mRNA_E_fasciculatus_S2_contig8560.16690.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8560.16690.1
Unique NamemRNA_E_fasciculatus_S2_contig8560.16690.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8560.16690.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT2_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.110e-49
Identity = 264/364 (72.53%), Postives = 266/364 (73.08%), Query Frame = 2 
Query:  155 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPPVADDRAXXXXXXXXXXXXXXXXXRSAFSPAVSDYAGVFEAGFDPAQVRASMSKEVVEVGQSGAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEGCWEEDCRGEVEEEEEVEEDFLFDMEGLKETTFXXXXXXXXXXXXXXXXXXXXXXXXXXSGMRATAAADAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAHCGT--------TTAKTA---GLSPGAXXXXXXXXGRGGPREGSYAGFKGAALLRTPRVIAPRGTRCVAGGMYRLRLSTSC 1213
            MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYP YDSPP      XXXXXXXXXXXX     RSAFSPAVSDYAGVFEAGFDPAQVRASMSKEVVEVGQ+GAPA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         FDMEGLKETT XXXXXXXXXXXXXXXXXXXXXXXXXX                 XXXXXXXXXXXXXXXXX        GA C          TTA+TA   GLSP            G   E S AGFKGAALLRTPRVIAPRGTRCV GGMYRLRLSTSC
Sbjct:    1 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPQYDSPPAXXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQVRASMSKEVVEVGQAGAPAAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXFDMEGLKETTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXEVEGRNNAGAPCRGVVPQQQEGTTARTAAGRGLSPAEAAAG------GAACEVSCAGFKGAALLRTPRVIAPRGTRCVTGGMYRLRLSTSC 345
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8560.16690.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.760e-32
Identity = 82/94 (87.23%), Postives = 82/94 (87.23%), Query Frame = 2 
Query:  155 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPPVADDRAXXXXXXXXXXXXXXXXXRSAFSPAVSDYAGVFEAGFDPAQ 436
            MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSP       XXXXXXXXXXXX     RSAFSPAVSDYAGVFEAGFDPAQ
Sbjct:    1 MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPXXXXXXXXXXXXXXXXXXXVSSGGRSAFSPAVSDYAGVFEAGFDPAQ 94
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8560.16690.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.110e-4972.53protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.760e-3287.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8560contigE_fasciculatus_S2_contig8560:2922..4816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1724
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_002120.1
Cds size1062
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842514.6878085-UTR-E_fasciculatus_S2_contig8560:2921..30251696842514.6878085-UTR-E_fasciculatus_S2_contig8560:2921..3025Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8560 2922..3025 +
1696842514.6980927-UTR-E_fasciculatus_S2_contig8560:3196..32461696842514.6980927-UTR-E_fasciculatus_S2_contig8560:3196..3246Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8560 3197..3246 +
1696842514.716201-UTR-E_fasciculatus_S2_contig8560:4308..48161696842514.716201-UTR-E_fasciculatus_S2_contig8560:4308..4816Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8560 4309..4816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842514.706921-CDS-E_fasciculatus_S2_contig8560:3246..43081696842514.706921-CDS-E_fasciculatus_S2_contig8560:3246..4308Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8560 3247..4308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8560.16690.1prot_E_fasciculatus_S2_contig8560.16690.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8560 3247..4308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8560.16690.1

>prot_E_fasciculatus_S2_contig8560.16690.1 ID=prot_E_fasciculatus_S2_contig8560.16690.1|Name=mRNA_E_fasciculatus_S2_contig8560.16690.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=354bp
MFALRSSPSSLVCDIRDGWAATSTAVLSAPRPRRASVRLIYPHYDSPPVA
DDRATTTTDGEDGGSASSGGGRSAFSPAVSDYAGVFEAGFDPAQVRASMS
KEVVEVGQSGAPAAAAAAAAAAAARAAEAAALVAEERRAFAADGGGGASD
SGEWRDDDGGSRGQQQAAARSTAAAVAAGEGCWEEDCRGEVEEEEEVEED
FLFDMEGLKETTFFEDQQQQEEEDNNNSNRRDSSSSGSSSGMRATAAADA
GYGRGRGGWGTTTTAAAAEAEAPAEVKGRGVGAHCGTTTAKTAGLSPGAA
AAAAAAGGRGGPREGSYAGFKGAALLRTPRVIAPRGTRCVAGGMYRLRLS
TSC*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8560:2922..4816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8560.16690.1 ID=mRNA_E_fasciculatus_S2_contig8560.16690.1|Name=mRNA_E_fasciculatus_S2_contig8560.16690.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1895bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8560:2922..4816+ (Ectocarpus fasciculatus EfasUO2)
CACACATACAACACACGACTTGCAACAACGCTCGTTCTCTCTCGGCCCAG
AACGGAAAACCACCAGCGAGTGTTTCTTTGGTGCGGTTCGTCAGCGATCA
CCAGGTTTGTCTCTCTCTGTCTCTCTCGCTGTTGCTACCCCCGGAGGGTT
TTTCGCTTCAAGAAAGAGGAGGCAGGCAGGCGAAACGAACGTCGCGGAAC
ACAACAACAACAACAACCCACAAGCTGCTCTCTCTCCCGTGTTCTATCTT
CTCTCCCTGTCTCTCTGTGCTCCAGGCCTGCAACGCCGCCGCTTCGCCTC
GCCTCGCCTCGCCTCGACGTCGACCATGTTCGCCCTGCGCTCCTCTCCCT
CCTCCCTGGTGTGCGACATCCGCGACGGCTGGGCCGCTACGTCCACCGCC
GTGCTCTCCGCCCCGCGCCCGCGGCGCGCCTCGGTCAGGCTCATCTACCC
GCACTACGACTCGCCGCCGGTGGCCGACGACCGAGCTACCACTACAACTG
ACGGCGAGGATGGTGGAAGCGCCAGCAGCGGCGGGGGCAGGAGCGCCTTC
TCTCCGGCCGTCTCTGACTACGCGGGCGTCTTCGAGGCCGGCTTCGACCC
CGCCCAGGTGAGGGCTTCGATGTCTAAGGAGGTGGTTGAGGTTGGCCAGT
CGGGCGCGCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGCTAGG
GCAGCAGAGGCTGCTGCTCTGGTGGCCGAGGAACGACGAGCGTTCGCGGC
CGACGGCGGCGGCGGCGCGAGCGACAGCGGGGAGTGGCGCGACGACGACG
GAGGCAGCCGCGGCCAGCAGCAGGCGGCGGCCCGCAGCACAGCAGCAGCG
GTGGCTGCGGGAGAAGGTTGTTGGGAAGAGGACTGCCGCGGCGAGGTGGA
GGAGGAGGAGGAGGTGGAGGAAGACTTTCTGTTCGATATGGAAGGGTTGA
AGGAGACGACTTTTTTTGAGGACCAGCAGCAGCAGGAGGAGGAGGACAAC
AATAATAGCAACCGCCGCGACAGCAGTAGCAGTGGCAGCAGCAGCGGCAT
GCGCGCCACTGCCGCCGCTGATGCTGGGTACGGCAGGGGTCGGGGGGGCT
GGGGTACGACCACGACAGCGGCGGCGGCGGAGGCGGAGGCGCCTGCCGAG
GTCAAGGGACGCGGCGTCGGCGCCCACTGCGGCACAACAACGGCAAAAAC
CGCCGGTCTATCTCCTGGCGCTGCTGCTGCTGCTGCTGCTGCAGGGGGAA
GGGGAGGGCCGCGCGAGGGGTCTTACGCCGGGTTCAAGGGCGCCGCGCTG
CTGCGCACGCCACGGGTGATCGCTCCCCGGGGGACGCGGTGCGTGGCCGG
GGGGATGTACAGGCTGAGGCTCAGCACGTCTTGCTGATGAGTTACCTGCT
GCTGCTGTCAAATCGGAGGTGATGGTGGTGTACTATTTGCGTAAGAATTC
TGAGACGCGGACGGGGTTCTGGCTCTCTCTCTCTCTCTCTCTCTGCTGTC
TTCATACCGCTGTACTGCTGTATGAGCGAGATATGCATATATGTGGTCGT
TTTGTCTGTGGGCCCGAAGCACATGTAGACTGACTACCTTGTAGTCATTG
CCCTTTATGAAAAAATTAAAAGCAATTGGCTAGCCGGGATGTGTTGTTTT
GTGTGACATAAGTCGTCGTCTGTGGGTGCGTCGTCGTATTTTTGTTTTTG
GTGTTGGATGATGGTTTGACTATACTATGCATAAGTGCTTACAAGTAGTA
GTATTTCCGCCCCTTTGCCTTGTGCGCTTTGCTCTCTCGCTCGAGAGCCA
TGCATGCCCCCCTGTCTATCTCCCCTGCATGCGGCACGCCTCTTGCTCGG
GCATATTTTTCTCGTTATTCGCGTGTGTGAGATATCTCGCACTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8560:2922..4816+

>mRNA_E_fasciculatus_S2_contig8560.16690.1 ID=mRNA_E_fasciculatus_S2_contig8560.16690.1|Name=mRNA_E_fasciculatus_S2_contig8560.16690.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1062bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8560:2922..4816+ (Ectocarpus fasciculatus EfasUO2)
ATGTTCGCCCTGCGCTCCTCTCCCTCCTCCCTGGTGTGCGACATCCGCGA
CGGCTGGGCCGCTACGTCCACCGCCGTGCTCTCCGCCCCGCGCCCGCGGC
GCGCCTCGGTCAGGCTCATCTACCCGCACTACGACTCGCCGCCGGTGGCC
GACGACCGAGCTACCACTACAACTGACGGCGAGGATGGTGGAAGCGCCAG
CAGCGGCGGGGGCAGGAGCGCCTTCTCTCCGGCCGTCTCTGACTACGCGG
GCGTCTTCGAGGCCGGCTTCGACCCCGCCCAGGTGAGGGCTTCGATGTCT
AAGGAGGTGGTTGAGGTTGGCCAGTCGGGCGCGCCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCGGCTAGGGCAGCAGAGGCTGCTGCTCTGGTGG
CCGAGGAACGACGAGCGTTCGCGGCCGACGGCGGCGGCGGCGCGAGCGAC
AGCGGGGAGTGGCGCGACGACGACGGAGGCAGCCGCGGCCAGCAGCAGGC
GGCGGCCCGCAGCACAGCAGCAGCGGTGGCTGCGGGAGAAGGTTGTTGGG
AAGAGGACTGCCGCGGCGAGGTGGAGGAGGAGGAGGAGGTGGAGGAAGAC
TTTCTGTTCGATATGGAAGGGTTGAAGGAGACGACTTTTTTTGAGGACCA
GCAGCAGCAGGAGGAGGAGGACAACAATAATAGCAACCGCCGCGACAGCA
GTAGCAGTGGCAGCAGCAGCGGCATGCGCGCCACTGCCGCCGCTGATGCT
GGGTACGGCAGGGGTCGGGGGGGCTGGGGTACGACCACGACAGCGGCGGC
GGCGGAGGCGGAGGCGCCTGCCGAGGTCAAGGGACGCGGCGTCGGCGCCC
ACTGCGGCACAACAACGGCAAAAACCGCCGGTCTATCTCCTGGCGCTGCT
GCTGCTGCTGCTGCTGCAGGGGGAAGGGGAGGGCCGCGCGAGGGGTCTTA
CGCCGGGTTCAAGGGCGCCGCGCTGCTGCGCACGCCACGGGTGATCGCTC
CCCGGGGGACGCGGTGCGTGGCCGGGGGGATGTACAGGCTGAGGCTCAGC
ACGTCTTGCTGA
back to top