mRNA_E_fasciculatus_S2_contig8564.16692.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8564.16692.1
Unique NamemRNA_E_fasciculatus_S2_contig8564.16692.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8564.16692.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV8_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 5.690e-38
Identity = 75/81 (92.59%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:    1 GGGGGNDSAARSRSVDDLEKLVVSVATRGMHQALQYGLRNTFFTLLRKKDQEIAELKEEALRWSANDTHLRQINRQLRNDN 243
            GG GGN SAARSRSVDDLEKLVVSVATRGMHQAL YGLRNTF TLLRKK+QEIAELKEEALRWSANDTHLRQINRQL NDN
Sbjct:  630 GGVGGNGSAARSRSVDDLEKLVVSVATRGMHQALHYGLRNTFVTLLRKKEQEIAELKEEALRWSANDTHLRQINRQLLNDN 710
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8564.16692.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.690e-3892.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8564contigE_fasciculatus_S2_contig8564:172..844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size245
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842514.819967-CDS-E_fasciculatus_S2_contig8564:173..2691696842514.819967-CDS-E_fasciculatus_S2_contig8564:173..269Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8564 174..269 -
1696842514.8321621-CDS-E_fasciculatus_S2_contig8564:697..8441696842514.8321621-CDS-E_fasciculatus_S2_contig8564:697..844Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8564 698..844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8564.16692.1prot_E_fasciculatus_S2_contig8564.16692.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8564 174..844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8564.16692.1

>prot_E_fasciculatus_S2_contig8564.16692.1 ID=prot_E_fasciculatus_S2_contig8564.16692.1|Name=mRNA_E_fasciculatus_S2_contig8564.16692.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=81bp
GGGGGNDSAARSRSVDDLEKLVVSVATRGMHQALQYGLRNTFFTLLRKKD
QEIAELKEEALRWSANDTHLRQINRQLRNDN
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mRNA from alignment at E_fasciculatus_S2_contig8564:172..844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8564.16692.1 ID=mRNA_E_fasciculatus_S2_contig8564.16692.1|Name=mRNA_E_fasciculatus_S2_contig8564.16692.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=673bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8564:172..844- (Ectocarpus fasciculatus EfasUO2)
GGTGGTGGCGGCGGCAACGATAGCGCGGCAAGGTCGAGGTCGGTCGACGA
TCTGGAGAAGCTGGTGGTGAGCGTGGCTACCAGGGGGATGCACCAAGCCC
TGCAGTACGGCCTGCGGAACACGTTCTTCACGCTTCTTCGCAAGAAGGTG
GGGGGTGGGGGGTGGTATCTAGCGCAGCGGTGTTTTTTGTTTGCACGATT
GTACGGCCGAAGGGTTCTTTGGGTGCACTTGAGCCGGAGGCGACATGCGA
CGCGCACAGAACCGCCCTTGCGACGCCGTGTGTCGTTTGTCTCACGCCAG
AAGTCTCGCTTTATGTCTGCGCGGTTGCGTCGTTTTTATTACCCCTCCAT
ATGCATATACCGACCCTCTTCATCGTGGAGTAGTGGAGCTTTGAGAATCG
ATCCGGGGGGGAGGGAGTCTTGTGTCTACTACGGTACACATATGCGGAGC
TGAATTGCTCAAAACATGTTTCGCCGTGTGTGTGTGTGTATGTCATACAT
ATTGGTTCACTCGGTTCACTTTACTTTTACTTCGTGCTGTTCGTTGCCTA
AAACAAAAAAAAACAAAAAAAACAGGACCAAGAGATCGCCGAACTGAAAG
AGGAGGCGCTTCGGTGGTCGGCGAACGATACGCACCTGAGGCAGATCAAC
CGCCAGCTCCGCAACGACAACGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8564:172..844-

>mRNA_E_fasciculatus_S2_contig8564.16692.1 ID=mRNA_E_fasciculatus_S2_contig8564.16692.1|Name=mRNA_E_fasciculatus_S2_contig8564.16692.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=243bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8564:172..844- (Ectocarpus fasciculatus EfasUO2)
GGTGGTGGCGGCGGCAACGATAGCGCGGCAAGGTCGAGGTCGGTCGACGA
TCTGGAGAAGCTGGTGGTGAGCGTGGCTACCAGGGGGATGCACCAAGCCC
TGCAGTACGGCCTGCGGAACACGTTCTTCACGCTTCTTCGCAAGAAGGAC
CAAGAGATCGCCGAACTGAAAGAGGAGGCGCTTCGGTGGTCGGCGAACGA
TACGCACCTGAGGCAGATCAACCGCCAGCTCCGCAACGACAAC
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