mRNA_E_fasciculatus_S2_contig8837.16932.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8837.16932.1
Unique Name	mRNA_E_fasciculatus_S2_contig8837.16932.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8837.16932.1 vs.
Match: DNA_pol_lambd_f (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 8.350e-26
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 1

Query:  235 TLRVALVGRGFSKNQQEVFRKNGSKLGMEVLVRPEAKVGKPPNLFEPPPGATPGKGKK 408
            TLRVALVGRGFSKNQQEVFRKNGSKLGMEVLVRPEAKVGKPPNLFE  PGATPGKGKK
Sbjct:  400 TLRVALVGRGFSKNQQEVFRKNGSKLGMEVLVRPEAKVGKPPNLFEASPGATPGKGKK 457

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BLAST of mRNA_E_fasciculatus_S2_contig8837.16932.1 vs.
Match: DNA (polymerase mu n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK4_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.040e-11
Identity = 48/78 (61.54%), Postives = 52/78 (66.67%), Query Frame = 1

Query:  112 QGLDKHGDGAQGSPXXXXXXXXXXXXXXXXXXXXXXXXXXTTLRVALVGRGFSKNQQEVFRKNGSKLGMEVLVRPEAK 345
            QG+DK GDGA                        XXXXXX TLRVALVGRGFSKNQQEVFRKNGSK+G+EVLVRPE+K
Sbjct:   40 QGVDKQGDGAP-----------------------XXXXXXATLRVALVGRGFSKNQQEVFRKNGSKVGIEVLVRPESK 94

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8837.16932.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8837.16932.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
DNA_pol_lambd_f	8.350e-26	96.55	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
DNA	1.040e-11	61.54	polymerase mu n=1 Tax=Ectocarpus siliculosus TaxID...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8837	contig	E_fasciculatus_S2_contig8837:3242..4183 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	71.6
Seed ortholog evalue	3.4e-10
Seed eggNOG ortholog	2880.D8LNK4
Preferred name	DNTT
Model size	450
KEGG ko	ko:K00977,ko:K03512,ko:K03513,ko:K06636,ko:K10981
KEGG Pathway	ko03410,ko03450,ko04110,ko04111,ko04113,ko04114,ko04640,map03410,map03450,map04110,map04111,map04113,map04114,map04640
KEGG Module	M00296
Hectar predicted targeting category	other localisation
GOs	GO:0000228,GO:0000278,GO:0000726,GO:0000731,GO:0000785,GO:0000790,GO:0000791,GO:0001775,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002521,GO:0002566,GO:0003674,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0003912,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006281,GO:0006284,GO:0006287,GO:0006301,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016070,GO:0016363,GO:0016445,GO:0016446,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019985,GO:0022402,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0031667,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0033198,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0042113,GO:0042221,GO:0042276,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045321,GO:0046483,GO:0046649,GO:0046683,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051575,GO:0051716,GO:0061674,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1901698,GO:1901700,GO:1902969,GO:1903047,GO:1990506
Exons	3
EggNOG free text desc.	DNA-directed DNA polymerase activity
EggNOG OGs	COG1796@1,KOG2534@2759
EC	2.7.7.31,2.7.7.7
Cds size	450
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko03036,ko03400

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842538.3612819-CDS-E_fasciculatus_S2_contig8837:3241..3445	1696842538.3612819-CDS-E_fasciculatus_S2_contig8837:3241..3445	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8837 3242..3445 +
1696842538.3727958-CDS-E_fasciculatus_S2_contig8837:3466..3607	1696842538.3727958-CDS-E_fasciculatus_S2_contig8837:3466..3607	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8837 3467..3607 +
1696842538.3819573-CDS-E_fasciculatus_S2_contig8837:4078..4183	1696842538.3819573-CDS-E_fasciculatus_S2_contig8837:4078..4183	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8837 4079..4183 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8837.16932.1	prot_E_fasciculatus_S2_contig8837.16932.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8837 3242..4183 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8837:3242..4183+
coding sequence from alignment at E_fasciculatus_S2_contig8837:3242..4183+

protein sequence of mRNA_E_fasciculatus_S2_contig8837.16932.1

>prot_E_fasciculatus_S2_contig8837.16932.1 ID=prot_E_fasciculatus_S2_contig8837.16932.1|Name=mRNA_E_fasciculatus_S2_contig8837.16932.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=150bp
MKEAEEEEGDDWDGSDRQDGDGRSGEKEHQQRRRRQRQGLDKHGDGAQGS
PPPPPVAASEVTALASSRSSLAAAAAATTLRVALVGRGFSKNQQEVFRKN
GSKLGMEVLVRPEAKVGKPPNLFEPPPGATPGKGKKRRRSSCNERHHRTS

mRNA from alignment at E_fasciculatus_S2_contig8837:3242..4183+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8837.16932.1 ID=mRNA_E_fasciculatus_S2_contig8837.16932.1|Name=mRNA_E_fasciculatus_S2_contig8837.16932.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=942bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8837:3242..4183+ (Ectocarpus fasciculatus EfasUO2)
ATGAAAGAAGCAGAGGAGGAGGAGGGGGATGACTGGGATGGTAGTGATCG
GCAAGATGGAGACGGCAGAAGTGGAGAGAAGGAACACCAGCAGCGGAGGC
GACGGCAGCGGCAGGGCTTGGACAAACACGGGGATGGGGCGCAAGGGTCC
CCGCCCCCTCCTCCGGTAGCAGCATCCGAGGTCACCGCCTTGGCCTCCAG
CAGAATCAACCACGGTGTGGCTTCTTCGAGTCTTGCTGCTGCTGCTGCTG
CTACTACCCTCCGTGTTGCGCTGGTCGGACGAGGGTTCTCGAAGAACCAA
CAGGAGGTGTTCCGGAAGAACGGGTCCAAGCTTGGCATGGAGGTGCTTGT
GCGCCCTGAGGCCAAGGTGGGTGGTGCCTACGTAGCAGCGTTACATACCG
TAGGTGATATCACACACCCTGGTCTGGTTTTCAAAGCGCGATTACGCCAC
AGCAGCAGAAAGAGCGGCGGTGCCGATACCGGTGACGTTGGAACTGTCTC
GTGGAGAGAGAGCGTTCCGATAATGCATCCTTTGGGTTGTGAAACCTCTT
CGTCGTGGAGCAGTCGAGCTCTGGAAATCGGTCCAGGGGGGAGTGATATC
TTGTGTCACCTACGGTGTGGGGGTGGAAGAGGGAACCTCGAAGCCTCCAC
CCGACTCTTGGAGGTGCCCGTACTACATTTTCAGCAAGAAGTGACGGTTG
TCGACGAAGCGGTGACGCATGATTGACCGTCAACATAGAAGTATCGGCGG
CATGAGTCCTCCCCCCCCTCCTACAACGCCTCTTTGCTGATGTCGTGAGG
GGTGTCATTCTCGTGAAAAACACACACACGCACGCAGGTAGGAAAACCTC
CCAACTTGTTCGAGCCCCCGCCCGGCGCTACACCTGGCAAGGGCAAGAAG
CGCAGGCGTAGCAGTTGCAACGAGCGGCACCACCGAACGTCG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8837:3242..4183+

>mRNA_E_fasciculatus_S2_contig8837.16932.1 ID=mRNA_E_fasciculatus_S2_contig8837.16932.1|Name=mRNA_E_fasciculatus_S2_contig8837.16932.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=450bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8837:3242..4183+ (Ectocarpus fasciculatus EfasUO2)
ATGAAAGAAGCAGAGGAGGAGGAGGGGGATGACTGGGATGGTAGTGATCG
GCAAGATGGAGACGGCAGAAGTGGAGAGAAGGAACACCAGCAGCGGAGGC
GACGGCAGCGGCAGGGCTTGGACAAACACGGGGATGGGGCGCAAGGGTCC
CCGCCCCCTCCTCCGGTAGCAGCATCCGAGGTCACCGCCTTGGCCTCCAG
CAGATCGAGTCTTGCTGCTGCTGCTGCTGCTACTACCCTCCGTGTTGCGC
TGGTCGGACGAGGGTTCTCGAAGAACCAACAGGAGGTGTTCCGGAAGAAC
GGGTCCAAGCTTGGCATGGAGGTGCTTGTGCGCCCTGAGGCCAAGGTAGG
AAAACCTCCCAACTTGTTCGAGCCCCCGCCCGGCGCTACACCTGGCAAGG
GCAAGAAGCGCAGGCGTAGCAGTTGCAACGAGCGGCACCACCGAACGTCG