mRNA_E_fasciculatus_S2_contig8732.16837.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8732.16837.1
Unique NamemRNA_E_fasciculatus_S2_contig8732.16837.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8732.16837.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 1.640e-60
Identity = 95/118 (80.51%), Postives = 105/118 (88.98%), Query Frame = 1 
Query:    1 NAEAFGQQRGSEARGQVQDDCNKLEELRVCHWLRSISRRVPDNDVILVATKCDLACGNTGDIGRRLEHACRTWLSSWLRNGKQAVRLEHGVCLTSCCPAAVSEHGENTAGNHVSKGGW 354
            N EAF Q+ GSEA GQVQ+DC KLEELRVCHWLRSISRRVP +DVILVATKCDLACGN GD+G+RL HACR WLS+W+RNG Q VRLEHGVCLTSCCPAAVSEHGE++ GNH +KGGW
Sbjct:  676 NVEAFEQRLGSEANGQVQEDCRKLEELRVCHWLRSISRRVPYSDVILVATKCDLACGNAGDMGKRLAHACRLWLSNWVRNGMQPVRLEHGVCLTSCCPAAVSEHGESSPGNHYAKGGW 793
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8732.16837.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL6_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.240e-51
Identity = 84/119 (70.59%), Postives = 92/119 (77.31%), Query Frame = 1 
Query:    1 NAEAFGQQRGSEARGQVQDDCNKLEELRVCHWLRSISRRVPDNDVILVATKCDLACGNTGDIGRRLEHACRTWLSSWLRNGKQAVRLEHGVCLTSCCPAAVSEHGENTAGNHVSKGGWA 357
            NA  FGQ+R SE  G V++DC KLEELRVC WLRSISRRVPDNDVILVATKCDLA GN  +IG R+E  CRTWLS W+RNG Q VRLE  VCLTSC P  V + G+  AGNH SKGGWA
Sbjct:  149 NAGEFGQRRDSEHCGGVEEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGNAREIGSRMEKTCRTWLSGWVRNGMQPVRLEPHVCLTSCFPVRVDKQGDRNAGNHGSKGGWA 267
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BLAST of mRNA_E_fasciculatus_S2_contig8732.16837.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.350e-51
Identity = 89/120 (74.17%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:    1 NAEAFGQQRGSEARGQV-QDDCNKLEELRVCHWLRSISRRVPDNDVILVATKCDLACGNTGDIGRRLEHACRTWLSSWLRNGKQAVRLEHGVCLTSCCPAAVSEHGENTAGNHVSKGGWA 357
            NA  FGQ+RGSE  G+V Q+DC KLEELRVC WLRSISRRVPDNDVILVATKCDL  GN G+IG R+E++CRTWLS W+RNG Q VRLE  VCLTSC P  V EHGE +AGNHV KGGWA
Sbjct:  488 NAGEFGQRRGSEDCGEVEQEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLVGGNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFPIRVGEHGERSAGNHVWKGGWA 607
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8732.16837.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 3.350e-49
Identity = 80/118 (67.80%), Postives = 91/118 (77.12%), Query Frame = 1 
Query:    1 NAEAFGQQRGSEARGQVQDDCNKLEELRVCHWLRSISRRVPDNDVILVATKCDLACGNTGDIGRRLEHACRTWLSSWLRNGKQAVRLEHGVCLTSCCPAAVSEHGENTAGNHVSKGGW 354
            NAEAFGQQR ++  GQ+ +DC KLEELRVC WLRSI+RRVPDND ILVATKCDL  GN  ++GRR+E ACR WL+SW+RNG Q VRLEHGV LTSC P    EHGE    NH  +GGW
Sbjct:  346 NAEAFGQQRANDTGGQIMEDCRKLEELRVCEWLRSIARRVPDNDAILVATKCDLVGGNAAEVGRRMEQACRMWLASWVRNGMQPVRLEHGVGLTSCRPTRFGEHGERGTANHTVEGGW 463
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8732.16837.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.150e-48
Identity = 81/119 (68.07%), Postives = 97/119 (81.51%), Query Frame = 1 
Query:    1 NAEAFGQQRGSEARGQVQDDCNKLEELRVCHWLRSISRRVPDNDVILVATKCDLACGNTGDIGRRLEHACRTWLSSWLRNGKQAVRLEHGVCLTSCCPAAVSEHGENTAGNHVSKGGWA 357
            NAEAFGQQRG +  GQV++DC KLEELRVC WLRS+SRRVP+NDVILVATKCDL  GN  + GRR+E A RTWL+SW+ +G Q VRLE GVCLTSCC +AV E+GE + G++ S+ GWA
Sbjct:  318 NAEAFGQQRGDDTGGQVKEDCRKLEELRVCDWLRSVSRRVPNNDVILVATKCDLVGGNAEEFGRRIEQATRTWLASWVHDGMQPVRLEPGVCLTSCCASAVGENGEKSTGHNASERGWA 436
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8732.16837.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 2.390e-47
Identity = 84/119 (70.59%), Postives = 92/119 (77.31%), Query Frame = 1 
Query:    1 NAEAFGQQRGSEARGQVQDDCNKLEELRVCHWLRSISRRVPDNDVILVATKCDLACGNTGDIGRRLEHACRTWLSSWLRNGKQAVRLEHGVCLTSCCPAAVSEHGENTAGNHVSKGGWA 357
            NA  FGQQ  SE+  QV +DC KLEELRVC WLRSISRRVP+NDVILVATKCDLA GN G IG R+EHACR WLSSW+RNG Q VRLE  V LTSC    V EHGE++ G+H  KGGWA
Sbjct:  274 NAGKFGQQTRSESNDQVGEDCRKLEELRVCDWLRSISRRVPNNDVILVATKCDLAGGNAGKIGARMEHACRRWLSSWVRNGLQPVRLEPCVSLTSCFETGVGEHGESSTGSHELKGGWA 392
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8732.16837.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 5.740e-46
Identity = 81/119 (68.07%), Postives = 93/119 (78.15%), Query Frame = 1 
Query:    1 NAEAFGQQRGS-EARGQVQDDCNKLEELRVCHWLRSISRRVPDNDVILVATKCDLACGNTGDIGRRLEHACRTWLSSWLRNGKQAVRLEHGVCLTSCCPAAVSEHGENTAGNHVSKGGW 354
            NAE+FGQQRG+ E  GQV++DC KLEELRVC WLRSISRRVPDNDVILVATKCD   GN G+IG+R+E A R WL+SW+R+G Q VRLE GVCLTSCC   V E GE +  N   +GGW
Sbjct:  417 NAESFGQQRGTCETGGQVKEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDSVGGNAGEIGKRIELASRMWLASWVRSGMQPVRLEPGVCLTSCCTTNVCEDGERSTRNQAMEGGW 535
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8732.16837.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA3_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.780e-45
Identity = 79/119 (66.39%), Postives = 90/119 (75.63%), Query Frame = 1 
Query:    1 NAEAFGQQRGSEARGQVQDDCNKLEELRVCHWLRSISRRVPDNDVILVATKCDLACGNTGDIGRRLEHACRTWLSSWLRNGKQAVRLEHGVCLTSCCPAAVSEHGENTAGNHVSKGGWA 357
            NA  F Q+  S+   QV++DC KLE LRVC WLRSISRRVP NDVILVATKCDL  GN  + GRR+EHAC+TWLSSW+R+G  AVRLE  V LTSC P  V EHGE++ GNH SK GWA
Sbjct:  147 NAGEFEQRLRSDNIDQVEEDCRKLEGLRVCDWLRSISRRVPGNDVILVATKCDLVSGNVEETGRRMEHACQTWLSSWVRDGMDAVRLERHVSLTSCFPIVVGEHGESSPGNHASKQGWA 265
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8732.16837.1 vs.
Match: LRR-GTPase (of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 4.980e-45
Identity = 80/119 (67.23%), Postives = 90/119 (75.63%), Query Frame = 1 
Query:    1 NAEAFGQQRGSEARGQVQDDCNKLEELRVCHWLRSISRRVPDNDVILVATKCDLACGNTGDIGRRLEHACRTWLSSWLRNGKQAVRLEHGVCLTSCCPAAVSEHGENTAGNHVSKGGWA 357
            NA AFGQQ   +  G+V++DC KLEELRVC WLRSISRRVP NDVILV TKCDLA GN  +IG R+EHACRTWLSSW+R+G Q V+LE GV  TSC PA   +HGE    NH SKG WA
Sbjct:  224 NAAAFGQQLERKNSGEVEEDCRKLEELRVCDWLRSISRRVPHNDVILVVTKCDLAGGNAAEIGERVEHACRTWLSSWVRHGMQPVQLEPGVSFTSCFPAEGGQHGEVGTENHGSKGDWA 342
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8732.16837.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.210e-44
Identity = 85/138 (61.59%), Postives = 93/138 (67.39%), Query Frame = 1 
Query:    1 NAEAFGQQRGSEARGQVQDDCNKLEELRVCHWLRSISRRVPDNDVILVATKCDLACGNTGDIGRRLEHACRTWLSSWLRN-------------------GKQAVRLEHGVCLTSCCPAAVSEHGENTAGNHVSKGGWA 357
            NA  FGQ+R SE  G V+ DC KLEELRVC WLRSISRR+PDNDVILVATKCDLA GN  +IG R+E ACRTWLS W+RN                   G Q VRLE  VCLTS  P  V EHG+ +AGNH SKGGWA
Sbjct:   90 NAGEFGQRRDSEHCGGVEGDCRKLEELRVCDWLRSISRRIPDNDVILVATKCDLAGGNAREIGSRMEKACRTWLSGWVRNAXXXXXXXXXXXXXXXXXXGMQPVRLEPHVCLTSSLPVRVDEHGDRSAGNHGSKGGWA 227
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8732.16837.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
LRR-GTPase1.640e-6080.51of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized1.240e-5170.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LRR-GTPase2.350e-5174.17of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
LRR-GTPase3.350e-4967.80of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
LRR-GTPase1.150e-4868.07of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized2.390e-4770.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LRR-GTPase5.740e-4668.07of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized1.780e-4566.39protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LRR-GTPase4.980e-4567.23of the ROCO family, incomplete sequence n=1 Tax=Ec... [more]
Uncharacterized1.210e-4461.59protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8732contigE_fasciculatus_S2_contig8732:1147..1503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score211.1
Seed ortholog evalue2.9e-52
Seed eggNOG ortholog2880.D8LCS7
Model size359
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size357
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842529.6634603-CDS-E_fasciculatus_S2_contig8732:1146..15031696842529.6634603-CDS-E_fasciculatus_S2_contig8732:1146..1503Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8732 1147..1503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8732.16837.1prot_E_fasciculatus_S2_contig8732.16837.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8732 1147..1503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8732.16837.1

>prot_E_fasciculatus_S2_contig8732.16837.1 ID=prot_E_fasciculatus_S2_contig8732.16837.1|Name=mRNA_E_fasciculatus_S2_contig8732.16837.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=119bp
NAEAFGQQRGSEARGQVQDDCNKLEELRVCHWLRSISRRVPDNDVILVAT
KCDLACGNTGDIGRRLEHACRTWLSSWLRNGKQAVRLEHGVCLTSCCPAA
VSEHGENTAGNHVSKGGWA
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mRNA from alignment at E_fasciculatus_S2_contig8732:1147..1503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8732.16837.1 ID=mRNA_E_fasciculatus_S2_contig8732.16837.1|Name=mRNA_E_fasciculatus_S2_contig8732.16837.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=357bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8732:1147..1503+ (Ectocarpus fasciculatus EfasUO2)
AACGCGGAGGCGTTCGGGCAGCAGCGAGGTAGCGAAGCCAGGGGTCAGGT
TCAGGATGACTGCAACAAGCTCGAAGAGTTGCGCGTTTGCCATTGGCTTC
GATCGATCTCTCGGCGCGTTCCCGATAACGACGTCATCCTCGTCGCTACC
AAGTGTGACTTGGCGTGCGGGAACACAGGGGACATCGGCAGAAGACTGGA
GCATGCCTGTCGAACGTGGCTTTCGAGCTGGCTGCGCAATGGTAAACAAG
CCGTTCGATTGGAGCACGGTGTTTGCCTGACGAGCTGCTGCCCGGCAGCA
GTAAGTGAGCATGGGGAGAACACCGCTGGGAACCACGTCTCGAAGGGAGG
ATGGGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8732:1147..1503+

>mRNA_E_fasciculatus_S2_contig8732.16837.1 ID=mRNA_E_fasciculatus_S2_contig8732.16837.1|Name=mRNA_E_fasciculatus_S2_contig8732.16837.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=357bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8732:1147..1503+ (Ectocarpus fasciculatus EfasUO2)
AACGCGGAGGCGTTCGGGCAGCAGCGAGGTAGCGAAGCCAGGGGTCAGGT
TCAGGATGACTGCAACAAGCTCGAAGAGTTGCGCGTTTGCCATTGGCTTC
GATCGATCTCTCGGCGCGTTCCCGATAACGACGTCATCCTCGTCGCTACC
AAGTGTGACTTGGCGTGCGGGAACACAGGGGACATCGGCAGAAGACTGGA
GCATGCCTGTCGAACGTGGCTTTCGAGCTGGCTGCGCAATGGTAAACAAG
CCGTTCGATTGGAGCACGGTGTTTGCCTGACGAGCTGCTGCCCGGCAGCA
GTAAGTGAGCATGGGGAGAACACCGCTGGGAACCACGTCTCGAAGGGAGG
ATGGGCG
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