGT
CCAGGAAGGCCCCGCCGTGCAAGACCATGATGCGGGGCTCTCTGGTGACA
AGGGATCCCTCCCTGCTTCGTCGGCAGCAGCAGGTCGGGTGTTGCGTGGG
TCATCGCTGCCGCAGGGTGGATATCGTGCTCTAA
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