mRNA_E_fasciculatus_S2_contig8867.16968.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8867.16968.1
Unique NamemRNA_E_fasciculatus_S2_contig8867.16968.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8867.16968.1 vs.
Match: ABC (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ25_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 2.780e-57
Identity = 99/101 (98.02%), Postives = 99/101 (98.02%), Query Frame = 1
Query:    1 FRWRQSLAHSPPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALQS 303
            FRWRQSLA S PTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALQS
Sbjct:  732 FRWRQSLALSRPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALQS 832          
BLAST of mRNA_E_fasciculatus_S2_contig8867.16968.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B6_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 7.080e-57
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 1
Query:    1 FRWRQSLAHSPPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALQS 303
            FRWRQSLA S PTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACAL+S
Sbjct:  706 FRWRQSLALSRPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALES 806          
BLAST of mRNA_E_fasciculatus_S2_contig8867.16968.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ8_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.720e-39
Identity = 71/101 (70.30%), Postives = 85/101 (84.16%), Query Frame = 1
Query:    1 FRWRQSLAHSPPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALQS 303
            FRWR S    PPTL +I+LE+ P + VCVYG TG+GKS+LLMA LQEL+T +G++LMNGSV+YASQ+AWIQNATVRDNILFG  FDP RY+ VLEACAL+S
Sbjct:  483 FRWRASNPLDPPTLRDISLEVLPGEFVCVYGPTGSGKSTLLMAVLQELITEKGKALMNGSVAYASQKAWIQNATVRDNILFGRPFDPVRYEQVLEACALKS 583          
BLAST of mRNA_E_fasciculatus_S2_contig8867.16968.1 vs.
Match: ABC (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4L0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 4.200e-29
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1
Query:   37 TLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALQS 303
            TLS++ LE+KP +LVCVYG TG GKSSLL++ L E+  VEG   +NG+V+YA+QRAWIQNAT+RDN+LFG  +DP RY  VL ACAL +
Sbjct:  732 TLSDVTLEVKPGELVCVYGPTGCGKSSLLLSLLGEVRRVEGTVEINGTVAYAAQRAWIQNATLRDNVLFGSPYDPERYARVLSACALTA 820          
BLAST of mRNA_E_fasciculatus_S2_contig8867.16968.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVW4_HETAK)

HSP 1 Score: 103 bits (258), Expect = 1.850e-26
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 FRWRQSLAHSPPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVT----------VEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALQS 303
            +RWR +     P L    L ++P QLV VYG TG GKSSLL+A L ELV             G +   G+V+Y +Q+AWIQNAT+RDN+LFG  +DP RY  V+ ACAL++
Sbjct:    7 YRWRGARPGERPALREARLHVQPGQLVVVYGPTGCGKSSLLLALLGELVEGPSGGRTPGGTTGGAGAKGTVAYCAQQAWIQNATLRDNVLFGRPYDPERYRQVIRACALEA 117          
BLAST of mRNA_E_fasciculatus_S2_contig8867.16968.1 vs.
Match: multidrug (resistance-associated protein 1-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889614)

HSP 1 Score: 110 bits (276), Expect = 3.910e-26
Identity = 51/100 (51.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 FRWRQSLAHSPPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALQ 300
            F W +++ H  PTL NIN+EI+ ++L  V G  G+GKSSL+ A L E+  +EG+ ++  SV+Y +Q+AWIQNATVRDNILFG  ++  +YD ++EACAL+
Sbjct:  665 FTWDKTMPH--PTLKNINIEIQDEKLYAVVGQVGSGKSSLISAILGEMENIEGKVVIKSSVAYVAQQAWIQNATVRDNILFGMHYNAEKYDRIIEACALK 762          
BLAST of mRNA_E_fasciculatus_S2_contig8867.16968.1 vs.
Match: multidrug (resistance-associated protein 1-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8898C1)

HSP 1 Score: 110 bits (274), Expect = 7.280e-26
Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 FRWRQSLAHSPPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALQ 300
            F W +++    PTL NIN+EI+ ++L  V G  G+GKSSL+ A L E+  +EG+ ++  SV+Y +Q+AWIQNATVRDNILFG  +D  +YD ++EACAL+
Sbjct:  667 FTWDKTMPE--PTLKNINIEIQDEKLYAVVGQVGSGKSSLISAILGEMENIEGKVIVKSSVAYVAQQAWIQNATVRDNILFGMNYDAEKYDRIIEACALK 764          
BLAST of mRNA_E_fasciculatus_S2_contig8867.16968.1 vs.
Match: Hypothetical (protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2P0B6_9HEXA)

HSP 1 Score: 101 bits (251), Expect = 3.130e-25
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    1 FRWRQSLAHSPPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALQ 300
            F W ++     PTL NINL +K   LV V G  G+GKSSLL A L E+  + G     GSV Y +Q+AWIQNAT+R+NILFG  FDP  Y+ ++EACAL+
Sbjct:   29 FTWDET--RDIPTLRNINLRVKKGSLVAVVGTVGSGKSSLLSAILGEMEKISGWVNTYGSVGYVAQQAWIQNATLRENILFGRKFDPISYNRIIEACALK 126          
BLAST of mRNA_E_fasciculatus_S2_contig8867.16968.1 vs.
Match: ATP-binding (cassette sub-family C member 2 n=2 Tax=Oryctolagus cuniculus TaxID=9986 RepID=MRP2_RABIT)

HSP 1 Score: 108 bits (269), Expect = 3.440e-25
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 FRWRQSLAHSPPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACAL 297
            F W ++L    PT+ N+NL+I P QLV V G  G+GKSSL+ A L E+  V G   + G+ +Y  Q++WIQN T++DNILFG  FD RRY  VLEACAL
Sbjct:  642 FTWDRNLE---PTIRNVNLDIMPGQLVAVVGTVGSGKSSLMSAMLGEMENVHGHITIKGTTAYVPQQSWIQNGTIKDNILFGAEFDERRYQRVLEACAL 737          
BLAST of mRNA_E_fasciculatus_S2_contig8867.16968.1 vs.
Match: MRP2 ((Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7F6E9_9TELE)

HSP 1 Score: 103 bits (257), Expect = 5.130e-25
Identity = 51/99 (51.52%), Postives = 71/99 (71.72%), Query Frame = 1
Query:    1 FRWRQSLAHSPPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACAL 297
            F W +    S P L N++L+IKP +LV V GA G+GKSSL+ A L E+ + +G   + GS+++  Q+AWIQNAT+RDNILFG  ++ RR++ VLEACAL
Sbjct:  125 FAWEKD---SEPLLKNVSLDIKPGRLVAVVGAVGSGKSSLMSALLGEMHSTKGFINIQGSLAFVPQQAWIQNATLRDNILFGSPYEERRFEEVLEACAL 220          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8867.16968.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ABC2.780e-5798.02protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.080e-5797.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
P-loop1.720e-3970.30containing nucleoside triphosphate hydrolase prote... [more]
ABC4.200e-2962.92protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Hypothetical1.850e-2647.75protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
multidrug3.910e-2651.00resistance-associated protein 1-like n=1 Tax=Gigan... [more]
multidrug7.280e-2651.00resistance-associated protein 1-like n=1 Tax=Gigan... [more]
Hypothetical3.130e-2552.00protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0... [more]
ATP-binding3.440e-2552.53cassette sub-family C member 2 n=2 Tax=Oryctolagus... [more]
MRP25.130e-2551.52(Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=18... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8867contigE_fasciculatus_S2_contig8867:78..1166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score199.5
Seed ortholog evalue7.6e-49
Seed eggNOG ortholog2880.D7G0B6
Model size314
KEGG koko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
Cds size312
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842541.4412973-CDS-E_fasciculatus_S2_contig8867:77..1551696842541.4412973-CDS-E_fasciculatus_S2_contig8867:77..155Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8867 78..155 +
1696842541.454068-CDS-E_fasciculatus_S2_contig8867:447..5911696842541.454068-CDS-E_fasciculatus_S2_contig8867:447..591Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8867 448..591 +
1696842541.4625235-CDS-E_fasciculatus_S2_contig8867:1076..11661696842541.4625235-CDS-E_fasciculatus_S2_contig8867:1076..1166Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8867 1077..1166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8867.16968.1prot_E_fasciculatus_S2_contig8867.16968.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8867 78..1166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8867.16968.1

>prot_E_fasciculatus_S2_contig8867.16968.1 ID=prot_E_fasciculatus_S2_contig8867.16968.1|Name=mRNA_E_fasciculatus_S2_contig8867.16968.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=104bp
FRWRQSLAHSPPTLSNINLEIKPKQLVCVYGATGAGKSSLLMACLQELVT
VEGRSLMNGSVSYASQRAWIQNATVRDNILFGCAFDPRRYDMVLEACALQ
SVR*
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mRNA from alignment at E_fasciculatus_S2_contig8867:78..1166+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8867.16968.1 ID=mRNA_E_fasciculatus_S2_contig8867.16968.1|Name=mRNA_E_fasciculatus_S2_contig8867.16968.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1089bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8867:78..1166+ (Ectocarpus fasciculatus EfasUO2)
TTCCGGTGGAGGCAGTCTCTGGCGCACTCTCCCCCCACGCTCTCCAACAT CAACCTTGAGATCAAGCCGAAGCAGCTGGTGAGAGGCTGCGAAGCTATCT ACTTGAGGGAGATAACATGTGGAGTGTTTTGTTTGTTGATGGTGACTTTG ACTCATTTTCTTGTACTTTTTGTTCATTGTTGTTTGGTTGGTTCGGTGTT ATCGCTGGGCTGTTGGACCTTGGACAACGTCACAGCGGACAGCAGTCTGT GTTTGAACATTCTTTCCCTTCTTGCATCACCCCTTGATGACACTGCTGTG CTCTCGTGACACGCCCGTGCCTTGGTCGTCCTCGTAACGTCTGCTTGCGT CTTCCCTGTAAATGTTAAAGGTGTGTGTGTACGGCGCTACCGGCGCAGGC AAGAGCTCCCTGCTGATGGCCTGTCTCCAGGAGCTCGTGACGGTGGAGGG TAGGAGCCTCATGAACGGCTCCGTTTCGTACGCCAGCCAGCGGGCGTGGA TCCAGAACGCTACGGTACACGCCTCGCTCGCTTATGCGGTGCAGCCTGTA GAAAAATGCGGTGCAACTACTTGTTTGACCCTCCCTAGTGCGGTGTAACT ATGACGAGTGCCTTGCCCGAACCTGCGGTGCAACTGCGAGCGCTTTGCTT GCCCCCACTCATCACGAACAAAAGTTGTGTACGATGGTCTGTAGAGCAGA CGAAGACGGACTTTCGCTATGTTTGTTTTGTAACTTTCGCTATGTGTTTT TTATATTTTTTCACCGCCCCGTCGCCTCCACAATCCAGCACCCGGTGGAT CCAAATGTCACAGCGGGGTATCTTTGGCTAGCAAGTTCTACGTACCGGAC TAGAATTGCCATTGCTGTCTCTGTCTGTCTGTCTGTCTCACTCTGGTCCC CCCCCCTTCGCACCCAACACTCGCAGACTCTGCCGAGCCTTTTTCACAAG AACCCTTTACCTCGGGTGTTTTGTTGTGTTTTGACGGATTTCTTGTCAGG TGCGAGATAACATCTTGTTCGGCTGCGCGTTCGATCCCCGGCGCTACGAC ATGGTCCTTGAGGCGTGCGCTCTCCAGTCGGTGAGATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8867:78..1166+

>mRNA_E_fasciculatus_S2_contig8867.16968.1 ID=mRNA_E_fasciculatus_S2_contig8867.16968.1|Name=mRNA_E_fasciculatus_S2_contig8867.16968.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8867:78..1166+ (Ectocarpus fasciculatus EfasUO2)
TTCCGGTGGAGGCAGTCTCTGGCGCACTCTCCCCCCACGCTCTCCAACAT
CAACCTTGAGATCAAGCCGAAGCAGCTGGTGTGTGTGTACGGCGCTACCG
GCGCAGGCAAGAGCTCCCTGCTGATGGCCTGTCTCCAGGAGCTCGTGACG
GTGGAGGGTAGGAGCCTCATGAACGGCTCCGTTTCGTACGCCAGCCAGCG
GGCGTGGATCCAGAACGCTACGGTGCGAGATAACATCTTGTTCGGCTGCG
CGTTCGATCCCCGGCGCTACGACATGGTCCTTGAGGCGTGCGCTCTCCAG
TCGGTGAGATAG
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