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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9039.17131.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS2_9PHAE) HSP 1 Score: 513 bits (1320), Expect = 3.810e-181 Identity = 274/329 (83.28%), Postives = 285/329 (86.63%), Query Frame = 1
Query: 1 MRNLALHTLAILGLGVMPLGRCDGFSAIPSVLKLSNPPSMIMLGKASSIHGVQRCGRQRAGWLLGREGSSFFPSKSFHYPPVAAQGSTPRRRTARMCLDFHTARAAAGSLGATAAAAVLRGGAMEQNVLSGVLGELANIRTPAALLGGAALRTMFFQPKPDANKRLHLLYTLLSTSAFSLQLVCVLCSTLTYTSIASRPEAMAISAISYLSEQMQWEFFVIRGSFVYGLFSFLAALACRAWLTFYEGKERGTAWIIMGVLASSAIFLLNFIHYTHNSLTLCLGGMTKALISLTLRNMYATKKRFFRHVIAAFAIWGVVKLLKLGPSGGA 987
MRNLA HTLAILGLGVMPLGRCDGFSAI +VLKLSNPPS+IMLGK S I GV RC RQ W+ G G PVAAQ STPRR TAR+C+ HTARAAAGSLG AAAAVLRGGAME NV++GVLGELANIRTPAALLGGAAL TMFFQPK DAN+RLHLLYTLLSTSAFSLQLVCVLCSTLTYTSIASRPEA+AISAISYLSEQMQWEFFVIRGSFVYGLFSFLAAL CR WLTFYE KERG AW+IM VLASSAIFLLNFIHYTHNSLTLCLGGMTKALISLTLRNMYATKKRF RHV+AAF IWG VKLLKL PS GA
Sbjct: 1 MRNLAFHTLAILGLGVMPLGRCDGFSAISTVLKLSNPPSIIMLGKTSIIQGVPRCRRQ---WVRGLPGCE---------APVAAQDSTPRRCTARVCMGSHTARAAAGSLGTAAAAAVLRGGAMEHNVIAGVLGELANIRTPAALLGGAALGTMFFQPKADANRRLHLLYTLLSTSAFSLQLVCVLCSTLTYTSIASRPEAIAISAISYLSEQMQWEFFVIRGSFVYGLFSFLAALVCRGWLTFYEEKERGPAWVIMAVLASSAIFLLNFIHYTHNSLTLCLGGMTKALISLTLRNMYATKKRFIRHVLAAFGIWGAVKLLKLEPSAGA 317
BLAST of mRNA_E_fasciculatus_S2_contig9039.17131.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G367_ECTSI) HSP 1 Score: 494 bits (1271), Expect = 5.480e-173 Identity = 277/362 (76.52%), Postives = 287/362 (79.28%), Query Frame = 1
Query: 1 MRNLALHTLAILGLGVMPLGRCDGFSAIPSVLKLSNPPSMIMLGKASSIHGVQRCGRQRAGWLLG-REGSSFFPSKSFHYPP-VAAQGSTPRRRTARMCLDFHTARAAAGS----------------------LGATAAAAVLRGGAM---------EQNVLSGVLGELANIRTPAALLGGAALRTMFFQPKPDANKRLHLLYTLLSTSAFSLQLVCVLCSTLTYTSIASRPEAMAISAISYLSEQMQWEFFVIRGSFVYGLFSFLAALACRAWLTFYEGKERGTAWIIMGVLASSAIFLLNFIHYTHNSLTLCLGGMTKALISLTLRNMYATKKRFFRHVIAAFAIWGVVKLLKLGPSGGA 987
MR+LALHTLAILGLGVMPLGRCDGFSAI SVLKLSNPPSMIMLGK S+I GV RC RQRAG L G EGSSFFPS SF YPP VAA STP+ T RMCL H A + +G + VL G A+ E NV+SGVLGELANIRTPAALLGGAAL TMF QPKPDANKRLHLLYTLLSTSAFSLQLVCVLCSTLTYTSIASRPEAMAISAISYLSEQMQWEFFVIRGSFVYGLFSFLAALACR WLTFYE KERG AW+IM VLASSAIFLLNFIHYT NSLTLCLGGMTKALISLTLRNMY TKKRFFRHV+AAF IWG VKLLKLGPS GA
Sbjct: 1 MRSLALHTLAILGLGVMPLGRCDGFSAISSVLKLSNPPSMIMLGKTSTIQGVPRCRRQRAGGLPGCEEGSSFFPSTSFPYPPAVAAPDSTPQSCTTRMCLGSHNAVGMQDTRAWSVCSIPRALWYCRGLVYVGMGNVPSLDVLFGRAITTQISRHPDEHNVISGVLGELANIRTPAALLGGAALGTMFLQPKPDANKRLHLLYTLLSTSAFSLQLVCVLCSTLTYTSIASRPEAMAISAISYLSEQMQWEFFVIRGSFVYGLFSFLAALACRGWLTFYEEKERGPAWVIMAVLASSAIFLLNFIHYTQNSLTLCLGGMTKALISLTLRNMYDTKKRFFRHVLAAFGIWGAVKLLKLGPSKGA 362
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 988 |
| Hectar predicted targeting category | signal peptide |
| Exons | 7 |
| Ec32 ortholog description | Calcium release-activated calcium channel protein |
| Ec32 ortholog | Ec-03_004710.1 |
| Cds size | 987 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842558.021123-CDS-E_fasciculatus_S2_contig9039:1272..1579 | 1696842558.021123-CDS-E_fasciculatus_S2_contig9039:1272..1579 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9039 1273..1579 + |
| 1696842558.0360048-CDS-E_fasciculatus_S2_contig9039:3322..3388 | 1696842558.0360048-CDS-E_fasciculatus_S2_contig9039:3322..3388 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9039 3323..3388 + |
| 1696842558.0480487-CDS-E_fasciculatus_S2_contig9039:4028..4222 | 1696842558.0480487-CDS-E_fasciculatus_S2_contig9039:4028..4222 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9039 4029..4222 + |
| 1696842558.0670602-CDS-E_fasciculatus_S2_contig9039:4616..4720 | 1696842558.0670602-CDS-E_fasciculatus_S2_contig9039:4616..4720 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9039 4617..4720 + |
| 1696842558.0779881-CDS-E_fasciculatus_S2_contig9039:5227..5289 | 1696842558.0779881-CDS-E_fasciculatus_S2_contig9039:5227..5289 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9039 5228..5289 + |
| 1696842558.0889726-CDS-E_fasciculatus_S2_contig9039:5846..5939 | 1696842558.0889726-CDS-E_fasciculatus_S2_contig9039:5846..5939 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9039 5847..5939 + |
| 1696842558.1007216-CDS-E_fasciculatus_S2_contig9039:6116..6277 | 1696842558.1007216-CDS-E_fasciculatus_S2_contig9039:6116..6277 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9039 6117..6277 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9039.17131.1 >prot_E_fasciculatus_S2_contig9039.17131.1 ID=prot_E_fasciculatus_S2_contig9039.17131.1|Name=mRNA_E_fasciculatus_S2_contig9039.17131.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=329bp
MRNLALHTLAILGLGVMPLGRCDGFSAIPSVLKLSNPPSMIMLGKASSIH GVQRCGRQRAGWLLGREGSSFFPSKSFHYPPVAAQGSTPRRRTARMCLDF HTARAAAGSLGATAAAAVLRGGAMEQNVLSGVLGELANIRTPAALLGGAA LRTMFFQPKPDANKRLHLLYTLLSTSAFSLQLVCVLCSTLTYTSIASRPE AMAISAISYLSEQMQWEFFVIRGSFVYGLFSFLAALACRAWLTFYEGKER GTAWIIMGVLASSAIFLLNFIHYTHNSLTLCLGGMTKALISLTLRNMYAT KKRFFRHVIAAFAIWGVVKLLKLGPSGGA back to topmRNA from alignment at E_fasciculatus_S2_contig9039:1273..6277+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig9039.17131.1 ID=mRNA_E_fasciculatus_S2_contig9039.17131.1|Name=mRNA_E_fasciculatus_S2_contig9039.17131.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5005bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9039:1273..6277+ (Ectocarpus fasciculatus EfasUO2) ATGCGAAATCTGGCATTACATACGCTTGCGATACTGGGCTTAGGTGTGAT
GCCGCTCGGTCGCTGCGATGGGTTCTCCGCGATACCGTCCGTTTTGAAGC
TCAGCAATCCGCCGAGCATGATCATGCTCGGCAAGGCTTCTAGCATCCAT
GGTGTCCAACGTTGTGGACGGCAACGGGCTGGCTGGTTACTCGGTCGTGA
AGGCTCGTCGTTCTTCCCCTCGAAATCTTTCCACTATCCTCCAGTGGCAG
CGCAAGGCTCAACGCCTCGGAGGCGCACTGCCCGGATGTGTCTGGACTTT
CACACGGGTGAGAAAGTGAAGAATGTGGATGCTTGTCATGGTTCAGCGCT
GCTGCCGCGCTGCCGCCGTCGTTAGATATCTGTGACCGGTGAGCTTAGCT
CGGGTATTGTAGTGTACAGTCGAGAGCAGCTCGACCGAGGCCGGCCGAAA
AGAGAATGTATTGTATCATATATATACATGGATCAGTTGTGTGCTCGTGG
CGAGAGACGCGCTAGCGGCGTATCCGAATGGAATCACCCGTTCGTCGCAC
CGACGAACGAATTATTCCCCCGCGTTTTCCCCCGCGATCCCCAGCAGCGC
CGAAAAGTCACCCGCTTTCTCCCCCCCCTCCGGTTTCTCCCCCAACCCAA
CCCCAAAGACTTCAACACATCCCCTTCGACTCTAGGTAGGCGTTATCTCG
AACGAGTGGTCTTTCTGTGTTTGCATGTACAAATGGTCTGTGTGCCCTGA
CGGAGATACTTTCCACGACGGGGCGTGCACACGGTGTGCCTTGTGGGGTG
ACGAATTTCGCGTGTTCAGCGGAGGTTTTGGCGTGGACACTCCGGGATTT
TCATGTGTAGACTATGGCGGTTTCTCTAGGTCGAACGACGAGGGAGTCGA
ACCATGTGTTGATATCGGTTCGCTTCATGCAATACACCGGCACAAGTGAG
ATGAACCACAAGCCGCCAGAAACCTAGACTACACCGGAAGGAAGCGTTCA
CTCCCAGAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAAAACGTTGGCCTGACTACTTCCTTTCTG
CATGTTGTTGCTGACTCCGCTGTGCTTCGACCCCTGACACTTGGTCGCCT
ACCTCCTCGTATCGCGGACTACACAATACCCTTTCGTCGTATCTGCGCAG
CGCGTGCCGCCGCCGGTAGCCTCGGAGCGACCGCAGCCGCCGCCGTGTTG
CGCGGGGGAGCCATGGGTGAGAATTGTCGATTTCTTGGGGACCTCCTATG
TGGCATTGTTCCTCTGGTCCGAAGCGGCCCAAAGCACAGCTAGCATCGCT
ATTTGGCGAGTTCGTCCACTTCGTTATCTTGGGGTGTTCTTTACCGTAGC
CTGGAGTTTAGTTACAGTTTCTCGGACCGTGAGCGATCGATCAAATGGGC
CGACCCTTGAGGAGGGTGCTAGCTTGGGTTATATATTTTCTGCGCAGCTA
TCCTTTCATCGTGGTGCGGAATGGCAGTCTTGCCGATGGTGGCACGTGCT
GTCCGACCTGGCAGCTGTCGGGACGCCGGACATCAGGGCTTGGAGTCGGT
GCTCCTGTTCTCGTGTTTATTGGTTTTGCCGTGGTTGGGCTCACGTCGGC
ATGAGGAACATCCCGAGTTTTGCTGGTCTTTTCCTTTTCCTATAGCTGCA
CGTGGACTGCCTTACAATACAAATGTCCCATCACCCAGACTCTACGTACT
TGTATTGTTGCACCGCCAACCTATACAACGTTTCTCGCATGCCATGGTGG
GACATGTATCATCCTTGGCACCATGTACACGCTCACATTGTTCATACCAA
GCTATGTTTTCTTTGTTGTCGCAATTTCAACGTCCCTCTGACATGTGCCG
ACGCAGAGCAAAACGTCCTATCTGGCGTGTTGGGGGAACTCGCCAATATT
CGCACGCCTGCAGCCCTTCTCGGCGGCGCCGCCCTCCGCACGATGTTCTT
TCAGCCCAAGCCCGATGCCAACAAGCGGCTTCACCTGCTCTACACCCTGC
TCTCTACCTCCGCCTTCTCGCTGCAGCTGGTGTGCGTGCTTTGCTCGACG
GTGAGACTGGCCGTAGCAGCGGTCGTGAGAACCTTCTACACGTTGGTGTC
AGCCATGCCCGCCCAATTATTGCTATTTTTAGGACATTCGAAACCGGTTC
GGTTTTCGTTGTGTCCCCGTGGGATGGGAAATGTGTTTTTATGAACTCAT
CACGAACAACGAACTTTTCTACAACTGTGCCGACCAAGGATGTTGGCGCT
TACTCCGATGTAGGACTTGGTGTCGTGCCTGTTGGCACCCTGTGCTTTGA
CCGTGCACAGCCCTCAATCGCCAAAATGAACAGAGGAAGACCTGCAAGGT
TTTCTGGTCTAAACTATGACAGAAAATTGGAGAGACTCTTCTCTCTGTGT
GTCTGTAACCCCGGCGTCGCTGTTTGCTGTACTGGCTCCTCCAGCTCACG
TACACGTCGATAGCGAGCCGTCCCGAGGCTATGGCGATATCGGCTATCAG
CTATCTGTCGGAGCAGATGCAGTGGGAATTTTTCGTCATTCGGGGCAGGT
GGGCCTTGCAATGCATCCATAGAGGTTTTAATAATCGTTCGATGTTTGTA
TTCATCTTTTTTGTATCGTATTCGATTCTCCACCTCCACATCCGGACCTT
GATCTGAACTATAGTCCCGCATTACACATACTTCTCCAAGATCGTTCCAA
CGTCATTGGTCTTGCGTGTTCCTCCTGCTGGTGTGTGTGCCTGGCGTTCG
ACGCAATGGGTTGGGGGTAACACGGCGATGCCTTAGGCAACGCAGCGCAA
TTGAAGAATGAAATAGGTCGTACAGCCTGCGAGATTCTGCATCTGAGAAT
ACCTCACCCACTGCACGATACTCTGTAAAGGCAGGTTTGTTGATGGCCCT
CCAGAGGCATTAAGCAGTCTGGCCGGTCTGCGAAGCGTTCTACCAGCACA
ACGCCTGACGCCCGTTCCCCACCTGAACTATATCTGATCGTCCCGTTCTT
CTGCGCATTCCCCCCGTCTCGATGCGTGTTATATCTCCAAACAAAATTGG
CGCAGCTTCGTTTATGGCCTTTTCTCTTTCCTCGCAGCGCTGGCCTGTCG
CGCCTGGCTTACGTTCTGTGAGTGTGTTTGGGAGACCCCGCTCTGGGTCC
GAATGTGTTTGACGCACGCGGTGCGCATTTTTTCGAGTTTTGTTCCGTGG
TACCTTTCGGCTTAGATAGATGCCATGACCATTTTGCCATTGGCTTCGTT
ATTGCAGGGTTGCCCTCGATAAAGATATATACTACTGGTTTAAGCCGTAA
CAGGTTGAGTTTTGCACGCTACCAAGCTCATCCCGAACGTGTCTGAAGGG
CCATCGCCTTTGAATTTCGCAAACTCTATTCAAGAGTGGCGTCGACCCTC
TGCTAGGTTTGGGGGAGCGAAATCACTGCAGCGTCGGCTTGCTTTTCGCG
GTACGTTTGGTTACCCCTGGTGGGTGCTTTTGCCTCGCTTGCCTCATGAA
CTACTTCGACCAATCTTGCTCTCCGCTTTGTTGGAAGATGGTGTCCTTCT
CACCGTCGTGGTCGTTCGAGTGCGCCATGTCTGCTGCTGGTGAAAGGCTG
TGCCAATCCTAACTGTCGCGCTCACTGGTTCTGAAGGAAGCAATGGACAT
GTTTTCCATGCAACCGAATACCAGATGAGGGAAAGGAGAGAGGGACCGCG
TGGATAATCATGGGCGTCCTGGCGAGCTCGGCGATTTTCCTGCTCAACTT
CATTCACTACACGCACAGTGAGTATGTCATATTCCCGTATGGGTCACGTG
TATCCACGACTTATAGACGCCGTATTTTTGCATTATTTTTGCCGCTGGCA
AGTAACCGCGAGACCGACCAATTTATCGGTGGAGACCCAAGGTCAGGCTG
CGTCCTTACGTCGGTTTCCTGCCTTCCCGTTGTTGCCTCTCCAGATTCAC
TGACGCTTTGTCTCGGGGGCATGACCAAGGCCTTGATCTCGCTAACGCTG
CGCAACATGTACGCTACGAAGAAGCGTTTCTTTCGGCACGTGATTGCGGC
CTTCGCAATCTGGGGTGTCGTGAAGCTGCTCAAGCTTGGACCAAGTGGAG
GCGCT back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig9039:1273..6277+ >mRNA_E_fasciculatus_S2_contig9039.17131.1 ID=mRNA_E_fasciculatus_S2_contig9039.17131.1|Name=mRNA_E_fasciculatus_S2_contig9039.17131.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=987bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9039:1273..6277+ (Ectocarpus fasciculatus EfasUO2) ATGCGAAATCTGGCATTACATACGCTTGCGATACTGGGCTTAGGTGTGAT GCCGCTCGGTCGCTGCGATGGGTTCTCCGCGATACCGTCCGTTTTGAAGC TCAGCAATCCGCCGAGCATGATCATGCTCGGCAAGGCTTCTAGCATCCAT GGTGTCCAACGTTGTGGACGGCAACGGGCTGGCTGGTTACTCGGTCGTGA AGGCTCGTCGTTCTTCCCCTCGAAATCTTTCCACTATCCTCCAGTGGCAG CGCAAGGCTCAACGCCTCGGAGGCGCACTGCCCGGATGTGTCTGGACTTT CACACGGCGCGTGCCGCCGCCGGTAGCCTCGGAGCGACCGCAGCCGCCGC CGTGTTGCGCGGGGGAGCCATGGAGCAAAACGTCCTATCTGGCGTGTTGG GGGAACTCGCCAATATTCGCACGCCTGCAGCCCTTCTCGGCGGCGCCGCC CTCCGCACGATGTTCTTTCAGCCCAAGCCCGATGCCAACAAGCGGCTTCA CCTGCTCTACACCCTGCTCTCTACCTCCGCCTTCTCGCTGCAGCTGGTGT GCGTGCTTTGCTCGACGCTCACGTACACGTCGATAGCGAGCCGTCCCGAG GCTATGGCGATATCGGCTATCAGCTATCTGTCGGAGCAGATGCAGTGGGA ATTTTTCGTCATTCGGGGCAGCTTCGTTTATGGCCTTTTCTCTTTCCTCG CAGCGCTGGCCTGTCGCGCCTGGCTTACGTTCTATGAGGGAAAGGAGAGA GGGACCGCGTGGATAATCATGGGCGTCCTGGCGAGCTCGGCGATTTTCCT GCTCAACTTCATTCACTACACGCACAATTCACTGACGCTTTGTCTCGGGG GCATGACCAAGGCCTTGATCTCGCTAACGCTGCGCAACATGTACGCTACG AAGAAGCGTTTCTTTCGGCACGTGATTGCGGCCTTCGCAATCTGGGGTGT CGTGAAGCTGCTCAAGCTTGGACCAAGTGGAGGCGCT back to top
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