mRNA_E_fasciculatus_S2_contig8581.16704.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8581.16704.1
Unique Name	mRNA_E_fasciculatus_S2_contig8581.16704.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8581.16704.1 vs.
Match: WD-40 (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.650e-47
Identity = 144/199 (72.36%), Postives = 147/199 (73.87%), Query Frame = 1

Query:    1 MSRLPSLRLSASELVEQLQAESSPSPRMPTTPASGSRGRFRSXXXXXXXX---------SNKFLSSTFSPSRSTGXXXXXXG-TTPSTLSPQRNNMRSRTESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRARPPAAAAXXXXXXX---EGLEEAEEAPYSPGPSGGVAGAGADLARRFFFGATAET 558
            MSRLPSLRLSASELVEQLQAESSPSPRMPT PASGSRGRFRS                 +NKFLSSTFSPSRSTG      G TTPSTLSPQRNN RSR    XXXXXX              XXXXXXXXXXXXXXXXX +R RPP+AAA   XXXX   EGLEEAEEAPYSPGPSGGVAGAGADLARRFFFGATAET
Sbjct: 2112 MSRLPSLRLSASELVEQLQAESSPSPRMPTAPASGSRGRFRSPGSTPHNAGTGTAAGSSNNKFLSSTFSPSRSTGVGGGGSGRTTPSTLSPQRNNTRSRXXXXXXXXXXVVSTGTLGPGSVFGXXXXXXXXXXXXXXXXXLVRGRPPSAAAGAAXXXXXXXEGLEEAEEAPYSPGPSGGVAGAGADLARRFFFGATAET 2310

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8581.16704.1 vs.
Match: UDENN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.310e-43
Identity = 132/201 (65.67%), Postives = 137/201 (68.16%), Query Frame = 1

Query:    1 MSRLPSLRLSASELVEQLQAESSPSPRMPTTPASGSRGRFRSXXXXXXXX---------SNKFLSSTFSPSRSTGXXXXXXG--TTPSTLSPQRNNMRSRTESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IRARPPAAAAXXXXXXXEG----LEEAEEAPYSPGPSGGVAGAGADLARRFFFGATAE 555
            +SRLPSLRLSASELVEQLQAESSPSPRMPTTPASGSRGRFRS                 +NKFLSSTFSPSRSTGXXXXXX   TTPSTLSPQRN+MRSRTES XXXXXXX                                +R R P+AAA   XXXX      LEEAEEAPYSPGPSGGVAGAGADLARRFFFGATAE
Sbjct: 2164 VSRLPSLRLSASELVEQLQAESSPSPRMPTTPASGSRGRFRSPGTTPHNPGTGTAAGSSNNKFLSSTFSPSRSTGXXXXXXSGRTTPSTLSPQRNHMRSRTESXXXXXXXXVVSTGTLGPGSVFGSGGRGRSMDAELSPRQPLVRGRLPSAAAGAGXXXXXXXXXXLEEAEEAPYSPGPSGGVAGAGADLARRFFFGATAE 2364

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8581.16704.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8581.16704.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
WD-40	1.650e-47	72.36	repeat protein n=1 Tax=Ectocarpus siliculosus TaxI...	[more]
UDENN	1.310e-43	65.67	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8581	contig	E_fasciculatus_S2_contig8581:1615..3137 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	179.9
Seed ortholog evalue	1.1e-42
Seed eggNOG ortholog	2880.D8LB83
Preferred name	SCD1
Model size	558
KEGG ko	ko:K03361,ko:K20164
KEGG Pathway	ko04111,ko04120,map04111,map04120
KEGG Module	M00407
Hectar predicted targeting category	other localisation
GOs	GO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons	2
EggNOG free text desc.	Rab guanyl-nucleotide exchange factor activity
EggNOG OGs	KOG0274@1,KOG0274@2759,KOG2127@1,KOG2127@2759
Cds size	558
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko04121,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842516.1123266-CDS-E_fasciculatus_S2_contig8581:1614..1730	1696842516.1123266-CDS-E_fasciculatus_S2_contig8581:1614..1730	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8581 1615..1730 +
1696842516.126345-CDS-E_fasciculatus_S2_contig8581:2695..3137	1696842516.126345-CDS-E_fasciculatus_S2_contig8581:2695..3137	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8581 2696..3137 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8581.16704.1	prot_E_fasciculatus_S2_contig8581.16704.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8581 1615..3137 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8581:1615..3137+
coding sequence from alignment at E_fasciculatus_S2_contig8581:1615..3137+

protein sequence of mRNA_E_fasciculatus_S2_contig8581.16704.1

>prot_E_fasciculatus_S2_contig8581.16704.1 ID=prot_E_fasciculatus_S2_contig8581.16704.1|Name=mRNA_E_fasciculatus_S2_contig8581.16704.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=186bp
MSRLPSLRLSASELVEQLQAESSPSPRMPTTPASGSRGRFRSPGTGTGAG
SNKFLSSTFSPSRSTGGGGGSGGTTPSTLSPQRNNMRSRTESPGGGGVVS
AGSTLGPGSMFGSGGGRGRLMEAELSPRRPLIRARPPAAAAAAAAASGEG
LEEAEEAPYSPGPSGGVAGAGADLARRFFFGATAET

mRNA from alignment at E_fasciculatus_S2_contig8581:1615..3137+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8581.16704.1 ID=mRNA_E_fasciculatus_S2_contig8581.16704.1|Name=mRNA_E_fasciculatus_S2_contig8581.16704.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1523bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8581:1615..3137+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCAGGCTTCCGTCGTTGAGGCTGAGCGCGTCGGAGCTGGTGGAGCA
GCTCCAGGCGGAGAGCAGCCCGTCGCCGAGGATGCCGACGACGCCGGCCT
CCGGGTCTCGAGGAAGGTGTGTGTGTATCGGTGAATCGATCGGTGTACTG
TAAGCAGACCGGCTGATAGTTTTTTGTTTTGTTTTTTACAGAAACGAAAC
ATCCGTGTGTGTTTTTTGTCGATCGGTGTAGACAAGACTGGCTGACAGTT
TTTTCTTTCTGTTATGAATGTACAACCAAAGCAACACTACCCGTTCTAGA
CATGACCATAGTCAAGGGGATGGGTTGAAGTCTTCCAGAAGCGAAAAAAA
TTCGTGAGGTCTTCTTGTATTTTTCAAACACGAAACAGACAGGCTAGCAT
TTCTGCTTTGGCTAGAAGCGGAACATTTTTCGTGTTTTTGTGTTTTTTCA
AAAAACGAAACAATTATCCATCTCTATTGTCCAGAATGTTTTGTTTCCTG
TTGGGCCAAGGAAGGCACACGTGGGGGCGAAAATAGACCAGATTTTTATG
ATGTTATGTCCTCTTGTGGTGGAAAGAGTCAAGGCTTCGGGCGATCACCG
ACCGGCACCGGCTGCACGGCGGGGACGAGGGCTAGCTTGAGGCTTGGCTC
CGTGCTGTTGTTTATTTCTAGTTTTTTGTGTCGCGATTGTCGGCGGCGGG
GGCGTGCGATCGTGTGTGTCTTGCCACAGTTTAAAAATATATATATTATT
CGGTGGCAAGCAGTTATTTTTCTCCTCTTTTCTCCCCTTCCCATCCTACC
CTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCG
CCCTCCCCCCCCCCGCGCCCGACCACCCCCCAGGCCCCCCCGGGGGGTGT
GGGTGGTTGTTGTTTTTCCCAATTTTTAAAAAATTTATTTTTTTTCTTGG
GCACCCTGTTTTTTTTTCCCCTTTTTCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCGCCCTTACCTCACCTCCCTTTGTTGGCCTGCTCTC
CACCATCCTGCATTACGCGCCGCCGCACAAGGTTCCGATCGCCGGGCACC
GGTACCGGTGCCGGCAGCAACAAGTTCCTCTCCTCCACGTTCAGCCCGTC
CAGAAGCACCGGCGGTGGCGGCGGCAGCGGTGGAACAACTCCCTCCACCC
TCTCCCCGCAACGGAATAACATGCGCTCGCGAACAGAGTCGCCCGGGGGG
GGCGGGGTTGTATCTGCCGGTAGTACTTTGGGGCCTGGGTCCATGTTCGG
CAGCGGCGGCGGCCGGGGGCGGTTGATGGAGGCGGAACTGTCACCGCGAC
GTCCCCTCATCCGAGCGAGGCCGCCCGCGGCGGCGGCGGCGGCGGCCGCC
GCTAGCGGAGAGGGGCTGGAAGAAGCGGAAGAGGCGCCGTACTCGCCGGG
TCCCTCCGGCGGGGTGGCGGGGGCCGGGGCGGACCTTGCGAGGCGTTTCT
TCTTCGGCGCGACGGCGGAGACG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8581:1615..3137+

>mRNA_E_fasciculatus_S2_contig8581.16704.1 ID=mRNA_E_fasciculatus_S2_contig8581.16704.1|Name=mRNA_E_fasciculatus_S2_contig8581.16704.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=558bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8581:1615..3137+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCAGGCTTCCGTCGTTGAGGCTGAGCGCGTCGGAGCTGGTGGAGCA
GCTCCAGGCGGAGAGCAGCCCGTCGCCGAGGATGCCGACGACGCCGGCCT
CCGGGTCTCGAGGAAGGTTCCGATCGCCGGGCACCGGTACCGGTGCCGGC
AGCAACAAGTTCCTCTCCTCCACGTTCAGCCCGTCCAGAAGCACCGGCGG
TGGCGGCGGCAGCGGTGGAACAACTCCCTCCACCCTCTCCCCGCAACGGA
ATAACATGCGCTCGCGAACAGAGTCGCCCGGGGGGGGCGGGGTTGTATCT
GCCGGTAGTACTTTGGGGCCTGGGTCCATGTTCGGCAGCGGCGGCGGCCG
GGGGCGGTTGATGGAGGCGGAACTGTCACCGCGACGTCCCCTCATCCGAG
CGAGGCCGCCCGCGGCGGCGGCGGCGGCGGCCGCCGCTAGCGGAGAGGGG
CTGGAAGAAGCGGAAGAGGCGCCGTACTCGCCGGGTCCCTCCGGCGGGGT
GGCGGGGGCCGGGGCGGACCTTGCGAGGCGTTTCTTCTTCGGCGCGACGG
CGGAGACG