mRNA_E_fasciculatus_S2_contig920.17264.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig920.17264.1
Unique NamemRNA_E_fasciculatus_S2_contig920.17264.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig920.17264.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H8_ECTSI)

HSP 1 Score: 561 bits (1446), Expect = 4.780e-193
Identity = 300/340 (88.24%), Postives = 317/340 (93.24%), Query Frame = 3
Query:  183 VNPRQLVNKREEQGFTALHIAVMMGAAGCARKLLDVGADPKARTPEGATPIVMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDEVVGTVPMHTAIYSGRLGVFKTLLAGPGGEVAVNTKDTQGATPLHIACRAKGAAGPVAAMTLLEEGCPVVVDFSVRDDSGRTPLYDAVHHGHAEVVKLLLAAGSDPSLQDSTGLSPLGATAWLGKEACLDAILGTESGLATLELANNLGATPLIFACQENNESIAQKLIAAGASLDAKDLTGQTPYIIAKAQKASACVKLLTEEHGRPSREEESFNFAASSMITNLGGGTLMGMSGGGVNISTTKDKETDG 1202
            +NPR+LVN+REEQGFTALHIAVMMGAA CARKLLD GADPKA TPEGATPI MAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERD+VVGTVP+HTA+YSGRL VF TLLAGPGGEVAVNTKD+QGATPLH ACRAKGAAGPVAAM LLEEGCPV VD SVRDDSGRTPL+DA HHGHAEVVKLLLAAGSDPSLQDS+GLSPL ATAWLGKEACLDAILGTE GLATLEL NNLGATPLIFACQENN+ IA+KLIAAGASLDAKDLTGQTPYIIAKAQKASAC+KLLTEEHGRPS+EEESFNF   SM+TNLGGGTLMGM  GGVN+STT++   DG
Sbjct:    1 MNPRELVNRREEQGFTALHIAVMMGAADCARKLLDAGADPKASTPEGATPITMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDKVVGTVPLHTAVYSGRLEVFNTLLAGPGGEVAVNTKDSQGATPLHSACRAKGAAGPVAAMALLEEGCPVAVDVSVRDDSGRTPLFDAAHHGHAEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELTNNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTEEHGRPSQEEESFNFDGLSMVTNLGGGTLMGMRDGGVNMSTTQETTPDG 340          
BLAST of mRNA_E_fasciculatus_S2_contig920.17264.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW25_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 4.990e-34
Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = 3
Query:  738 KLLLAAGSDPSLQDSTGLSPLGATAWLGKEACLDAILGTESGLATLELANNLGATPLIFACQENNESIAQKLIAAGASLDAKDL 989
            +LLLAAGSDPSLQDS+GLS + AT WLGKEACLD ILGTE GL TLEL NNLGATPLIFACQENN+ IA KLIAAGASLDAKDL
Sbjct:    6 QLLLAAGSDPSLQDSSGLSSVSATTWLGKEACLDPILGTERGLTTLELTNNLGATPLIFACQENNKGIA-KLIAAGASLDAKDL 88          
BLAST of mRNA_E_fasciculatus_S2_contig920.17264.1 vs.
Match: Hypothetical (protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818KRB4_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 1.400e-10
Identity = 78/313 (24.92%), Postives = 133/313 (42.49%), Query Frame = 3
Query:  123 VIEACVEGNTERLTSLVDSAVNPRQLVNKREEQGFTALHIAVMMGAAGCARKLLDV-GADPKARTPEGATPIVMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDEVVGTVPMHTAIYSGRLGVFKTLLAGPGGEVAVNTKDTQGATPLHIACRAKGAAGPVAAMTLLEEGCPVVVDFSVRDDSGRTPLYDAVHHGHAEVVKLLLAAGSDPSLQDSTGLSPLGATAWLGKEACLDAILGTESGLATLELANNLGATPLIFACQENNESIAQKLIAAGASLDAKDLTGQTPYIIAKAQKASACVKLLTE 1058
            + EAC + + E++  L++   N    +N+  EQG TALH         CAR LL+   +    +  EG + + +A               G               T  D  + ++ +H     G L +F  L+     E  V+T D  GA P+H A +  G   P  ++ +L++     VD +  D+  RTP   A      + +++L  AG++P   D   L+ L   A  G  +C+  ++  E    ++E  +  G TPL +A    + +  + L+   A+ + KD  G+TP   A  +    C+K L E
Sbjct:    6 LFEACQKVDIEQIKYLIEQKYN----INQLNEQGRTALHYCCDHQNIDCARLLLEYDNSIINIKDNEGFSALHLACLN------------GNYIMVKYFCEQGADVTLVDNELHSL-IHWITVCGHLDLFDILVQY---EAPVHTSDIYGAFPIHYASQLCGNNDPAKSLAILKKLIDNNVDVNCLDEQKRTPFIWAASANAIDALRILYKAGANPLHTDKDSLTALHCAATCGHTSCIRMLI--ELYGCSIESEDINGCTPLFYAITLEHSNACRVLLDLKANSNHKDNRGRTPSHCAALKGNINCLKHLIE 296          
BLAST of mRNA_E_fasciculatus_S2_contig920.17264.1 vs.
Match: Hypothetical (protein n=4 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821BSN6_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 3.080e-10
Identity = 78/313 (24.92%), Postives = 133/313 (42.49%), Query Frame = 3
Query:  123 VIEACVEGNTERLTSLVDSAVNPRQLVNKREEQGFTALHIAVMMGAAGCARKLLDV-GADPKARTPEGATPIVMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDEVVGTVPMHTAIYSGRLGVFKTLLAGPGGEVAVNTKDTQGATPLHIACRAKGAAGPVAAMTLLEEGCPVVVDFSVRDDSGRTPLYDAVHHGHAEVVKLLLAAGSDPSLQDSTGLSPLGATAWLGKEACLDAILGTESGLATLELANNLGATPLIFACQENNESIAQKLIAAGASLDAKDLTGQTPYIIAKAQKASACVKLLTE 1058
            + EAC + + E++  L++   N    +N+  EQG TALH         CAR LL+   +    +  EG + + +A               G               T  D  + ++ +H     G L +F  L+     E  V+T D  GA P+H A +  G   P  ++ +L++     VD +  D+  RTP   A      + +++L  AG++P   D   L+ L   A  G  +C+  ++  E    ++E  +  G TPL +A    + +  + L+   A+ + KD  G+TP   A  +    C+K L E
Sbjct:    6 LFEACQKVDIEQIKYLIEQKYN----INQLNEQGRTALHYCCDHQNIDCARLLLEYDNSIINIKDNEGFSALHLACLN------------GNYIMVKYFCEQGADVTLVDNELHSL-IHWITVCGHLDLFDILVQY---EAPVHTSDIYGAFPIHYASQLCGNNDPAKSLAILKKLIDNNVDVNCLDEQKRTPFIWAASANAIDALRILYKAGANPLHTDKDSLTALHCAATCGHTSCIRMLI--ELYGCSIESEDINGCTPLFYAITLEHSNACRVLLDLKANSNHKDNRGRTPSHCAALKGNINCLKHLIE 296          
BLAST of mRNA_E_fasciculatus_S2_contig920.17264.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HWH9_9HYME)

HSP 1 Score: 75.1 bits (183), Expect = 4.140e-10
Identity = 88/311 (28.30%), Postives = 129/311 (41.48%), Query Frame = 3
Query:  132 ACVEGNTERLTSLVDSAVNPRQLVNKREEQGFTALHIAVMMGAAGCAR---KLLDVGADPKARTPEGATPIVMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDEVVGTVPMHTAIYSGR-LGVFKTLLAGPGGEVAVNTKDTQGATPLHIACRAKGAAGPVAAMTLLEEGCPVVVDF------SVRDDSGRTPLYDAVHHGHAEVVKLLLAAGSDPSLQDSTGLSPL-GATAWLGKEACLDA---ILGTESGLATLELANNLGATPLIFACQENNESIAQKLIAAGASLDAKDLTGQTP-YIIAK 1019
            AC  G  +     ++   +P  LV    E G + LH+   +      +   +LL  GADP     +G+TP+ +  +        +++                 Q ER    G  P+H A+  G  +G    LL         N  +  G+T LH+ CR     G      LLE     V DF      + +D  G TPL+ AV H H E V+LLL  GSDPSL ++ G +PL G     GK   L     I   +S    L + +N G TPL  A    N  + + L+  G   +  +  G TP ++IA+
Sbjct:  804 ACKYGLDDVAEKFLELGQDPNCLV---PETGDSTLHLVATINFEYFEKSIIRLLKHGADPNQSNEDGSTPLHVICRNDKYYSYHKIRRLFEVIDDFQQTVLIDAQDER----GDTPLHLALKDGNDVGTVDELLRRGANP---NLANEDGSTSLHVICR-NNKYGYYMIQRLLES----VEDFQQTALINAQDKRGDTPLHLAVKHCHDEEVELLLRRGSDPSLANAQGQTPLHGVCRSNGKYYMLPLFFDICDEKSHPVLLNVRDNEGNTPLHLAISCGNAEMIESLLRRGTDPNLPNAKGLTPLHLIAR 1099          
BLAST of mRNA_E_fasciculatus_S2_contig920.17264.1 vs.
Match: Hypothetical (protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A818QJB4_9BILA)

HSP 1 Score: 73.6 bits (179), Expect = 4.270e-10
Identity = 77/315 (24.44%), Postives = 134/315 (42.54%), Query Frame = 3
Query:  123 VIEACVEGNTERLTSLVDSAVNPRQLVNKREEQGFTALHIAVMMGAAGCARKLLDVGADP-KARTPEGATPIVMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDEVVGTVPMHTAIYSGRLGVFKTLLAGPGGEVAVNTKDTQGATPLHIACRAKGAAGPVAAMTLLEEGCPVVVDFSVRDDSGRTPLYDAVHHGHAEVVKLLLAAGSDPSLQDSTGLSPLGATAWLGKEACLDAILGTESGLATLELANNLGATPLIFACQENNESIAQKLIAAGASLDAKDLTGQTPYIIAKAQKASACVKLLTEEH 1064
            + EAC + + E++  L++   N    +NK  EQG TALH         CAR LL+        +  EG + + +A               G               T  D  + ++ +H     G + +F  L+     +  ++T D  GA P+H A +  G   P+  +T+L++      D +  D+  RTP   A      + +++L  AG++P   D   L+ L   A  G  +C+  ++  E    +LE  +  G TPL +A    + ++ + L+   A+ + KD  G+TP   A  +    C+K L E +
Sbjct:    3 LFEACQKVDIEQVKYLIEQNFN----INKLNEQGRTALHYCCDHENIDCARLLLENDKSIINIKDNEGFSALHLACLN------------GNLIMVKYFCEQGADVTLVDNELHSL-IHWITVCGHVDLFDILVQY---QTPIHTSDIYGAFPIHYASQLCGNNDPIKNLTILKKLIDNNADVNCLDEQKRTPFIWAASANAIDALRILYKAGANPLHADKDSLTALHCAATCGHLSCIRMLI--ELYGCSLESEDINGCTPLYYAITFEHLNVCRVLLHLKANPNHKDHRGRTPSHCAALKGNINCLKCLIEHN 295          
BLAST of mRNA_E_fasciculatus_S2_contig920.17264.1 vs.
Match: ankyrin-1-like (n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C71A4EA)

HSP 1 Score: 73.9 bits (180), Expect = 8.650e-10
Identity = 76/284 (26.76%), Postives = 122/284 (42.96%), Query Frame = 3
Query:  144 GNTERLTSLVDSAVNPRQLVNKREEQGFTALHIAVMMGAAGCARKLLDVGADPKARTPEGATPIVMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDEVVGTVPMHTAIYSGRLGVFKTLLAGPGGEVAVNTKDTQGATPLHIACRAKGAAGPVAAM---TLLEEGCPVVVDFSVRDDSGRTPLYDAVHHGHAEVVKLLLAAGSDPSLQDSTGLSPLGATAWLGKEACLDAI---LGTE-SGLATLELANNLGATPLIFACQENNESIAQKLIAAGASL 974
            G  + L S++  A++ R LVN R+ +G T LH+A+  G    A  LL+ GADP      G TP+ +          P+ ++                Q    +       H A         KTLL        VN     G T LH+ C+       +  +   T+ +    V +D   RD+ G TPL+ AV  GH +++ LLL  G+DP++ + + ++PL       ++  L  +   +  E S L  +++ + LG TPL +A      +I   L+  GA L
Sbjct:  472 GLEDDLASILLRAISIRHLVNYRDNEGNTPLHLALFRGHTRVAASLLESGADPNLANNLGQTPLHVVCN------RPD-RDSARIFLNASEAVNRAVQVNVQDRXXXXXXHLAAECSNARAIKTLLRRGARPNLVNR---HGLTTLHVICKRDCDDDDLLKIFFKTINKIHATVQID--ARDNLGETPLHVAVSLGHKKLINLLLRYGADPNMANKSKVTPLHIICKRDRDDGLVKMFFDVNEELSQLVLVDVQDKLGRTPLQWAVANLWPNIIDVLLDHGADL 743          
BLAST of mRNA_E_fasciculatus_S2_contig920.17264.1 vs.
Match: Hypothetical (protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819CPQ1_9BILA)

HSP 1 Score: 73.6 bits (179), Expect = 1.090e-9
Identity = 77/313 (24.60%), Postives = 132/313 (42.17%), Query Frame = 3
Query:  123 VIEACVEGNTERLTSLVDSAVNPRQLVNKREEQGFTALHIAVMMGAAGCARKLLDV-GADPKARTPEGATPIVMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDEVVGTVPMHTAIYSGRLGVFKTLLAGPGGEVAVNTKDTQGATPLHIACRAKGAAGPVAAMTLLEEGCPVVVDFSVRDDSGRTPLYDAVHHGHAEVVKLLLAAGSDPSLQDSTGLSPLGATAWLGKEACLDAILGTESGLATLELANNLGATPLIFACQENNESIAQKLIAAGASLDAKDLTGQTPYIIAKAQKASACVKLLTE 1058
            + EAC + + E++  L++   N    +N+  EQG TALH         CAR LL+   +    +  EG + + +A               G               T  D  + ++ +H     G L +F  L+     E  V+T D  GA P+H A +  G   P  ++ +L++      D +  D+  RTP   A      + +++L  AG++P   D   L+ L   A  G  +C+  ++  E    ++E  +  G TPL +A    + +  + L+   A+ + KD  G+TP   A  +    C+K L E
Sbjct:    6 LFEACQKVDIEQIKYLIEQKYN----INQLNEQGRTALHYCCDHQNIDCARLLLEYDNSIINIKDNEGFSALHLACLN------------GNYIMVKYFCEQGADVTLVDNELHSL-IHWITVCGHLDLFDILVQY---EAPVHTSDIYGAFPIHYASQLCGNNDPAKSLAILKKLIDNNADVNCLDEQKRTPFIWAASANAIDALRILYKAGANPLHTDKDSLTALHCAATCGHTSCIRMLI--ELYGCSIESEDINGCTPLFYAITLEHSNACRVLLDLKANSNHKDNRGRTPSHCAALKGNINCLKHLIE 296          
BLAST of mRNA_E_fasciculatus_S2_contig920.17264.1 vs.
Match: Hypothetical (protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A816A672_9BILA)

HSP 1 Score: 73.6 bits (179), Expect = 1.220e-9
Identity = 77/313 (24.60%), Postives = 132/313 (42.17%), Query Frame = 3
Query:  123 VIEACVEGNTERLTSLVDSAVNPRQLVNKREEQGFTALHIAVMMGAAGCARKLLDV-GADPKARTPEGATPIVMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDEVVGTVPMHTAIYSGRLGVFKTLLAGPGGEVAVNTKDTQGATPLHIACRAKGAAGPVAAMTLLEEGCPVVVDFSVRDDSGRTPLYDAVHHGHAEVVKLLLAAGSDPSLQDSTGLSPLGATAWLGKEACLDAILGTESGLATLELANNLGATPLIFACQENNESIAQKLIAAGASLDAKDLTGQTPYIIAKAQKASACVKLLTE 1058
            + EAC + + E++  L++   N    +N+  EQG TALH         CAR LL+   +    +  EG + + +A               G               T  D  + ++ +H     G L +F  L+     E  V+T D  GA P+H A +  G   P  ++ +L++      D +  D+  RTP   A      + +++L  AG++P   D   L+ L   A  G  +C+  ++  E    ++E  +  G TPL +A    + +  + L+   A+ + KD  G+TP   A  +    C+K L E
Sbjct:    6 LFEACQKVDIEQIKYLIEQKYN----INQLNEQGRTALHYCCDHQNIDCARLLLEYDNSIINIKDNEGFSALHLACLN------------GNYIMVKYFCEQGADVTLVDNELHSL-IHWITVCGHLDLFDILVQY---EAPVHTSDIYGAFPIHYASQLCGNNDPAKSLAILKKLIDNNADVNCLDEQKRTPFIWAASANAIDALRILYKAGANPLHTDKDSLTALHCAATCGHTSCIRMLI--ELYGCSIESEDINGCTPLFYAITLEHSNACRVLLDLKANSNHKDNRGRTPSHCAALKGNINCLKHLIE 296          
BLAST of mRNA_E_fasciculatus_S2_contig920.17264.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gibberella fujikuroi TaxID=5127 RepID=A0A0I9XCG9_GIBFU)

HSP 1 Score: 71.6 bits (174), Expect = 1.720e-9
Identity = 58/177 (32.77%), Postives = 81/177 (45.76%), Query Frame = 3
Query:  459 GTVPMHTAIYSGRLGVFKTLLAGPGGEVAVNTKDTQGATPLHIACRAKGAAGPVAAMTLLEEGCPVVVDFSVRDDSGRTPLYDAVHHGHAEVVKLLLAAGSDPSLQDSTGLSPLGATAWLGKE---ACLDAILGTESGLATLELANNLGATPLIFACQENNESIAQKLIAAGASLDA 980
            G  P+H AI        + L+A    +  VN +   G TPL IA     A G    +  L E        S  +  G T L+ AV  G    V LLL AG+  S  D  G +P+   AW+ +E      D +   +   A +E  +NLG+TP+++ACQ  N  +   L+ AGASL A
Sbjct:   42 GQAPIHVAISENNFLGLEQLMAA---KADVNRQTLSGYTPLMIAA----ANGNNTMIQKLLEHSECKKRISQGNAQGVTALHFAVESGSLACVSLLLEAGAPASKTDDYGRTPMANLAWVNQEHQQEIYDTLKLLQDYGADIESKDNLGSTPVLWACQRGNVPVLGALVRAGASLGA 211          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig920.17264.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.780e-19388.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.990e-3484.52protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical1.400e-1024.92protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511... [more]
Hypothetical3.080e-1024.92protein n=4 Tax=Rotaria sp. Silwood1 TaxID=2762511... [more]
Uncharacterized4.140e-1028.30protein n=1 Tax=Trichogramma brassicae TaxID=86971... [more]
Hypothetical4.270e-1024.44protein n=3 Tax=Rotaria sordida TaxID=392033 RepID... [more]
ankyrin-1-like8.650e-1026.76n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UP... [more]
Hypothetical1.090e-924.60protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511... [more]
Hypothetical1.220e-924.60protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511... [more]
Uncharacterized1.720e-932.77protein n=1 Tax=Gibberella fujikuroi TaxID=5127 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig920contigE_fasciculatus_S2_contig920:8418..13240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score565.5
Seed ortholog evalue2e-158
Seed eggNOG ortholog2880.D7G0H8
Model size2289
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-20_002370.1
Cds size1212
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig920.17264.1prot_E_fasciculatus_S2_contig920.17264.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig920 9382..12099 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842570.7328749-UTR-E_fasciculatus_S2_contig920:8417..93811696842570.7328749-UTR-E_fasciculatus_S2_contig920:8417..9381Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig920 8418..9381 -
1696842570.8228393-UTR-E_fasciculatus_S2_contig920:12099..121311696842570.8228393-UTR-E_fasciculatus_S2_contig920:12099..12131Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig920 12100..12131 -
1696842570.8329842-UTR-E_fasciculatus_S2_contig920:13159..132401696842570.8329842-UTR-E_fasciculatus_S2_contig920:13159..13240Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig920 13160..13240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842570.747551-CDS-E_fasciculatus_S2_contig920:9381..97181696842570.747551-CDS-E_fasciculatus_S2_contig920:9381..9718Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig920 9382..9718 -
1696842570.7606258-CDS-E_fasciculatus_S2_contig920:10248..104961696842570.7606258-CDS-E_fasciculatus_S2_contig920:10248..10496Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig920 10249..10496 -
1696842570.7734978-CDS-E_fasciculatus_S2_contig920:10868..111561696842570.7734978-CDS-E_fasciculatus_S2_contig920:10868..11156Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig920 10869..11156 -
1696842570.7938673-CDS-E_fasciculatus_S2_contig920:11481..116551696842570.7938673-CDS-E_fasciculatus_S2_contig920:11481..11655Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig920 11482..11655 -
1696842570.8115087-CDS-E_fasciculatus_S2_contig920:11934..120991696842570.8115087-CDS-E_fasciculatus_S2_contig920:11934..12099Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig920 11935..12099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig920.17264.1

>prot_E_fasciculatus_S2_contig920.17264.1 ID=prot_E_fasciculatus_S2_contig920.17264.1|Name=mRNA_E_fasciculatus_S2_contig920.17264.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=404bp
MQRVIEACVEGNTERLTSLVDSAVNPRQLVNKREEQGFTALHIAVMMGAA
GCARKLLDVGADPKARTPEGATPIVMAAQGTGQPGAPELQEGGAAKCVQF
LLDAGADQTERDEVVGTVPMHTAIYSGRLGVFKTLLAGPGGEVAVNTKDT
QGATPLHIACRAKGAAGPVAAMTLLEEGCPVVVDFSVRDDSGRTPLYDAV
HHGHAEVVKLLLAAGSDPSLQDSTGLSPLGATAWLGKEACLDAILGTESG
LATLELANNLGATPLIFACQENNESIAQKLIAAGASLDAKDLTGQTPYII
AKAQKASACVKLLTEEHGRPSREEESFNFAASSMITNLGGGTLMGMSGGG
VNISTTKDKETDGDVHVSMTKDKKTGHMSISMSTEKETKSGGTGTAAAPA
PES*
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mRNA from alignment at E_fasciculatus_S2_contig920:8418..13240-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig920.17264.1 ID=mRNA_E_fasciculatus_S2_contig920.17264.1|Name=mRNA_E_fasciculatus_S2_contig920.17264.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4823bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig920:8418..13240- (Ectocarpus fasciculatus EfasUO2)
CACACGGACACACCACGGCACGGACAGCACCGCAACAGCAGCAGGAGAAA CCACTACAGCAGGAGCGAGGAAACGCGACAGGTGTGTGTATCTATTGCGT GTGGAAGATATGTGTTTCACAGTAAAAAGTTTCCAAAACACGACTTGAGA CAGCAGGTCCGATGGTCTGACAACGCCGGACGAAGAGTTTGCATACCGCT CGCTACATGTCAAAGGGGTGGCTACCAGTCGTTGGTGTACTTCCTTTTTT TTTGTATTTAGCTACATGACCCAACAAATCCATCTCTGTCCATAGGTAAG GGTCTACGATTGGTCGTGAATGCATAGCGTTGCAAGATGTACCTGTTCTG TGTTTCTATGCATTACGATCCCCCAAGAAGCGTACCGCGATTTTTCCTCC AAAGATATCTTACAGCAGTATGCATACAGCAAGTGGGGGGGGCTGTTTAG TGCCCGGTGCCCGGTATGACCCCGGTGTTTTCGGCGGGCACGCACTAAAT TTTCAAGTCGTTCTCAATACTCTAATAGTACCGGTCCGGCAGTCGGGCAA TGCAGGTGAATTTGGGCATATACCGACACTACACAGGGACCTCTAATGTT GTACTGCGAATAATCTGTGTGTTTGTTCCCCCGCCAATTCGATTGCTGCT CCGCACGTTTTGCTCGTGCGTTGTTTCGTTGATTCACCATCAATCTGGTT GTGTGTCCCCATGAGCCCTCACACACCTGCCCCTTCGGCAACACAGGTGT ATTATTTGTGTGCATTGCTGCTGTTCTCGTGCGCGTGTGCTATGGTAGGA AGGAACGATTGGCCGTCGGTGATCAGTCCTGTGGGAACAGTGCTCCGTCC TCTCGAAGGCATGCAATGCATGAGTGCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCTCCCCCCCCCACCGCCCCCGCCCCACGAGCGCGAAAACACACAC CCACAACCACACCCAAAAAAAACACACGATCTCCTTCTTTAGTTCTAAAA NNNNNNNNNNGTTCTGCATCCTTTGGGAAAAGGGCCCTCTCTCCCCGAAG GGATTCAAAACCCAGGGGCCCCCCCCCCCCCCCCCTGCCTCTTTCCATCA CGCACGCAGGCCGACTGCTGTACCCACCGCACAGCTGCAACATGCAGAGG GTGATTGAAGCATGCGTGGAAGGCAACACCGAGAGGCTGACCTCCCTCGT CGACAGCGCGGTGAATCCGCGGCAGTTGGTGAACAAGAGAGAGGAGCAAG GGTTTACTGCCCTTCACATCGCCGTGATGATGGGCGCGGCGGGTTGTGCC AGAAAAGTGAGGATTTATGGTCTTCCCTTCGCTCTCCCCACTGGCACACG CTTTTCGCCTAAAGTTTGTCTACCCTGGAACATTGTTTATATTGAGCACC CCCAATGTCCCGGCCTTTTTCAGGTCGCGCGGAGCTCGCTTGGCCCCTCT GAGCTTTACCTAGGGCCATGCATGGCTGCAACTCCTCCCACCGTGTCGTT GCCGCTTCCGTTGCCAACTCTTTACACCTCTCTTTCTCGTTCGTGTATTT TTCACCGCCGCCCCGGACCCCCTGGCGACAACCAGCTCCTCGACGTTGGC GCAGACCCCAAAGCTCGCACGCCGGAAGGTGCCACCCCGATCGTCATGGC TGCCCAGGGAACCGGGCAACCGGGCGCCCCCGAGCTGCAGGAGGGCGGCG CCGCCAAGTGCGTCCAGTTTCTGCTGGACGCCGGCGCGGATCAAACCGAG AGGGACGAGGTGAGTCCGGCCGGCGTGCCGCGGTCGTTTCCCGACACTTT TAGCAGCGGGAGAGAGTGCAAAGGGACTGCTGTGCTTGTTCTTCAAGCCT CTCTAGGTCCACCACTGGCCACTGTTCACGCCCGGTTCGTCTCAGGTAAG AAGGAGCACGACGACCCCTTCTCTCGCTGAGTCGCGCCTCCAACACCACC ATCGGTTATTAATGAGGGTTTCATCCCTCAAAATATGTACTCCGTGATAA TGGTTTTTTGCGGTGAACAAGAAACTAAATGGGGCCATTTGTCTTCATTT TGTCCTGGTCGTCATGGGGGGGGCGGGTGGCCAGGTGGTCGGCACGGTGC CGATGCACACGGCCATCTACTCAGGGCGGCTAGGGGTGTTCAAGACCCTG CTGGCCGGACCGGGCGGGGAGGTCGCCGTTAACACCAAGGATACTCAAGG CGCGACACCGCTCCATATCGCCTGCAGGGCAAAGGGTGCCGCTGGGCCCG TGGCCGCCATGACCCTGCTCGAGGAAGGCTGTCCGGTCGTGGTGGATTTC AGCGTTAGGGACGACTCCGGGAGGACGCCTCTGTACGACGCTGTTCACCA TGGTCACGCCGAGGTGGTCAAGGTGTGTGTGAGGAAGGAGCTTGGTGATG AACAAGCAGTAAGTGCGCAAGCGTAAGTGGATCACGCTGCCGGAGCGCGC GAGAAAACATGAGTGTGAGTTCAGCTTTGTGCTTCGTATTGTTATTGACA CCGGCCTCTTAAGGGAAAGAGGGAAAGTGATCCCGGCGACACGAAGGTTT TGGGCCGATAGTAACGGAGTAGAAAATGGCACACACTCCATGCACATCTC ACTTGGGGCATCGGGGTGGTTTCTAATGGTAACCTCGAAGCAAACGCTGT TGTGTGTACTGTGGCTCTCCCCCCGGGTGCTCAGGCTGGCCCACCTCTCG CAATCTTCGTGTTCCGTGCACCGTAAATGCCCATGCGCCGTCAGCTCCTT CTAGCTGCTGGGTCCGACCCATCTCTGCAAGACAGCACCGGTCTGAGCCC CCTTGGGGCGACGGCCTGGCTTGGCAAGGAGGCTTGCCTTGACGCCATTC TCGGCACCGAGAGCGGCCTGGCCACCCTCGAGCTGGCCAACAACCTGGGC GCCACGCCCCTCATCTTCGCCTGCCAGGAGAACAACGAGAGCATCGCGCA GAAGCTCATCGCCGCTGGGGCGAGCCTCGACGCGAAAGACTTGTGAGTTG TGTGTACTGCTTACTTCTCCCCGCCACCGGGTTGTGGGAGAATCGAGTGC ATGCGCTGTGTTGTGGTTTTTGTTTGGTTTTTCGGCAGAGGACTTGCTTG CCGTGTGGTGTTTGTGGACTTTCTTCGTACACTCTTTCACGCGTCTTCAG CGGGTGCGCGTACCGTGCGCGTTTGTTTCAACAAGATGGTTGTCTGACTC GTCGATATCGATCGTCCCCTCGGCGCTATTTCTTGCTGCTTGCTGTTGTT CTTGTTGCGCTACGAATCGACTGTGAAACCAGCTTGGGAGCTTGAAGGCT ACGGAATAGCGCGGGGAGACGGCATTTTGTTTTTCAAGTCTGTCACTGTT CGACCTCCAGCAGCACCTCTTGAGCGTTTCGTATTGCTGGAACGCTTCAT CTCTTGACGTACTTGCCAAAATATCGTTTGATGATGATCGGTCTACCAGT ACGCATGTGATGGCAATATTTGAGCACAAGGCCCTACCCCCTTCCCCCTC CCCAACTCCACCCCATCAATAGGACGGGCCAGACACCGTACATCATCGCC AAGGCCCAGAAAGCGTCGGCCTGCGTGAAGCTCCTCACCGAGGAGCACGG CCGCCCCAGCCGAGAGGAGGAGAGCTTCAACTTCGCTGCGTCTTCCATGA TCACCAACCTGGGAGGGGGCACCCTCATGGGCATGTCGGGTGGCGGCGTG AACATCTCCACGACGAAGGACAAGGAGACGGATGGTGACGTGCATGTCTC CATGACGAAGGACAAGAAGACGGGCCACATGAGCATCTCCATGTCGACGG AAAAGGAGACTAAATCCGGCGGAACCGGCACTGCTGCTGCGCCTGCTCCT GAGTCGTAACGCGGCGCCTTGCACCGGGCGGGGGGAGCACGCGATTTGTG TTTTCTGTGGTGCCAATGAACCCGAATGGCTACTGGTTCTAGCCCTTGTT TCTCCCGGTCCTTGTTCTCCCGTGTCTGGTGTATGCGACATGGTCGTTTT TTTCGTTCCTCTGGTCGTTCCTATTTCTGTAGAGTGAAGGAATGCGGCAG GGTGAGTTCTGAATAATATCAGGATAGATAGATATGCTCTTCTTGCCGGA ATCTGCTCCGGCTGTTCATTTTTAGATTAGATACATGGTACATGCCATCA AGGAAGTACTACCCTTTCGAGATAATACTGCAGACGAGGGGATGTGTTGT AGTCTTTGAAGTGAATTTTTCTTAGTTTTCTGCGGGGTCAACTTGCGAAG AGGGCCGTGTTGCGCTCCTCCAGGATACAGCGCGGATTGATCGGGGATCC GTTCCATTTTTTCCCGGTGGCAACGGAAACCAAGAGTGGATTCCAAAGGT CCGGGATCAGACCTTCCTCCATCACGTAGGTGGGCATGGTCCATGTCGTA TGCGAAGCTTGCTGGCTCGCCCTATTTGTTGTGTCGCAGAATGCCTTGAC TTGGTGTCTTGGTGTTGCACGTATCGCACATGTTGCGCATGTCGCGCATG CATGCGTGTATCAATGCCTCAGGTCTCAGATACAACCACCAGCCTTTTAT ACGCCACAATGTCGAAAAACTGCTGTAGTTTGTTTGACGACTAGCGCAGA GCAAGTTGTGTCTTGCTGGCTTGAGTTGGTCTTTTTAGGCAGGAGTACAC GCACAGCACATGGGCAGGACCCGGTAAAGGTATGCACATGACGACACAGC AGGCAGTGAGCGCCACCCTCCCTCGAAGGCACACGACACAGTAGCAGCAG CAGTGCTGAACAACATTTGGGGTATTGACGGGTACCGACGGGTACAGACA ATACTCCGCACCGACCGCCGCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig920:8418..13240-

>mRNA_E_fasciculatus_S2_contig920.17264.1 ID=mRNA_E_fasciculatus_S2_contig920.17264.1|Name=mRNA_E_fasciculatus_S2_contig920.17264.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1212bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig920:8418..13240- (Ectocarpus fasciculatus EfasUO2)
ATGCAGAGGGTGATTGAAGCATGCGTGGAAGGCAACACCGAGAGGCTGAC
CTCCCTCGTCGACAGCGCGGTGAATCCGCGGCAGTTGGTGAACAAGAGAG
AGGAGCAAGGGTTTACTGCCCTTCACATCGCCGTGATGATGGGCGCGGCG
GGTTGTGCCAGAAAACTCCTCGACGTTGGCGCAGACCCCAAAGCTCGCAC
GCCGGAAGGTGCCACCCCGATCGTCATGGCTGCCCAGGGAACCGGGCAAC
CGGGCGCCCCCGAGCTGCAGGAGGGCGGCGCCGCCAAGTGCGTCCAGTTT
CTGCTGGACGCCGGCGCGGATCAAACCGAGAGGGACGAGGTGGTCGGCAC
GGTGCCGATGCACACGGCCATCTACTCAGGGCGGCTAGGGGTGTTCAAGA
CCCTGCTGGCCGGACCGGGCGGGGAGGTCGCCGTTAACACCAAGGATACT
CAAGGCGCGACACCGCTCCATATCGCCTGCAGGGCAAAGGGTGCCGCTGG
GCCCGTGGCCGCCATGACCCTGCTCGAGGAAGGCTGTCCGGTCGTGGTGG
ATTTCAGCGTTAGGGACGACTCCGGGAGGACGCCTCTGTACGACGCTGTT
CACCATGGTCACGCCGAGGTGGTCAAGCTCCTTCTAGCTGCTGGGTCCGA
CCCATCTCTGCAAGACAGCACCGGTCTGAGCCCCCTTGGGGCGACGGCCT
GGCTTGGCAAGGAGGCTTGCCTTGACGCCATTCTCGGCACCGAGAGCGGC
CTGGCCACCCTCGAGCTGGCCAACAACCTGGGCGCCACGCCCCTCATCTT
CGCCTGCCAGGAGAACAACGAGAGCATCGCGCAGAAGCTCATCGCCGCTG
GGGCGAGCCTCGACGCGAAAGACTTGACGGGCCAGACACCGTACATCATC
GCCAAGGCCCAGAAAGCGTCGGCCTGCGTGAAGCTCCTCACCGAGGAGCA
CGGCCGCCCCAGCCGAGAGGAGGAGAGCTTCAACTTCGCTGCGTCTTCCA
TGATCACCAACCTGGGAGGGGGCACCCTCATGGGCATGTCGGGTGGCGGC
GTGAACATCTCCACGACGAAGGACAAGGAGACGGATGGTGACGTGCATGT
CTCCATGACGAAGGACAAGAAGACGGGCCACATGAGCATCTCCATGTCGA
CGGAAAAGGAGACTAAATCCGGCGGAACCGGCACTGCTGCTGCGCCTGCT
CCTGAGTCGTAA
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