mRNA_E_fasciculatus_S2_contig8602.16728.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8602.16728.1
Unique Name	mRNA_E_fasciculatus_S2_contig8602.16728.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8602.16728.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ5_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 8.400e-48
Identity = 92/105 (87.62%), Postives = 94/105 (89.52%), Query Frame = 3

Query:   63 SSSPGLYTPQPVPELQPNGPDVVRVQLRVGDSQRVVHSFRRSDPVTALFDVAAQALAKADGKELGSPFDVVAPGGRSLLKAGVVVVIPGTDGGDGDAATAAKPAG 377
            SS  GLYTPQPVPELQPNGPDVVRVQLRVG  QRVVHSFRRSDP+TALFDVAAQALAKADGK L SPFDVVAPGGR+LLKAGVVV  PGTDGGD   ATAAKPAG
Sbjct:  284 SSPAGLYTPQPVPELQPNGPDVVRVQLRVGGGQRVVHSFRRSDPLTALFDVAAQALAKADGKALPSPFDVVAPGGRALLKAGVVV--PGTDGGD--VATAAKPAG 384

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8602.16728.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8602.16728.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Ubiquitinyl	8.400e-48	87.62	hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8602	contig	E_fasciculatus_S2_contig8602:2259..4335 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	167.9
Seed ortholog evalue	2.9e-39
Seed eggNOG ortholog	2880.D8LDJ5
Preferred name	ATXN3
Model size	393
KEGG ko	ko:K11863
KEGG Pathway	ko04141,map04141
Hectar predicted targeting category	other localisation
GOs	GO:0000226,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006325,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007610,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010810,GO:0016020,GO:0016043,GO:0016234,GO:0016569,GO:0016570,GO:0016575,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0023052,GO:0030029,GO:0030036,GO:0030155,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031625,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033036,GO:0033554,GO:0034605,GO:0034641,GO:0034976,GO:0035520,GO:0035601,GO:0035640,GO:0035966,GO:0035967,GO:0036211,GO:0036459,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045103,GO:0045104,GO:0045732,GO:0045862,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0051788,GO:0060255,GO:0061136,GO:0061578,GO:0065007,GO:0070011,GO:0070013,GO:0070536,GO:0070646,GO:0070647,GO:0070887,GO:0070932,GO:0071108,GO:0071218,GO:0071310,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0098732,GO:0098916,GO:0099536,GO:0099537,GO:0101005,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1904327,GO:1904379,GO:1905897,GO:1905898,GO:1990380
Exons	3
EggNOG free text desc.	protein localization to cytosolic proteasome complex
EggNOG OGs	KOG2935@1,KOG2935@2759
Ec32 ortholog description	Ubiquitin-related domain
Ec32 ortholog	Ec-15_000320.1
Cds size	375
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko01002,ko04121

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842518.7351785-UTR-E_fasciculatus_S2_contig8602:2258..2275	1696842518.7351785-UTR-E_fasciculatus_S2_contig8602:2258..2275	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig8602 2259..2275 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842518.756068-CDS-E_fasciculatus_S2_contig8602:2275..2333	1696842518.756068-CDS-E_fasciculatus_S2_contig8602:2275..2333	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8602 2276..2333 +
1696842518.7734106-CDS-E_fasciculatus_S2_contig8602:3375..3440	1696842518.7734106-CDS-E_fasciculatus_S2_contig8602:3375..3440	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8602 3376..3440 +
1696842518.7840922-CDS-E_fasciculatus_S2_contig8602:4083..4335	1696842518.7840922-CDS-E_fasciculatus_S2_contig8602:4083..4335	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8602 4084..4335 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8602.16728.1	prot_E_fasciculatus_S2_contig8602.16728.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8602 2276..4335 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8602:2259..4335+
coding sequence from alignment at E_fasciculatus_S2_contig8602:2259..4335+

protein sequence of mRNA_E_fasciculatus_S2_contig8602.16728.1

>prot_E_fasciculatus_S2_contig8602.16728.1 ID=prot_E_fasciculatus_S2_contig8602.16728.1|Name=mRNA_E_fasciculatus_S2_contig8602.16728.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=125bp
MARAIALSLSQEESASSSPGLYTPQPVPELQPNGPDVVRVQLRVGDSQRV
VHSFRRSDPVTALFDVAAQALAKADGKELGSPFDVVAPGGRSLLKAGVVV
VIPGTDGGDGDAATAAKPAGGEESG

mRNA from alignment at E_fasciculatus_S2_contig8602:2259..4335+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8602.16728.1 ID=mRNA_E_fasciculatus_S2_contig8602.16728.1|Name=mRNA_E_fasciculatus_S2_contig8602.16728.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2077bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8602:2259..4335+ (Ectocarpus fasciculatus EfasUO2)
GCGAGGGGGAGGATGAGATGGCTCGTGCTATCGCGCTGTCGTTATCGCAA
GAAGAGTCGGCGTCGTCATCGCCAGGTGAATAGAGGGTCGTGGGTGGTGT
GTTTATTTCATGGCTTTTTTTTGTTGTTGGCCTATAGTCGCAGGCTGTTT
GATCCTTTTTACAGTATCTGGCGGGGGGAACGCCACATGTGTTTCGCATG
TGGTCAGACCCTTGGAGTACATCCCTGCGCGTAGTAACTGAGAGCTCGTG
TTTCGTCTACAAGTACGGTGCACCCTTTGTTGGCAAAAAGTGCTGCTGTT
CTGTCTGCTTTCTCACTCATATCGAACGTAGAGGATTCCTCTCTCGTACC
TATAGTAGCTCTCCACCCTGTACTGATTTTTGTGTGTAAATTCACGTTTT
TTTTGCACGGAAAATTGAAAACTCCCGTCTGTTGTGAATTCTTAACATTA
ACGGTTTCTATTTCCTGTCGAATTTTTGGTGTTAAGACATATCATGACTC
CTGGTGTCAGTTCTGGTCATTGACGTGCCGGTGGTTTATCGCTTGGAAGT
ACTTGGCATTCGTTTTTTTTTAGAAAGTTCATGCTGACGTTTTTTTGCGA
ATGGTTCGTGTCATGTTCGAGTCGAAGGCGTGCACGTCGGACTGACTGCA
ACGGAACCGAAGATAAAGGTCTTCTGGCATCGTCATTCCGAAGGCTGATA
CTACCCTAGCTGATTGCGTCCCATGTTCTTCCGTATCAGCCGAGAATATG
TATCTTAAGGAACCGCTGCCTTCCTACACCAGTGTGTGTCCTTACGTGTG
CGTGCTTCAAGGAGGAAGTGAAACTGTTAATAGAGGGAACGATAACGTCA
GTCGCCTTCGCAGAGTCTTTTTATTATGTAAACATGTCGGATGAAGCATT
CAGTCAGGGAAGTTGGGTTGGGGGCAGGGGCAGGGTTAGGGATAGGGTCT
GCGTACCCCCTCCCTGTTGTATTCCCTCATAAACTGAAATTCTCGCCAAG
ACGGTCCGACACAATAGGGTTTGTCTGTTCTCTGGTTTCGCTCAGACGAG
AGGGATGGGTCGCGTTGAGTCCTCCGACTGATTTATGTTCTGCATTCATC
GCCGTCGCTGCCTCCAGGCTTATACACGCCGCAACCGGTACCGGAGCTCC
AACCGAACGGCCCGGACGTAGTTCGCGTTCAGGTAAGCAAGCGGCTACGA
ATTTGTGCCCCCGGAAAGCCCTGTGCGATTATCATTGGAACTACTTCAAG
AGTCGTTCGTGTATTGCAGGTGACGCACTACTGTAGTGCCTCTTGAGGAA
CCGACTGCCAAGAAATCGAGGGTCGAGGTTTAGAATATTGGAAGTAGTGT
GCACGCAGGCAATTGTGATGTTCGGTTCGGAGCCCCCACCATGATATCAT
TGTAAAATTTACTCCCACTAGCTCACAAAGAGAGAAAGAAACCGAGGCCC
TAGACAATGAGAATAAGAATACCCATTCCGTGACATGGCGTGGGCCAGTT
GCGGTATGCGGGTCACCGGTGAACTGCCTTGGTGTCCTTGTACATATTTT
CGACTGGGGTTTGGGGGGAGCATCTCGCGTTGTTGGCCAAGTCTTTGTGC
TGACGATGGATACCTTTACATGTGGGTGTCACGCCGCCGCTGCGCGATTG
ATCACCCTGTCTAAATATGTCGGTGTACGTTGCATACGTTCCTCGCATAC
ACAACAGCGGTGCTGCAGGCGACAGACATGAAACATGAAACACACGTCCA
CAATAGCATGACCTCACCACTCCTAATTATCACCGTCGTCTGCCCTCGCC
GCCGTTTATTAAAAAACATAAACAGCTCCGAGTGGGGGACAGCCAGAGGG
TCGTCCATAGCTTCAGACGGTCCGATCCCGTCACGGCGCTGTTTGACGTG
GCGGCTCAAGCCCTCGCCAAGGCCGACGGCAAGGAGCTGGGTTCTCCCTT
CGACGTGGTAGCGCCAGGAGGACGGTCGCTGCTCAAGGCCGGGGTAGTTG
TAGTTATACCGGGCACCGATGGGGGTGATGGCGATGCAGCAACAGCAGCA
AAGCCGGCGGGGGGCGAGGAGAGTGGA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8602:2259..4335+

>mRNA_E_fasciculatus_S2_contig8602.16728.1 ID=mRNA_E_fasciculatus_S2_contig8602.16728.1|Name=mRNA_E_fasciculatus_S2_contig8602.16728.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=375bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8602:2259..4335+ (Ectocarpus fasciculatus EfasUO2)
ATGGCTCGTGCTATCGCGCTGTCGTTATCGCAAGAAGAGTCGGCGTCGTC
ATCGCCAGGCTTATACACGCCGCAACCGGTACCGGAGCTCCAACCGAACG
GCCCGGACGTAGTTCGCGTTCAGCTCCGAGTGGGGGACAGCCAGAGGGTC
GTCCATAGCTTCAGACGGTCCGATCCCGTCACGGCGCTGTTTGACGTGGC
GGCTCAAGCCCTCGCCAAGGCCGACGGCAAGGAGCTGGGTTCTCCCTTCG
ACGTGGTAGCGCCAGGAGGACGGTCGCTGCTCAAGGCCGGGGTAGTTGTA
GTTATACCGGGCACCGATGGGGGTGATGGCGATGCAGCAACAGCAGCAAA
GCCGGCGGGGGGCGAGGAGAGTGGA