mRNA_E_fasciculatus_S2_contig8516.16649.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8516.16649.1
Unique NamemRNA_E_fasciculatus_S2_contig8516.16649.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8516.16649.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X0_9PHAE)

HSP 1 Score: 576 bits (1485), Expect = 4.210e-193
Identity = 400/598 (66.89%), Postives = 420/598 (70.23%), Query Frame = 1 
Query:  580 MDDDRAGSTPGRPPLPSLGGATTSSWSSGT--DARSSRGARNGGRIVRRGSRVGRGRRP-SLLSDXXXXXXXXXXXRSISGAISSCSSGRSS-LRLVGSRTAGRGQSTGGGGRSPASPLGRAPRPPVPSHPWERRYNDDDVEQRRWRPAARQHPLLVRWSDPRLELIGSRPRDNSSNSCCHDSACDSGGT--------WACPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARHGGPSPSSSDGHDGIDRYLSFPGVSPTSGPESANDRSSALRNRDGGFSSRFEAVGGGIFNVLPQEKAMLPPSGNHSRRNPQVLNLVDVNAGSQAVHRTLAAGDAGAGAGASKRTPEERAYLRRAGLDDFSSTASSVGSCPFVHATAASRLAAAVKTXXXXXXXXXXXXXXXXXXXXXXENTESMPGLVTPTSPAAGSLTSFDTAGXXXXXXXXXXXXXXXXXXXXXXXLGPPKDNVSFLYSWPSLPDSVPAEETFRAAGSTPASAAVKNNGDIYSHAGDDYGSGASGGGEKGDTAPGKGGRGRGGEEVVLPPSAEDTSERSSSSNSPNRSNFGSD-SYSGSDRSVWEDEAEEEEGGWVG 2334
            MDDDRAGSTP +PPLPS GGATTSS SS +  DA SSRGAR GGRIVRRGSRVGRGRRP SL SDXXXXXXX    RS+SGAISSCSSGRSS LRLVGS  AG  QSTG    SPASPLG+APRPP PSHP ERR   DD + RRWRPAARQHPLLVR SDPRLE I  RP D+S                       WAC  XXXXX                            SARH  PSPSS DGHD IDRYLS  GVSPTS PE A+DRSS LR RDGGFS RF+AVGGG+ +VLPQEKAMLPPSG HSRR+ QVLNLVDVNAG +AVH   AA +  AGAGASKRTPEERAYLRRAGLDDFSSTASSVGSCP V ATA                     XXXXXXXXXX ENT SMPGLVTPTSPAAGSL SFDT G                       LGPPKDNVSFLYSWPSLPDS PAEETFRAAG+TPA AAV NNG + +H GDDYGSGA+ GGEK DTAPGKG  GRGGEEVVL PSA D SERSSS NSPNRSNFGSD +YSGS RSVW +EAEE+  GWVG
Sbjct:    1 MDDDRAGSTPIQPPLPSSGGATTSSLSSSSEADAGSSRGARKGGRIVRRGSRVGRGRRPHSLQSDXXXXXXXNLRGRSVSGAISSCSSGRSSSLRLVGSLAAGGDQSTGXXXXSPASPLGQAPRPPAPSHPLERRNEVDDGQHRRWRPAARQHPLLVRLSDPRLERIDHRPVDSSXXXXXXXXXXXXXXXXXXXXXXRWACXXXXXXXDGSVSTASYVDEEEDC------------SARHDSPSPSS-DGHDDIDRYLSLQGVSPTSRPERADDRSSTLRMRDGGFSPRFDAVGGGVISVLPQEKAMLPPSGKHSRRDLQVLNLVDVNAGRRAVHNGTAAAE-DAGAGASKRTPEERAYLRRAGLDDFSSTASSVGSCPLVKATA---------------------XXXXXXXXXXAENTGSMPGLVTPTSPAAGSLKSFDTTGGGLPPPAFEPLPARRAAV-----LGPPKDNVSFLYSWPSLPDSAPAEETFRAAGATPA-AAVNNNGGVCTHIGDDYGSGAAAGGEKLDTAPGKGRWGRGGEEVVLSPSANDASERSSS-NSPNRSNFGSDDNYSGSGRSVWGNEAEED--GWVG 554
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8516.16649.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.210e-19366.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8516contigE_fasciculatus_S2_contig8516:5..3932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size2334
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004960.1
Cds size2334
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842510.756153-CDS-E_fasciculatus_S2_contig8516:4..21751696842510.756153-CDS-E_fasciculatus_S2_contig8516:4..2175Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8516 5..2175 -
1696842510.7666972-CDS-E_fasciculatus_S2_contig8516:3769..39321696842510.7666972-CDS-E_fasciculatus_S2_contig8516:3769..3932Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8516 3770..3932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8516.16649.1prot_E_fasciculatus_S2_contig8516.16649.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8516 5..3932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8516.16649.1

>prot_E_fasciculatus_S2_contig8516.16649.1 ID=prot_E_fasciculatus_S2_contig8516.16649.1|Name=mRNA_E_fasciculatus_S2_contig8516.16649.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=778bp
MSSSNLAWTSSASGAILPTAKPVDVYAYRGTWLAGLETTTDRSVSPPPCH
EVVVAQHAQISGSRYGSCPDFRRALCNDDDDTTLETKPLPGRDTDLHPSE
ATTNPLLPPAMAPSPSSPSPGENTRASTSSLTVKGSAAAAAAATAAGRAA
SATTDDNRVAEPTPPSASSSSSSSFSFDDTASGGAGGGIEPLEMDDDRAG
STPGRPPLPSLGGATTSSWSSGTDARSSRGARNGGRIVRRGSRVGRGRRP
SLLSDDDDDQQQILRRRSISGAISSCSSGRSSLRLVGSRTAGRGQSTGGG
GRSPASPLGRAPRPPVPSHPWERRYNDDDVEQRRWRPAARQHPLLVRWSD
PRLELIGSRPRDNSSNSCCHDSACDSGGTWACPSSGGGGGGGGGSGGGGG
SVSTASYVDEEEEEEQRSARHGGPSPSSSDGHDGIDRYLSFPGVSPTSGP
ESANDRSSALRNRDGGFSSRFEAVGGGIFNVLPQEKAMLPPSGNHSRRNP
QVLNLVDVNAGSQAVHRTLAAGDAGAGAGASKRTPEERAYLRRAGLDDFS
STASSVGSCPFVHATAASRLAAAVKTTSASAASAAAAAAAAAAAAAAAEN
TESMPGLVTPTSPAAGSLTSFDTAGGGGLPPPAFEPLPARRRAAAAAALG
PPKDNVSFLYSWPSLPDSVPAEETFRAAGSTPASAAVKNNGDIYSHAGDD
YGSGASGGGEKGDTAPGKGGRGRGGEEVVLPPSAEDTSERSSSSNSPNRS
NFGSDSYSGSDRSVWEDEAEEEEGGWVG
back to top

mRNA from alignment at E_fasciculatus_S2_contig8516:5..3932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8516.16649.1 ID=mRNA_E_fasciculatus_S2_contig8516.16649.1|Name=mRNA_E_fasciculatus_S2_contig8516.16649.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3928bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8516:5..3932- (Ectocarpus fasciculatus EfasUO2)
ATGTCTAGCTCCAACCTCGCCTGGACATCCTCGGCGTCTGGGGCAATTCT
ACCGACAGCGAAGCCGGTGGACGTGTACGCCTATCGAGGGACTTGGCTCG
CCGGGCTGGAAACAACGACAGACCGCAGCGTATCCCCGCCTCCTTGCCAC
GAGGTGGTCGTAGGTGAGAGCGCAGAGAGGAGTCGTCGGGCCAGAAGAGA
GAGAACAAGCTGCCGTTCCCGATGTTTGCAACGAGATTGTATATGCATAG
CTATGTAGTCTCTAGGTAGGGCGTTTTGTTGTGTCTCCTTTAGACACAGC
GAGAGCGCAGGGATGAAAAGTTGACTTTCGTCGTTCATGAGGTCCGCTTG
TTCTTCCCGCCTCCCTTGCCATGATGAAGTTGTCGTAGGTGTGAGAGCGA
AGAGAGGGAAGTCCGGCCAGCAGAGAGAGAACAACACTGGCTTTCCCAAT
CTTTGCACCGAGATGCAGCTAGGGCGTTGTGTTGTGCCGTTGTGCTTCCT
GTAGAAAACAGCGAGAGGTTGGGGACGAAAAGTTGACCCTCTTCGTCGTT
CATGATGAGGTCCGCTTGTTCTTCAAAACGAATTTCAAAAATCGTCGCAG
CAGAGCGGCAGTTGGCAGTTGGTCGCTTTTTCGTCGCGAGCGAACAGCAT
CTAGTCTACGGGCAGTTGTAGTCCACCATCCTAAGCTGTGGATGATCTAG
AGTGCGTTCCCACTTGGGCTTGGCGGGAAGTATTCTGCCTCTTCCTCCTC
TCAAGCCGATGCAAATGCTACACCGGCAGCAGCACCGCACAACTATCTAT
GCACATCGATACACTGGAAACACCGAGCTGTTTTGTGAAGAAACAGGATC
TGAATGAACGGCGATGGACACCCAAGTTTTTTCGCAACGGAAAACGCGCG
GGTCTTTCGCGCCCCCGCGTGTTCGACATTTATAACTGATCCACCGCCGT
CGCACGTGACCCGCCAATCAATACTCTAGTGCTCCTGGTGCTTCTCTTTT
CGTACTAAACATTCGAGCTCAGTGATGTACACTGCAGCAAGGAGTGGTTG
TACTTCGTAGTACAATATGCATACGTCCTGACCCTCCTTTTTCGGGAAGG
GTGAGAAGAAAAAACAAACGCCGATTTCATATTTCTTGGTAGTTTGATAC
ATGGCAGAAAAAGGCACCACCCCCCCCCGCGCTGGTTTATATGCATACGG
AATGCCGGCCTGGGTCTGCTGCTTCGTTGTTGTGTGCTCGTTCTTCCCAG
CCTTCGTTTTGCTCTGGCTCCAGCGCGCCCACAGAACTATTCCAAATTGA
TGCTCTCTTATAGTATAGGAGTATCCTACAGCTTGCTCTGCGGGTAGGTG
CGGTGTTGATACATATGTGCCACAGCACACACCCACCCCTACCGGTAGAC
CCGTAGTTAGTGCAGCCAGATTGTATGTACGCTGCTGTTAGTGTAGGCTC
TCGTACCGCGTGTATGTACCTCGTACCCGCCGGTCATGGGCCACACGCAT
ATCTAGGTACGGAGGAGAGACAGGCGTGTATGCACAGGCTCTTGCTTGGT
GCGGTTTTATATAGGTGTGCGTTGGTTCGTTGGGCGAGCTGAAGAAATCG
AAATAAGGCGGGGTTTACGCTGGATGTGGACCGGGTACAAGTGCACTGAT
TCTTGGTCTCGGCGTATGTGCCTACTGCAGATAGATAGACCCCCCTCAGA
CGTTGCCAACACCCCCTCCTCCCCCCACCTGCACGCGCCGCGCCCATTCC
CCTCCAGCCCAACACGCGCAGATTTCTGGTTCCCGTTACGGCTCGTGTCC
GGACTTTCGCCGCGCCCTCTGCAACGACGACGACGATACCACCCTCGAGA
CGAAACCACTCCCCGGGCGAGACACCGACCTCCACCCCTCCGAGGCAACA
ACAAATCCCTTGCTTCCACCAGCCATGGCTCCATCGCCCTCCTCCCCCTC
GCCTGGCGAAAACACTCGGGCGTCGACGTCATCACTCACCGTCAAGGGGT
CAGCGGCGGCGGCAGCGGCAGCAACAGCAGCCGGTCGGGCGGCATCAGCG
ACCACCGACGACAACAGAGTCGCCGAACCAACTCCACCGTCCGCCTCCTC
CTCCTCCTCCTCCTCCTTCTCTTTTGACGACACCGCTAGTGGAGGGGCGG
GAGGCGGCATCGAGCCGCTAGAGATGGACGACGACCGGGCGGGGTCGACA
CCCGGACGGCCTCCCTTGCCCTCCTTGGGGGGAGCAACAACATCGTCGTG
GTCGTCGGGAACCGACGCCCGGAGCAGCAGGGGGGCGAGAAACGGCGGCA
GGATCGTCCGCCGAGGTTCCAGAGTCGGTCGGGGCCGCAGGCCTAGCCTG
CTGTCCGATGACGATGATGATCAGCAACAAATCCTACGGCGAAGAAGCAT
CAGCGGAGCCATCAGCAGCTGCAGCAGCGGTCGTAGCAGCCTGAGATTGG
TGGGGTCGCGGACGGCGGGCCGGGGCCAAAGCACCGGCGGCGGGGGGAGA
AGCCCCGCGTCCCCGCTCGGCCGGGCCCCCAGACCCCCGGTCCCGTCACA
CCCGTGGGAGCGCCGCTACAACGACGACGATGTCGAGCAGCGGCGGTGGC
GGCCAGCGGCGCGGCAGCATCCTCTGTTGGTGAGATGGTCGGACCCCAGG
CTGGAACTGATCGGCTCCCGGCCGCGCGACAACAGCAGCAACAGCTGTTG
CCACGACAGCGCCTGCGACAGCGGGGGCACCTGGGCGTGTCCGTCGAGCG
GCGGCGGCGGTGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCAGCGTG
TCGACTGCCTCCTACGTCGACGAAGAAGAAGAAGAAGAACAACGTTCGGC
GCGCCACGGCGGCCCCTCTCCCTCCTCCTCCGACGGCCACGATGGCATCG
ACCGCTACCTGTCGTTCCCGGGCGTAAGTCCCACCTCTGGGCCTGAGAGT
GCGAACGACAGAAGCAGCGCGCTAAGGAATCGCGACGGCGGTTTCTCATC
CCGGTTTGAAGCCGTCGGCGGCGGGATCTTTAATGTGCTCCCGCAGGAGA
AAGCTATGCTTCCGCCGAGCGGCAACCACTCCCGAAGAAACCCGCAGGTG
TTGAACCTCGTCGACGTCAACGCAGGGAGTCAGGCAGTCCACAGAACCCT
GGCAGCAGGCGATGCCGGCGCCGGCGCCGGCGCCTCGAAAAGAACACCGG
AGGAACGCGCGTACCTCAGGCGTGCCGGGCTGGACGACTTCTCCTCGACC
GCCAGCTCCGTCGGCTCGTGTCCATTCGTCCACGCCACGGCGGCGTCCCG
CCTCGCCGCCGCTGTCAAGACCACCTCCGCCTCTGCCGCTTCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCCGAGAACACCGAA
TCGATGCCAGGCCTCGTCACCCCGACATCGCCGGCCGCGGGATCATTGAC
ATCGTTCGACACGGCAGGCGGTGGCGGGTTGCCGCCACCGGCGTTCGAAC
CGCTGCCGGCGAGGAGGCGCGCGGCCGCCGCCGCCGCTCTTGGCCCTCCC
AAGGACAACGTGTCGTTCCTGTACTCGTGGCCCAGCTTGCCGGACAGCGT
TCCGGCGGAGGAGACATTTCGTGCGGCCGGTTCGACGCCCGCCTCCGCCG
CCGTCAAGAACAACGGTGACATCTACAGCCACGCTGGAGACGACTACGGC
AGCGGTGCGTCGGGCGGCGGCGAGAAAGGGGACACCGCGCCGGGAAAAGG
GGGACGCGGGCGGGGCGGCGAAGAAGTGGTCCTTCCGCCGAGCGCGGAGG
ACACGAGCGAGCGCAGCAGCAGCAGCAACAGCCCGAATCGCAGCAACTTC
GGCAGCGACAGCTATTCCGGCTCGGACCGGTCTGTGTGGGAAGATGAAGC
CGAGGAGGAGGAGGGTGGGTGGGTGGGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8516:5..3932-

>mRNA_E_fasciculatus_S2_contig8516.16649.1 ID=mRNA_E_fasciculatus_S2_contig8516.16649.1|Name=mRNA_E_fasciculatus_S2_contig8516.16649.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2334bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8516:5..3932- (Ectocarpus fasciculatus EfasUO2)
ATGTCTAGCTCCAACCTCGCCTGGACATCCTCGGCGTCTGGGGCAATTCT
ACCGACAGCGAAGCCGGTGGACGTGTACGCCTATCGAGGGACTTGGCTCG
CCGGGCTGGAAACAACGACAGACCGCAGCGTATCCCCGCCTCCTTGCCAC
GAGGTGGTCGTAGCCCAACACGCGCAGATTTCTGGTTCCCGTTACGGCTC
GTGTCCGGACTTTCGCCGCGCCCTCTGCAACGACGACGACGATACCACCC
TCGAGACGAAACCACTCCCCGGGCGAGACACCGACCTCCACCCCTCCGAG
GCAACAACAAATCCCTTGCTTCCACCAGCCATGGCTCCATCGCCCTCCTC
CCCCTCGCCTGGCGAAAACACTCGGGCGTCGACGTCATCACTCACCGTCA
AGGGGTCAGCGGCGGCGGCAGCGGCAGCAACAGCAGCCGGTCGGGCGGCA
TCAGCGACCACCGACGACAACAGAGTCGCCGAACCAACTCCACCGTCCGC
CTCCTCCTCCTCCTCCTCCTCCTTCTCTTTTGACGACACCGCTAGTGGAG
GGGCGGGAGGCGGCATCGAGCCGCTAGAGATGGACGACGACCGGGCGGGG
TCGACACCCGGACGGCCTCCCTTGCCCTCCTTGGGGGGAGCAACAACATC
GTCGTGGTCGTCGGGAACCGACGCCCGGAGCAGCAGGGGGGCGAGAAACG
GCGGCAGGATCGTCCGCCGAGGTTCCAGAGTCGGTCGGGGCCGCAGGCCT
AGCCTGCTGTCCGATGACGATGATGATCAGCAACAAATCCTACGGCGAAG
AAGCATCAGCGGAGCCATCAGCAGCTGCAGCAGCGGTCGTAGCAGCCTGA
GATTGGTGGGGTCGCGGACGGCGGGCCGGGGCCAAAGCACCGGCGGCGGG
GGGAGAAGCCCCGCGTCCCCGCTCGGCCGGGCCCCCAGACCCCCGGTCCC
GTCACACCCGTGGGAGCGCCGCTACAACGACGACGATGTCGAGCAGCGGC
GGTGGCGGCCAGCGGCGCGGCAGCATCCTCTGTTGGTGAGATGGTCGGAC
CCCAGGCTGGAACTGATCGGCTCCCGGCCGCGCGACAACAGCAGCAACAG
CTGTTGCCACGACAGCGCCTGCGACAGCGGGGGCACCTGGGCGTGTCCGT
CGAGCGGCGGCGGCGGTGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGC
AGCGTGTCGACTGCCTCCTACGTCGACGAAGAAGAAGAAGAAGAACAACG
TTCGGCGCGCCACGGCGGCCCCTCTCCCTCCTCCTCCGACGGCCACGATG
GCATCGACCGCTACCTGTCGTTCCCGGGCGTAAGTCCCACCTCTGGGCCT
GAGAGTGCGAACGACAGAAGCAGCGCGCTAAGGAATCGCGACGGCGGTTT
CTCATCCCGGTTTGAAGCCGTCGGCGGCGGGATCTTTAATGTGCTCCCGC
AGGAGAAAGCTATGCTTCCGCCGAGCGGCAACCACTCCCGAAGAAACCCG
CAGGTGTTGAACCTCGTCGACGTCAACGCAGGGAGTCAGGCAGTCCACAG
AACCCTGGCAGCAGGCGATGCCGGCGCCGGCGCCGGCGCCTCGAAAAGAA
CACCGGAGGAACGCGCGTACCTCAGGCGTGCCGGGCTGGACGACTTCTCC
TCGACCGCCAGCTCCGTCGGCTCGTGTCCATTCGTCCACGCCACGGCGGC
GTCCCGCCTCGCCGCCGCTGTCAAGACCACCTCCGCCTCTGCCGCTTCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCCGAGAAC
ACCGAATCGATGCCAGGCCTCGTCACCCCGACATCGCCGGCCGCGGGATC
ATTGACATCGTTCGACACGGCAGGCGGTGGCGGGTTGCCGCCACCGGCGT
TCGAACCGCTGCCGGCGAGGAGGCGCGCGGCCGCCGCCGCCGCTCTTGGC
CCTCCCAAGGACAACGTGTCGTTCCTGTACTCGTGGCCCAGCTTGCCGGA
CAGCGTTCCGGCGGAGGAGACATTTCGTGCGGCCGGTTCGACGCCCGCCT
CCGCCGCCGTCAAGAACAACGGTGACATCTACAGCCACGCTGGAGACGAC
TACGGCAGCGGTGCGTCGGGCGGCGGCGAGAAAGGGGACACCGCGCCGGG
AAAAGGGGGACGCGGGCGGGGCGGCGAAGAAGTGGTCCTTCCGCCGAGCG
CGGAGGACACGAGCGAGCGCAGCAGCAGCAGCAACAGCCCGAATCGCAGC
AACTTCGGCAGCGACAGCTATTCCGGCTCGGACCGGTCTGTGTGGGAAGA
TGAAGCCGAGGAGGAGGAGGGTGGGTGGGTGGGG
back to top