mRNA_E_fasciculatus_S2_contig8601.16727.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8601.16727.1
Unique NamemRNA_E_fasciculatus_S2_contig8601.16727.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8601.16727.1 vs.
Match: Pheophorbide (a oxygenase, putative chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH5_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.600e-35
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 LQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG 168
            +QLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG
Sbjct:   66 VQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG 121
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BLAST of mRNA_E_fasciculatus_S2_contig8601.16727.1 vs.
Match: Rieske (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KID3_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.290e-29
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 LQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG 168
            ++L+GE LVVWKDPKD GWKAF D+CPHRWAPLSEGRV+QE+GRL CIYHGWEFEG
Sbjct:  147 VKLLGESLVVWKDPKDDGWKAFTDKCPHRWAPLSEGRVNQETGRLHCIYHGWEFEG 202
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BLAST of mRNA_E_fasciculatus_S2_contig8601.16727.1 vs.
Match: Accelerated (cell death 1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3X0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.870e-21
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 LQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG 168
            ++L+GE LV+W+D     W+A  DRCPHRWAPLSEG VD E  RL C YHGWEFEG
Sbjct:    1 VELLGEPLVLWQDSTKQ-WRAALDRCPHRWAPLSEGFVDPEQKRLTCAYHGWEFEG 55
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BLAST of mRNA_E_fasciculatus_S2_contig8601.16727.1 vs.
Match: Rieske (domain-containing protein n=2 Tax=Oryzeae TaxID=147380 RepID=A0A6G1DNG0_9ORYZ)

HSP 1 Score: 89.7 bits (221), Expect = 8.130e-20
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 LQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG 168
             QL+   LV+WKDPK G W A  DRCPHR APLSEGR+D E+G LQC YHGW F+G
Sbjct:   99 FQLLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRID-ETGCLQCSYHGWSFDG 153
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BLAST of mRNA_E_fasciculatus_S2_contig8601.16727.1 vs.
Match: Uncharacterized (protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VVV2_ZIZPA)

HSP 1 Score: 89.7 bits (221), Expect = 1.330e-19
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 LQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG 168
             QL+   LV+WKDPK G W A  DRCPHR APLSEGR+D E+G LQC YHGW F+G
Sbjct:  104 FQLLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRID-ETGCLQCSYHGWSFDG 158
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8601.16727.1 vs.
Match: Putative (cell death suppressor protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q947Y2_ORYSJ)

HSP 1 Score: 89.7 bits (221), Expect = 1.380e-19
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 LQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG 168
             QL+   LV+WKDPK G W A  DRCPHR APLSEGR+D E+G LQC YHGW F+G
Sbjct:   96 FQLLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRID-ETGCLQCSYHGWSFDG 150
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8601.16727.1 vs.
Match: Rieske (domain-containing protein n=22 Tax=PACMAD clade TaxID=147370 RepID=K4A8E1_SETIT)

HSP 1 Score: 89.7 bits (221), Expect = 1.410e-19
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 LQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG 168
             QL+   LV+WKDPK G W A  DRCPHR APLSEGR+D E+G LQC YHGW F+G
Sbjct:   97 FQLLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRID-ETGCLQCSYHGWSFDG 151
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8601.16727.1 vs.
Match: Pheophorbide (a oxygenase, chloroplastic n=16 Tax=Oryzeae TaxID=147380 RepID=PAO_ORYSJ)

HSP 1 Score: 89.7 bits (221), Expect = 1.410e-19
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 LQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG 168
             QL+   LV+WKDPK G W A  DRCPHR APLSEGR+D E+G LQC YHGW F+G
Sbjct:   99 FQLLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRID-ETGCLQCSYHGWSFDG 153
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8601.16727.1 vs.
Match: Rieske (domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1DMM4_9ORYZ)

HSP 1 Score: 89.7 bits (221), Expect = 1.410e-19
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 LQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG 168
             QL+   LV+WKDPK G W A  DRCPHR APLSEGR+D E+G LQC YHGW F+G
Sbjct:  100 FQLLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRID-ETGCLQCSYHGWSFDG 154
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8601.16727.1 vs.
Match: Pheophorbide (a oxygenase 2 n=5 Tax=Zingiberaceae TaxID=4642 RepID=A0A7T3U9F8_9LILI)

HSP 1 Score: 89.7 bits (221), Expect = 1.420e-19
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 LQLMGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWEFEG 168
             QL+   LV+WKDP  G W A  DRCPHR APLSEGR+D ESG LQC YHGW F+G
Sbjct:  106 FQLLNRDLVIWKDPNSGSWVALDDRCPHRLAPLSEGRID-ESGCLQCSYHGWSFDG 160
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8601.16727.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Pheophorbide3.600e-3598.21a oxygenase, putative chloroplast n=1 Tax=Ectocarp... [more]
Rieske2.290e-2982.14domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Accelerated5.870e-2164.29cell death 1 (Fragment) n=1 Tax=Tribonema minus Ta... [more]
Rieske8.130e-2066.07domain-containing protein n=2 Tax=Oryzeae TaxID=14... [more]
Uncharacterized1.330e-1966.07protein n=1 Tax=Zizania palustris TaxID=103762 Rep... [more]
Putative1.380e-1966.07cell death suppressor protein n=1 Tax=Oryza sativa... [more]
Rieske1.410e-1966.07domain-containing protein n=22 Tax=PACMAD clade Ta... [more]
Pheophorbide1.410e-1966.07a oxygenase, chloroplastic n=16 Tax=Oryzeae TaxID=... [more]
Rieske1.410e-1966.07domain-containing protein n=1 Tax=Oryza meyeriana ... [more]
Pheophorbide1.420e-1966.07a oxygenase 2 n=5 Tax=Zingiberaceae TaxID=4642 Rep... [more]

Pages

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8601contigE_fasciculatus_S2_contig8601:84..918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score128.3
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D7FSH5
Preferred namePAO
Model size171
KEGG rclassRC03394
KEGG koko:K13071
KEGG ReactionR08921
KEGG Pathwayko00860,ko01110,map00860,map01110
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006787,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009706,GO:0009791,GO:0009814,GO:0009816,GO:0009908,GO:0009941,GO:0009987,GO:0010154,GO:0015994,GO:0015996,GO:0016020,GO:0016491,GO:0016730,GO:0019439,GO:0019866,GO:0022414,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0032441,GO:0032501,GO:0032502,GO:0033013,GO:0033015,GO:0034641,GO:0042170,GO:0042440,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044270,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046149,GO:0046483,GO:0046700,GO:0048037,GO:0048367,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051186,GO:0051187,GO:0051536,GO:0051540,GO:0051704,GO:0051707,GO:0055114,GO:0061458,GO:0071704,GO:0090567,GO:0098542,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575
Exons2
EggNOG free text desc.pheophorbide a oxygenase activity
EggNOG OGs2QQ8U@2759,COG4638@1
EC1.14.15.17
Cds size162
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842518.6723256-CDS-E_fasciculatus_S2_contig8601:83..1801696842518.6723256-CDS-E_fasciculatus_S2_contig8601:83..180Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8601 84..180 -
1696842518.6909268-CDS-E_fasciculatus_S2_contig8601:844..9091696842518.6909268-CDS-E_fasciculatus_S2_contig8601:844..909Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8601 845..909 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842518.702543-UTR-E_fasciculatus_S2_contig8601:909..9181696842518.702543-UTR-E_fasciculatus_S2_contig8601:909..918Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8601 910..918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8601.16727.1prot_E_fasciculatus_S2_contig8601.16727.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8601 84..909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8601.16727.1

>prot_E_fasciculatus_S2_contig8601.16727.1 ID=prot_E_fasciculatus_S2_contig8601.16727.1|Name=mRNA_E_fasciculatus_S2_contig8601.16727.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=54bp
MGEGLVVWKDPKDGGWKAFADRCPHRWAPLSEGRVDQESGRLQCIYHGWE
FEG*
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mRNA from alignment at E_fasciculatus_S2_contig8601:84..918-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8601.16727.1 ID=mRNA_E_fasciculatus_S2_contig8601.16727.1|Name=mRNA_E_fasciculatus_S2_contig8601.16727.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=835bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8601:84..918- (Ectocarpus fasciculatus EfasUO2)
CTGCAGCTGATGGGAGAAGGATTGGTGGTGTGGAAAGACCCAAAAGATGG
TGGATGGAAAGCCTTCGCCGACAGGTGCCAGGTCGAAGGGCGATCGTTTC
TGTTCTTGTTGCGGCGCTGACCATGATGTGTTTTGTGCCAGCGTTTTTTG
GATGCGGTGCCGTAGATGTGCTGTTTACCGCAGTGTTGCCGTTCGATTTC
TTACGGTGTTGGTGGGTACTGAACGTTTAGCGTTGGCCGACTACGTGGTT
GACTTCGCGCGTGCGACCCATGGTCCACTCCCCCCGCTCCCCATGAATAG
TTCGAAAGCTTTTTGTCAGTACCGTCATACTGCTGTCGGTGTTACCTCTA
GATTGACTAGAGTGCTCCGTCTTGAAGAAGGCATGCACGGTTAGTGTTCC
AACGGCTTCAGGGAGGCAGCAAATGTCAACGCCGCCCCCCCCCCCACAGG
GGCATGTATATATGCTGCGCCCCTGCAGACGGGTAAATGACGATTCCGAC
AACAATGACGATAGTGATGTGATGATGGTGGTTGGGCAGGAACGGCGAGT
AAGTACTAATCGAACCACACCGGTGGTGTAAGGCAGGGTGAGGGGTGAGC
TGTTCGGATGCGGGTATTTTTGGGGTGGGTGGCCGTTTGATCGGGTCTTC
GCGCGACAATCTGACGCAACTTGATCCTGTAGGATGGAGGGGCAAGGATG
GTCGGTTTTGATGACCGATTGTGGCGAACCTTTTCCAGGTGTCCGCATCG
CTGGGCGCCCCTGTCGGAGGGGCGGGTCGATCAAGAGAGTGGGCGCTTGC
AGTGCATCTACCACGGCTGGGAGTTTGAAGGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8601:84..918-

>mRNA_E_fasciculatus_S2_contig8601.16727.1 ID=mRNA_E_fasciculatus_S2_contig8601.16727.1|Name=mRNA_E_fasciculatus_S2_contig8601.16727.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=162bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8601:84..918- (Ectocarpus fasciculatus EfasUO2)
ATGGGAGAAGGATTGGTGGTGTGGAAAGACCCAAAAGATGGTGGATGGAA
AGCCTTCGCCGACAGGTGTCCGCATCGCTGGGCGCCCCTGTCGGAGGGGC
GGGTCGATCAAGAGAGTGGGCGCTTGCAGTGCATCTACCACGGCTGGGAG
TTTGAAGGGTGA
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