prot_E_fasciculatus_S2_contig912.17196.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig912.17196.1
Unique Nameprot_E_fasciculatus_S2_contig912.17196.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length968
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig912.17196.1 vs. uniprot
Match: D8LLH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH6_ECTSI)

HSP 1 Score: 833 bits (2152), Expect = 3.410e-289
Identity = 582/984 (59.15%), Postives = 611/984 (62.09%), Query Frame = 0 
Query:    1 SDGKRKRARDDDGDGVAEAGANGGSGGAASQGADSLSSYSLMGVADENDGKDAAGGASKVDAEAAVADGATPSSAVGDAGAGADASAAGDDDEV-VEIPPPSAAQAVIEVSEEADCGSGGFNSAAPGTAAEPISIESGEAPQKK---RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQRPSKKARKSASAXXKGSDGGSEGGSDDXXXXXXXXXXXXXXXXXXXX----LEGPILFTVGQPMSKDMTKMAKGRLSKWALKFTGTRTYAPPAVPVIEPINDDYLASFGRSYAEAKSLTAQDKKEKAATQGXXXXXXXXXXGQAGDENXXXXXXXXXXXXGPSDNKANGAGNADAAEGAAAKDEGSASPTKKNSRSGRRKKHGVFVVNLLYMLCDEKKLETLFSAFGQVTAVVLTRPPEGKTVSGSASVYFATAEGAQKALDADGMAIRGRPVGIREARLNVDKRYFVEPEQAAKVPNTAKNPLAEAICTLCGAIGHEDKNCPFNACSRCWEEGHLADACPYVDVMQEAPGSXXXXXXXXXXXXXXXXTAPNGKSQLKFSCMTCRDDGHTQCGRETNLVFGNERGVAMTCCNCGLASHDRRFCPHQTEAEILRECGYRFNRCVSGGHRRKSTGGGGRNHMVCYNCGKKGHGKSECPLQRQTQTPGRFGTSNNYNRNDQPRVPAADWKQEWSASNNNTRSVNSQSQXXXXXXXXXXXXXXXXQHQHQPKQPTHLPSAYLNEHAHPPSPLQPTRRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHQQERDGTHNRYQDQMATPTDSPSSFPRWSDNAAVGNGGSGGGARNRAYHPGGNFXXXXXXXXXRRV-EDRHRSSGHRGERYSSSRXXGDGYXXXXXXXXXXXXXXXXXXGRSSGGRKGGYPSYPTPSHS--------YSHHSGGSHQRSPYNGGQPYSAGGQSYSAXXXXXXXXXXXXXXXRRGGGGRDSHANPRSYGY 967
            S GKRKRARDDD DGVAEA ANGGSGGAAS GADSLSSYSLMGVAD NDGKDAAGG SKV+ EAA ADGA  SSA G+AG+GADA AA       VEIPPPSAA AV+E+SEEADC SGGFNS  PGTAA PISIESGEAPQKK   R                              EQRPSKKARKSA AXX             XXXXXXXXXXXXXXXXXXXX    LEGP+LF VGQPMSK M KMAKGRLSKWALKFTGTRTYAPPAVPVIEPINDDYLASFGRSYAEAKSLTAQDKKE  ATQ     XXXXXX QAGDEN   X        GPS  + N     DAA   AAK EGS SPTKKNS  G RKKHGVFVVNLLY LCDE+KLE+LFSAFG+VTAVVLTRPPEG+ VSG ASVYF TAE AQKAL ADGM IRGR VGIRE RL+VDKRYFVEPEQAAK  N AK PL E  CTLCGAIGH+D            EEGHLADACPYVDVM+E P                  TA  GKSQLKFSC+TCRDDGHTQCG+ET LVFGNERG AMTCCNCGL  HD R CPHQTEAEILRECGYRFN                + +MVCYNCGK+GHGKSECP+ RQTQTPGRFGT +N                                                                                                               QHQQER GTHNRY+ QMA+PTDS SSFPRW DN AV NGGS  G  +RAYHPGGNF    XXXXX    EDRHRSSGHRGER                    XXXXXXXXX  SS G+KGGY SY    H         YSHHS GSHQ S Y+ GQPYS+GGQSYSA               RRGGG RD+HA+PRSYGY
Sbjct:   30 SGGKRKRARDDDIDGVAEAEANGGSGGAASPGADSLSSYSLMGVADGNDGKDAAGGVSKVEVEAAAADGAPSSSADGNAGSGADAPAADXXXXXXVEIPPPSAAPAVMELSEEADCDSGGFNSGPPGTAAAPISIESGEAPQKKSKGRISKKKQKAVAKELEAQQEDGDDGSGSVGSGEQRPSKKARKSAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDGLEGPVLFAVGQPMSKKMRKMAKGRLSKWALKFTGTRTYAPPAVPVIEPINDDYLASFGRSYAEAKSLTAQDKKENTATQDDDGDXXXXXXSQAGDENGGGXDKE-----GPSXXEKNSTAEKDAAGREAAKTEGSGSPTKKNSLRGGRKKHGVFVVNLLYTLCDEEKLESLFSAFGRVTAVVLTRPPEGQKVSGIASVYFDTAEEAQKALAADGMDIRGRCVGIREVRLSVDKRYFVEPEQAAKATNKAK-PLEETRCTLCGAIGHDD------------EEGHLADACPYVDVMEEGPEPYCSVCGKAGHSIDACETACKGKSQLKFSCITCRDDGHTQCGKETILVFGNERGHAMTCCNCGLERHDWRSCPHQTEAEILRECGYRFNSSAXXXXXXXXXXXXXKTYMVCYNCGKQGHGKSECPVPRQTQTPGRFGTHHN----------------------------------------------------------------------------------------------------------GGGYHQHQQERGGTHNRYEHQMASPTDSRSSFPRWGDNGAVSNGGSSSGTLHRAYHPGGNFGSDSXXXXXXXXXEDRHRSSGHRGERXXXX----------------XXXXXXXXXXXSSRGQKGGYHSYSRDQHQPAXXXXXXYSHHSSGSHQCSRYSSGQPYSSGGQSYSAG--------------RRGGGTRDAHASPRSYGY 859
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig912.17196.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLH6_ECTSI3.410e-28959.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 375..448
e-value: 7.5E-5
score: 32.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 376..445
e-value: 3.9E-9
score: 36.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 374..452
score: 12.748
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 525..541
e-value: 0.49
score: 13.1
coord: 581..597
e-value: 13.0
score: 4.3
coord: 633..649
e-value: 0.0033
score: 26.5
coord: 480..496
e-value: 1.1
score: 11.0
coord: 498..514
e-value: 0.15
score: 16.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 481..495
score: 8.532
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 634..648
score: 10.394
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 499..513
score: 8.515
NoneNo IPR availableGENE3D4.10.60.10coord: 496..551
e-value: 1.5E-7
score: 33.1
NoneNo IPR availableGENE3D4.10.60.10coord: 577..666
e-value: 2.4E-5
score: 26.4
NoneNo IPR availablePANTHERPTHR46978FAMILY NOT NAMEDcoord: 307..793
NoneNo IPR availablePANTHERPTHR46978:SF1ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEINcoord: 307..793
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 291..456
e-value: 4.8E-16
score: 61.1
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 616..652
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 472..514
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 319..450

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig912contigE_fasciculatus_S2_contig912:18237..25457 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig912.17196.1mRNA_E_fasciculatus_S2_contig912.17196.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig912 18237..25457 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig912.17196.1 ID=prot_E_fasciculatus_S2_contig912.17196.1|Name=mRNA_E_fasciculatus_S2_contig912.17196.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=968bp
SDGKRKRARDDDGDGVAEAGANGGSGGAASQGADSLSSYSLMGVADENDG
KDAAGGASKVDAEAAVADGATPSSAVGDAGAGADASAAGDDDEVVEIPPP
SAAQAVIEVSEEADCGSGGFNSAAPGTAAEPISIESGEAPQKKRKSKKKQ
KAAAKDLEAQHEDGGGGSGSAGSGEQRPSKKARKSASAKAKGSDGGSEGG
SDDDGSKGNGSDGDGGDSGEGDGLEGPILFTVGQPMSKDMTKMAKGRLSK
WALKFTGTRTYAPPAVPVIEPINDDYLASFGRSYAEAKSLTAQDKKEKAA
TQGNDDDDDDDDDGQAGDENDSGGDSSSGDEKGPSDNKANGAGNADAAEG
AAAKDEGSASPTKKNSRSGRRKKHGVFVVNLLYMLCDEKKLETLFSAFGQ
VTAVVLTRPPEGKTVSGSASVYFATAEGAQKALDADGMAIRGRPVGIREA
RLNVDKRYFVEPEQAAKVPNTAKNPLAEAICTLCGAIGHEDKNCPFNACS
RCWEEGHLADACPYVDVMQEAPGSYCSVCGKAGHSIDACKTAPNGKSQLK
FSCMTCRDDGHTQCGRETNLVFGNERGVAMTCCNCGLASHDRRFCPHQTE
AEILRECGYRFNRCVSGGHRRKSTGGGGRNHMVCYNCGKKGHGKSECPLQ
RQTQTPGRFGTSNNYNRNDQPRVPAADWKQEWSASNNNTRSVNSQSQNHG
SGKSRNDRMGSGQQHQHQPKQPTHLPSAYLNEHAHPPSPLQPTRRDGGAA
AFSGPPSPPYHHRNHNSHDNGGGYHQHQQERDGTHNRYQDQMATPTDSPS
SFPRWSDNAAVGNGGSGGGARNRAYHPGGNFGSDSSGGGGRRVEDRHRSS
GHRGERYSSSRGGGDGYSGGGGDRYSGGGGDRYSGGRSSGGRKGGYPSYP
TPSHSYSHHSGGSHQRSPYNGGQPYSAGGQSYSAGRQPYSAGGQSYSTGR
RGGGGRDSHANPRSYGY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR036875Znf_CCHC_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR001878Znf_CCHC
IPR000504RRM_dom