mRNA_E_fasciculatus_S2_contig8853.16948.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8853.16948.1
Unique NamemRNA_E_fasciculatus_S2_contig8853.16948.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8853.16948.1 vs.
Match: Uncharacterized (protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PLA3_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 2.510e-7
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   13 TKVCKAIAELGRLDLLRCARRNGLPWDEGTCSAAARGGHYDVLTWAWVHSCP 168
            T  C A A  G+L+ L+CAR  G PWDEGTCSAAA+ GH  VL WA     P
Sbjct:  120 TLYCDAAAAGGQLEALQCARALGCPWDEGTCSAAAKFGHLAVLQWARAQDPP 171
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8853.16948.1 vs.
Match: Uncharacterized (protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NLW8_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 5.010e-7
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 LGRTTKVC-KAIAELGRLDLLRCARRNGLPWDEGTCSAAARGGHYDVLTWAWVHSCP 168
            LG  T +C +A A  G+L+ LRCAR  G PWD+GTCS AA GGH  VL WA     P
Sbjct:  115 LGDYTTLCSEAAAAGGQLEALRCARALGCPWDKGTCSFAADGGHLAVLQWARAQHPP 171
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8853.16948.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.510e-755.77protein n=1 Tax=Raphidocelis subcapitata TaxID=307... [more]
Uncharacterized5.010e-754.39protein n=1 Tax=Raphidocelis subcapitata TaxID=307... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8853contigE_fasciculatus_S2_contig8853:334..1077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size744
Hectar predicted targeting categoryother localisation
Exons1
Cds size744
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842539.8390956-CDS-E_fasciculatus_S2_contig8853:333..10771696842539.8390956-CDS-E_fasciculatus_S2_contig8853:333..1077Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8853 334..1077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8853.16948.1prot_E_fasciculatus_S2_contig8853.16948.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8853 334..1077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8853.16948.1

>prot_E_fasciculatus_S2_contig8853.16948.1 ID=prot_E_fasciculatus_S2_contig8853.16948.1|Name=mRNA_E_fasciculatus_S2_contig8853.16948.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=248bp
LGRTTKVCKAIAELGRLDLLRCARRNGLPWDEGTCSAAARGGHYDVLTWA
WVHSCPFNEDTLCSDAARGGSLDALVWAIELDYPCNENTCCTDAARSGNL
EMVQWVRGEGCGWDEKTCAAAARSGDLETLQWVRSEGCAWDKRTCAKAAR
SGNLSMLKWVRENGCAWDEETCAKAARSGNLGVLQWVRSNGCAWGKRTCS
QAALSGNLEILHWARSKGCPWDEQTCFEASRSNPAVLEWARLNGCPEW
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mRNA from alignment at E_fasciculatus_S2_contig8853:334..1077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8853.16948.1 ID=mRNA_E_fasciculatus_S2_contig8853.16948.1|Name=mRNA_E_fasciculatus_S2_contig8853.16948.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=744bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8853:334..1077+ (Ectocarpus fasciculatus EfasUO2)
CTCGGTCGAACCACCAAGGTGTGCAAGGCCATCGCGGAGCTAGGAAGACT
CGACCTCCTCCGGTGCGCGAGACGGAATGGACTGCCGTGGGACGAGGGTA
CATGTTCGGCGGCTGCCCGTGGGGGGCACTACGACGTCCTCACCTGGGCG
TGGGTCCATTCGTGTCCCTTTAACGAGGACACTCTGTGCTCTGACGCCGC
ACGCGGGGGTAGTCTGGACGCCCTGGTTTGGGCCATCGAGCTGGACTACC
CCTGCAACGAGAACACGTGCTGCACCGACGCCGCCCGGTCGGGGAACTTA
GAAATGGTGCAGTGGGTGCGGGGGGAAGGCTGTGGGTGGGACGAGAAGAC
GTGTGCTGCAGCTGCTCGGTCGGGGGATTTAGAAACTTTGCAGTGGGTTC
GGTCTGAAGGTTGTGCGTGGGACAAGAGGACGTGTGCCAAGGCTGCCCGG
TCGGGAAATTTGAGCATGCTGAAGTGGGTAAGAGAGAATGGTTGCGCGTG
GGACGAGGAGACGTGTGCCAAGGCTGCCCGGTCGGGAAATTTGGGCGTGT
TGCAGTGGGTTCGGTCTAATGGTTGTGCGTGGGGCAAGCGGACGTGCTCG
CAAGCCGCCCTATCGGGGAATCTAGAAATTTTGCATTGGGCGCGGTCCAA
AGGTTGCCCTTGGGATGAACAGACGTGCTTTGAAGCAAGCCGGTCGAACC
CAGCCGTGCTCGAATGGGCTCGGCTGAATGGCTGCCCCGAGTGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8853:334..1077+

>mRNA_E_fasciculatus_S2_contig8853.16948.1 ID=mRNA_E_fasciculatus_S2_contig8853.16948.1|Name=mRNA_E_fasciculatus_S2_contig8853.16948.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=744bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8853:334..1077+ (Ectocarpus fasciculatus EfasUO2)
CTCGGTCGAACCACCAAGGTGTGCAAGGCCATCGCGGAGCTAGGAAGACT
CGACCTCCTCCGGTGCGCGAGACGGAATGGACTGCCGTGGGACGAGGGTA
CATGTTCGGCGGCTGCCCGTGGGGGGCACTACGACGTCCTCACCTGGGCG
TGGGTCCATTCGTGTCCCTTTAACGAGGACACTCTGTGCTCTGACGCCGC
ACGCGGGGGTAGTCTGGACGCCCTGGTTTGGGCCATCGAGCTGGACTACC
CCTGCAACGAGAACACGTGCTGCACCGACGCCGCCCGGTCGGGGAACTTA
GAAATGGTGCAGTGGGTGCGGGGGGAAGGCTGTGGGTGGGACGAGAAGAC
GTGTGCTGCAGCTGCTCGGTCGGGGGATTTAGAAACTTTGCAGTGGGTTC
GGTCTGAAGGTTGTGCGTGGGACAAGAGGACGTGTGCCAAGGCTGCCCGG
TCGGGAAATTTGAGCATGCTGAAGTGGGTAAGAGAGAATGGTTGCGCGTG
GGACGAGGAGACGTGTGCCAAGGCTGCCCGGTCGGGAAATTTGGGCGTGT
TGCAGTGGGTTCGGTCTAATGGTTGTGCGTGGGGCAAGCGGACGTGCTCG
CAAGCCGCCCTATCGGGGAATCTAGAAATTTTGCATTGGGCGCGGTCCAA
AGGTTGCCCTTGGGATGAACAGACGTGCTTTGAAGCAAGCCGGTCGAACC
CAGCCGTGCTCGAATGGGCTCGGCTGAATGGCTGCCCCGAGTGG
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