mRNA_E_fasciculatus_S2_contig8676.16787.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8676.16787.1
Unique NamemRNA_E_fasciculatus_S2_contig8676.16787.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8676.16787.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUD4_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 1.850e-117
Identity = 353/532 (66.35%), Postives = 386/532 (72.56%), Query Frame = 3 
Query:    3 AKKGPSKTPGSSQKGGSAASKAAGTGTLRISTTSPKSPGSAGAKKGEVLQAGNSASSKAPNAPKGGPKIAKAPGSLGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNRGGAGTTKEVSLGAKGPPSNALTAK-VPPTKSSTSQKGVSAISGAAATVVPLGSTPNSTSPGNAGSKKGEASRAAKKAPPAAPSMSQKDKLKVSKTDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKTPGASQTGGATTSKPVGEAALQDPTPPSKNAGSARAKKGGVPPKVAHGPRESGFGDRSREHSGGEKEEGEIDVSMKARRRHVHGAAASMTSATNPNPAWKSRSPPVTGFSPPPPPRRGMNEERGGYFSVDAMRGREHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAFMSSANNPNPAWSSLSPPVTGFFPXXXXXRDMMNGEGGLDI---SMRGQENAAAASMSSANNPNPGWNSRSPPVTGF 1586
            AKK P+KT  SSQKGGS  S AAGTGTLRIST SPKSP SAG+K+GEV QAG SA SK  NAPK GPKIAKAPGSLGS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    K+RG AGTTK+VSLGAK PP+NA TAK VPP KSSTS+KGVS+ISGAAATV PLGSTPNS SPG+AG+KKGEA R AKK P AAP +SQKD+ KVSK DL                                        P T  ASQTGGATTSK  G+AAL  PTPPSK+A SA AKK GV PKVA+G RESGFGDRSR+H GGE EEGEID+ M+ARR H+HGAAA M+SA NPNPA  SRSPPVTG   PPPPRRGMNEER  Y S++AMR  EH  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA A +S  ++PNPAW+S+SPPVTG  P     R + NGEG +     +MR QE+++A SM SANNPN  WNS  PPVT F
Sbjct: 1413 AKKVPAKTSDSSQKGGSETSTAAGTGTLRISTPSPKSPRSAGSKQGEVSQAGKSALSKTSNAPKDGPKIAKAPGSLGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSTVAKKGLAGSSTGSTPISKSRGSAGTTKDVSLGAKSPPANAPTAKKVPPKKSSTSRKGVSSISGAAATVAPLGSTPNSKSPGSAGAKKGEAPRVAKKVPSAAPIVSQKDRSKVSKIDLAKTSSGATTSPKDPGTAGAKQNSVSQAVNKTSLAKV----PNTSSASQTGGATTSKAAGDAALLGPTPPSKSAVSASAKKDGVSPKVANGRRESGFGDRSRKHGGGENEEGEIDLYMEARRGHMHGAAAWMSSAINPNPALNSRSPPVTGVVIPPPPRRGMNEERAVYVSMEAMRRHEHAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAASLSFGHHPNPAWNSISPPVTGLVPPPPPRRGI-NGEGEVYHPMETMRRQEHSSATSMPSANNPNAAWNSIPPPVTRF 1939
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BLAST of mRNA_E_fasciculatus_S2_contig8676.16787.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG5_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 3.180e-115
Identity = 342/531 (64.41%), Postives = 376/531 (70.81%), Query Frame = 3 
Query:    3 AKKGPSKTPGSSQKGGSAASKAAGTGTLRISTTSPKSPGSAGAKKGEVLQAGNSASSKAPNAPKGGPKIAKAPGSLGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNRGGAGTTKEVSLGAKGPPSNALTAKVPPT-KSSTSQKGVSAISGAAATVVPLGSTPNSTSPGNAGSKKGEASRAAKKAPPAAPSMSQKDKLKVSKTDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKTPGASQTGGATTSKPVGEAALQDPTPPSKNAGSARAKKGGVPPKVAHGPRESGFGDRSREHSGGEKEEGEIDVSMKARRRHVHGAAASMTSATNPNPAWKSRSPPVTGFSPPPPPRRGMNEERGGYFSVDAMRGREHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAFMSSANNPNPAWSSLSPPVTGFFPXXXXXRDMMNGEGGLDI---SMRGQENAAAASMSSANNPNPGWNSRSPPVTG 1583
            AK+ PSKT GSSQKGGS  SKAAGTGTLRIST SPKSPGSAG+ +GEV QAG SA SKAPNAPK GPKIAKAPGSLGS XXXXXXXXXXXXXXXXXXXXXXXXX                            K+RG A  TK+VSLGAK P +NA         KS+TSQKGVS+ISGAAATV PL STPNS SPG+AG+KKGEA R AKKAPPAAPS+SQKD+ KVSK DL                                        PKT  ASQ GGATTSK  G+A L  PTP SK+AGSA AKKGGV PKV +G  ESGFGDRSREHSG E+EEGEID+SM+A+R H+HGAAA M+SATNPNPA  SRSPPVTG   PPPPRRGMNEER   FS++AMR  EH  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA A +S  ++PNPAW+S+SPPVTG  P     R + NGEG +     +M+ QE+A AASM SA NPN  W+S SPPVTG
Sbjct: 1237 AKRVPSKTSGSSQKGGSETSKAAGTGTLRISTPSPKSPGSAGSTQGEVSQAGKSALSKAPNAPKDGPKIAKAPGSLGSXXXXXXXXXXXXXXXXXXXXXXXXXXTPKTSQKERSTVAKKYLAGSSTGSTPISKSRGSADATKDVSLGAKSPTANAXXXXXXXXXKSNTSQKGVSSISGAAATVAPLDSTPNSKSPGSAGAKKGEAPRVAKKAPPAAPSVSQKDRSKVSKNDLAKTSSGATTSPKDPGTAGAKQKSVSQAVKKTSSLAKV---PKTSSASQIGGATTSKATGDAGLLGPTPSSKSAGSASAKKGGVSPKVVNGLHESGFGDRSREHSGSEREEGEIDLSMEAQRGHMHGAAAWMSSATNPNPALNSRSPPVTGCVVPPPPRRGMNEERAVNFSMEAMRRHEHGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAASISFGHHPNPAWNSISPPVTGLVPPPPPRRGI-NGEGEVYHPMEAMQRQEHAGAASMPSAKNPNAAWSSISPPVTG 1763
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8676.16787.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.850e-11766.35protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.180e-11564.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8676contigE_fasciculatus_S2_contig8676:1887..4799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2913
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_002880.1
Cds size1818
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842524.6747491-UTR-E_fasciculatus_S2_contig8676:1886..21581696842524.6747491-UTR-E_fasciculatus_S2_contig8676:1886..2158Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8676 1887..2158 +
1696842524.6993701-UTR-E_fasciculatus_S2_contig8676:3976..47991696842524.6993701-UTR-E_fasciculatus_S2_contig8676:3976..4799Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8676 3977..4799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842524.6900525-CDS-E_fasciculatus_S2_contig8676:2158..39761696842524.6900525-CDS-E_fasciculatus_S2_contig8676:2158..3976Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8676 2159..3976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8676.16787.1prot_E_fasciculatus_S2_contig8676.16787.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8676 2159..3976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8676.16787.1

>prot_E_fasciculatus_S2_contig8676.16787.1 ID=prot_E_fasciculatus_S2_contig8676.16787.1|Name=mRNA_E_fasciculatus_S2_contig8676.16787.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=606bp
MKGEVSQAAKAPSAAPKTFQKERSTVAKNDVAGSSTGSAPISKNRGGAGT
TKEVSLGAKGPPSNALTAKVPPTKSSTSQKGVSAISGAAATVVPLGSTPN
STSPGNAGSKKGEASRAAKKAPPAAPSMSQKDKLKVSKTDLAKTSSGATA
SSKDPGSAGAKKNSVSQAVKNTPSKALAKVPPKTPGASQTGGATTSKPVG
EAALQDPTPPSKNAGSARAKKGGVPPKVAHGPRESGFGDRSREHSGGEKE
EGEIDVSMKARRRHVHGAAASMTSATNPNPAWKSRSPPVTGFSPPPPPRR
GMNEERGGYFSVDAMRGREHTWNSRPTPVTGFAPPPPPRRGMNEEREVFL
SMEAMRRQEHAAPAFMSSANNPNPAWSSLSPPVTGFFPPPPPRRDMMNGE
GGLDISMRGQENAAAASMSSANNPNPGWNSRSPPVTGFFPPPPPRRGMNE
ERGVYSYFSVEAMRRHEHAWNSLSPPVPGDVPPPPPRRGKIGEGGIDPSM
EATQRQEHAAAASTSFAPTPNPASSQSQPVSGKFPPPPPQKGLPPGRNAR
RKARLRAEAEATSLCPPGRNAAKKARRKARLRAEAEATSLPASPEACDPV
THDPN*
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mRNA from alignment at E_fasciculatus_S2_contig8676:1887..4799+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8676.16787.1 ID=mRNA_E_fasciculatus_S2_contig8676.16787.1|Name=mRNA_E_fasciculatus_S2_contig8676.16787.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2913bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8676:1887..4799+ (Ectocarpus fasciculatus EfasUO2)
CCGCGAAGAAGGGACCATCGAAAACGCCCGGCTCGTCCCAGAAAGGCGGG
TCGGCGGCTTCCAAAGCTGCTGGGACGGGGACGCTGCGGATCTCAACGAC
TAGCCCGAAGAGCCCTGGGAGTGCGGGTGCAAAGAAGGGCGAGGTGTTAC
AGGCCGGGAATAGTGCATCCTCGAAGGCGCCGAATGCCCCAAAAGGTGGG
CCGAAGATTGCAAAAGCCCCCGGGTCGCTTGGCTCAACGCCCAGCTCCAC
CAGCCCAGGCAATACCGGTGGAATGAAGGGGGAGGTTTCACAAGCTGCAA
AGGCACCAAGCGCAGCACCCAAGACCTTCCAGAAAGAGCGGTCGACGGTC
GCGAAGAATGATGTGGCGGGATCTTCCACCGGCTCGGCGCCCATCTCCAA
GAATCGCGGTGGTGCAGGCACAACGAAGGAGGTATCACTAGGCGCCAAGG
GTCCGCCCTCAAACGCACTTACCGCGAAGGTGCCACCGACAAAGTCTAGC
ACATCGCAGAAAGGCGTGTCGGCTATTTCCGGAGCTGCCGCGACTGTGGT
GCCGTTGGGCTCAACGCCTAACTCCACGAGCCCTGGAAATGCGGGTTCGA
AGAAGGGCGAGGCGTCACGGGCCGCGAAGAAGGCGCCCCCGGCGGCGCCC
AGCATGTCCCAGAAAGACAAATTGAAGGTATCCAAGACCGATCTGGCGAA
AACGTCATCAGGCGCAACAGCCAGTTCCAAGGACCCCGGGAGCGCAGGTG
CCAAGAAGAACAGTGTATCACAGGCCGTCAAAAATACGCCCTCGAAGGCG
CTTGCGAAGGTACCCCCGAAGACGCCAGGTGCGTCCCAGACAGGCGGAGC
AACGACGTCCAAACCTGTGGGGGAAGCTGCCCTGCAGGACCCAACGCCTC
CCTCCAAGAACGCTGGTAGCGCACGCGCGAAGAAGGGCGGGGTACCACCA
AAGGTTGCCCATGGACCCCGTGAATCTGGTTTCGGGGATCGATCGCGGGA
GCACAGTGGGGGGGAGAAAGAAGAAGGAGAGATCGATGTCTCCATGAAGG
CACGCCGGAGGCACGTGCACGGTGCTGCTGCATCGATGACATCCGCGACC
AACCCTAACCCTGCATGGAAGTCACGATCGCCACCGGTGACAGGGTTTTC
CCCACCCCCACCACCCAGGCGGGGCATGAATGAGGAACGGGGGGGCTATT
TCTCGGTGGATGCGATGCGGGGACGCGAGCATACTTGGAACTCACGACCG
ACACCGGTGACAGGCTTTGCCCCACCCCCACCACCCAGGAGGGGCATGAA
TGAAGAAAGGGAGGTCTTCCTCTCGATGGAGGCGATGCGGAGGCAAGAGC
ATGCTGCACCTGCATTTATGTCATCTGCAAACAACCCCAACCCTGCATGG
AGCTCGCTATCGCCACCGGTGACGGGCTTTTTCCCACCCCCACCACCCAG
GAGGGACATGATGAACGGAGAAGGGGGGCTCGATATCTCGATGCGGGGCC
AAGAAAATGCCGCTGCTGCATCTATGTCATCTGCAAACAACCCCAACCCT
GGATGGAACTCACGATCGCCACCGGTGACAGGGTTTTTCCCACCCCCACC
ACCCAGGCGCGGCATGAATGAGGAACGGGGGGTCTATTCCTACTTCTCGG
TGGAGGCGATGCGGAGGCACGAGCACGCTTGGAACTCACTCTCGCCACCG
GTGCCAGGCGATGTCCCCCCTCCACCACCTAGGAGGGGCAAGATTGGAGA
AGGGGGGATCGATCCCTCGATGGAGGCGACGCAGAGGCAAGAGCATGCTG
CTGCTGCATCTACGTCATTCGCACCCACCCCCAACCCTGCTTCGTCACAA
TCGCAACCAGTGTCAGGCAAATTCCCACCCCCACCACCTCAGAAGGGATT
GCCCCCCGGGAGGAATGCCAGAAGAAAGGCACGCTTGAGGGCGGAGGCAG
AGGCGACAAGCCTTTGCCCCCCGGGAAGAAATGCCGCGAAGAAGGCCAGA
AGAAAGGCACGCTTGAGGGCGGAGGCAGAGGCGACAAGCCTGCCAGCATC
TCCAGAGGCCTGTGACCCCGTTACCCATGATCCGAACTAGAGTCGAAGTA
AGAGAAAGTAGGATCTAAGAACCTAGATGGCTTGTCACGCCCAAAGAGTG
ATACTTCTCCGAGACTATCTATTTGTTCCCTGTTCCTGAGGTGCTGCGGA
TGTAGAGGCTGAGTGAGGCCAAGGTTGCTTGGATCGGCATTCGCGGGTCC
AAGAAGCAAAGCAAGCGAATGGGGAGTGTCTTCGACCGCCATTTATGATT
GCAGTTGCACGCAGTGCTGTGTAGGTCACAATAGTAGACATAGGCAAAGG
TTGGTGTTATGAAGTACTGACAGTATTACCTTTCCCGTTCGGCATTTGCT
GCCATGGGCAGGTGGGGTGTTTGCTGTGTGTAATGTGATCTACTACCGTT
GCACCAATCCTGTGAGCATTGTTTCATGGATACACGTGTGTAGCTGTTCT
TTGAGCAGAGAGAAAAAGTGCCCGGTTCTCGACCCGTAGTCACGAACCGC
GTTGGGGATGTCTTGATCATCGTTTGGAAATGCGATACGATGGTTTGGCA
AACATGCACCCCTTCAACTTGATGCGGCATCAGACAGGATACTCGAGTTG
GTATAGTGGGCCTGGTGTCAACATTCACCTCTTTTCCCACACTCGTCATG
TCAGTAGGGTGTGTTGTCTTGCAAGCGCTGTGCCAAACATAATTGACAAT
CTCAGGACTCAATGCAAACGAGTGACGTCTTCTTTGGATGCATCTGGACT
CGTCCACCCGATCTCAGGCATGGTTGATCGCGAGAGGTACGAATATCACT
GCTAGTCTCCCAAAGATGGAAGAGGCCGATAAATTAGGAGTAGTTTATAT
GTATTTTTTCATT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8676:1887..4799+

>mRNA_E_fasciculatus_S2_contig8676.16787.1 ID=mRNA_E_fasciculatus_S2_contig8676.16787.1|Name=mRNA_E_fasciculatus_S2_contig8676.16787.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1818bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8676:1887..4799+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGGGGGAGGTTTCACAAGCTGCAAAGGCACCAAGCGCAGCACCCAA
GACCTTCCAGAAAGAGCGGTCGACGGTCGCGAAGAATGATGTGGCGGGAT
CTTCCACCGGCTCGGCGCCCATCTCCAAGAATCGCGGTGGTGCAGGCACA
ACGAAGGAGGTATCACTAGGCGCCAAGGGTCCGCCCTCAAACGCACTTAC
CGCGAAGGTGCCACCGACAAAGTCTAGCACATCGCAGAAAGGCGTGTCGG
CTATTTCCGGAGCTGCCGCGACTGTGGTGCCGTTGGGCTCAACGCCTAAC
TCCACGAGCCCTGGAAATGCGGGTTCGAAGAAGGGCGAGGCGTCACGGGC
CGCGAAGAAGGCGCCCCCGGCGGCGCCCAGCATGTCCCAGAAAGACAAAT
TGAAGGTATCCAAGACCGATCTGGCGAAAACGTCATCAGGCGCAACAGCC
AGTTCCAAGGACCCCGGGAGCGCAGGTGCCAAGAAGAACAGTGTATCACA
GGCCGTCAAAAATACGCCCTCGAAGGCGCTTGCGAAGGTACCCCCGAAGA
CGCCAGGTGCGTCCCAGACAGGCGGAGCAACGACGTCCAAACCTGTGGGG
GAAGCTGCCCTGCAGGACCCAACGCCTCCCTCCAAGAACGCTGGTAGCGC
ACGCGCGAAGAAGGGCGGGGTACCACCAAAGGTTGCCCATGGACCCCGTG
AATCTGGTTTCGGGGATCGATCGCGGGAGCACAGTGGGGGGGAGAAAGAA
GAAGGAGAGATCGATGTCTCCATGAAGGCACGCCGGAGGCACGTGCACGG
TGCTGCTGCATCGATGACATCCGCGACCAACCCTAACCCTGCATGGAAGT
CACGATCGCCACCGGTGACAGGGTTTTCCCCACCCCCACCACCCAGGCGG
GGCATGAATGAGGAACGGGGGGGCTATTTCTCGGTGGATGCGATGCGGGG
ACGCGAGCATACTTGGAACTCACGACCGACACCGGTGACAGGCTTTGCCC
CACCCCCACCACCCAGGAGGGGCATGAATGAAGAAAGGGAGGTCTTCCTC
TCGATGGAGGCGATGCGGAGGCAAGAGCATGCTGCACCTGCATTTATGTC
ATCTGCAAACAACCCCAACCCTGCATGGAGCTCGCTATCGCCACCGGTGA
CGGGCTTTTTCCCACCCCCACCACCCAGGAGGGACATGATGAACGGAGAA
GGGGGGCTCGATATCTCGATGCGGGGCCAAGAAAATGCCGCTGCTGCATC
TATGTCATCTGCAAACAACCCCAACCCTGGATGGAACTCACGATCGCCAC
CGGTGACAGGGTTTTTCCCACCCCCACCACCCAGGCGCGGCATGAATGAG
GAACGGGGGGTCTATTCCTACTTCTCGGTGGAGGCGATGCGGAGGCACGA
GCACGCTTGGAACTCACTCTCGCCACCGGTGCCAGGCGATGTCCCCCCTC
CACCACCTAGGAGGGGCAAGATTGGAGAAGGGGGGATCGATCCCTCGATG
GAGGCGACGCAGAGGCAAGAGCATGCTGCTGCTGCATCTACGTCATTCGC
ACCCACCCCCAACCCTGCTTCGTCACAATCGCAACCAGTGTCAGGCAAAT
TCCCACCCCCACCACCTCAGAAGGGATTGCCCCCCGGGAGGAATGCCAGA
AGAAAGGCACGCTTGAGGGCGGAGGCAGAGGCGACAAGCCTTTGCCCCCC
GGGAAGAAATGCCGCGAAGAAGGCCAGAAGAAAGGCACGCTTGAGGGCGG
AGGCAGAGGCGACAAGCCTGCCAGCATCTCCAGAGGCCTGTGACCCCGTT
ACCCATGATCCGAACTAG
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