mRNA_E_fasciculatus_S2_contig851.16645.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig851.16645.1
Unique NamemRNA_E_fasciculatus_S2_contig851.16645.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig851.16645.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX9_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 8.470e-38
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:   94 EGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMTFSSDATYRGSFGGNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFFNGMYDNGRAKVALR 435
            EGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEM FSSDA+YRGSF G  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DFFNGMYDNGRAKVALR
Sbjct:   18 EGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMIFSSDASYRGSFAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFFNGMYDNGRAKVALR 131
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BLAST of mRNA_E_fasciculatus_S2_contig851.16645.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6S0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.180e-17
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:   28 EQAPPEPETGEGKFVFPNGAVYEGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMTFSSDATYRGSF 252
            E + PE E+GEG F F +G+ YEGQY   DGV++RNG+GT T G +   GEW  D +HG G   F+S ATY G F
Sbjct:   57 EPSEPEEESGEGLFTFVDGSRYEGQYATEDGVRRRNGYGTLTQGPETSEGEWVSDKLHGVGRCAFASGATYEGGF 131
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BLAST of mRNA_E_fasciculatus_S2_contig851.16645.1 vs.
Match: Hypothetical (protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SY57_9SPIT)

HSP 1 Score: 69.7 bits (169), Expect = 3.020e-12
Identity = 31/73 (42.47%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   19 SDEEQAPPEPETGEGKFVFPNGAVYEGQYIVIDGVKKRNGFGTHTNGKDK---YIGEWQLDSMHGQGEMTFSS 228
            ++E+  P EP+ G+G F+ P+G+ Y+G +I++DGV++R+G G + +G  K   Y GEWQ D MHG+G   ++S
Sbjct:   11 AEEDSEPFEPQEGKGAFLLPDGSKYDGDWIIVDGVRQRHGHGLYIDGIVKGQSYQGEWQNDKMHGRGVFRYAS 83
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BLAST of mRNA_E_fasciculatus_S2_contig851.16645.1 vs.
Match: Hypothetical (protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWQ0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.640e-10
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   55 GEGKFVFPNGAVYEGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMTFSSDA 234
            G+  F F NG+ YEG++I ID VK R+GFG      +KY G W  D+M G GE TF+S A
Sbjct:   19 GKSIFNFSNGSKYEGEWISIDNVKYRHGFGIFIGNNEKYEGNWDNDNMDGYGEYTFASGA 78
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BLAST of mRNA_E_fasciculatus_S2_contig851.16645.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CPM1_CAFRO)

HSP 1 Score: 62.8 bits (151), Expect = 1.280e-9
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   61 GKFVFPNGAVYEGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMTFSSDATYRG 246
            GKFVF +GAVYEG++       +R+G G++++G + Y G W+ D MHG+GE   ++ AT+ G
Sbjct:   24 GKFVFGDGAVYEGEFRETSAGVQRHGEGSYSDGAETYTGSWESDEMHGRGEYRSATGATFVG 85
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BLAST of mRNA_E_fasciculatus_S2_contig851.16645.1 vs.
Match: MORN (repeat-containing protein 2 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LVS0_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 2.920e-7
Identity = 32/92 (34.78%), Postives = 45/92 (48.91%), Query Frame = 1 
Query:   49 ETGEGKFVFPNGAVYEGQYIVI-------DGVKK---------------------RNGFGTHTNGKDKYIGEWQLDSMHGQGEMTFSSDATY 240
            E+G G+F +P+G+ YEG Y V+       +G +K                     R+G GT+T G   Y G+WQ D+M GQG   F+S A Y
Sbjct:   21 ESGSGRFFYPDGSTYEGDYRVVNVLPAAPEGPRKSSXXXXXXXXXXXPAEPPKRVRHGNGTYTCGAYSYAGDWQEDAMQGQGRFQFASGAVY 112
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BLAST of mRNA_E_fasciculatus_S2_contig851.16645.1 vs.
Match: Uncharacterized (protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KBC7_PHYPA)

HSP 1 Score: 53.1 bits (126), Expect = 8.620e-6
Identity = 29/90 (32.22%), Postives = 44/90 (48.89%), Query Frame = 1 
Query:   52 TGEGKFVFPNGAVYEGQYIVI----DGV------------------------KKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMTFSSDAT 237
            +G GKF +P GA YEG ++V+    +GV                        ++R+G G + +G  +Y GEW+ D MHGQG   + S A+
Sbjct:   27 SGAGKFFYPTGATYEGDWVVVAEVDEGVPATPXXXXXXXXXXHPPLEQMRPNRQRHGKGVYIDGNYQYNGEWKYDKMHGQGCFKYESGAS 116
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig851.16645.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Uncharacterized8.470e-3894.74protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical3.180e-1752.00protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical3.020e-1242.47protein n=1 Tax=Strombidinopsis acuminata TaxID=14... [more]
Hypothetical3.640e-1050.00protein n=1 Tax=Chromulina nebulosa TaxID=96789 Re... [more]
Uncharacterized1.280e-943.55protein n=1 Tax=Cafeteria roenbergensis TaxID=3365... [more]
MORN2.920e-734.78repeat-containing protein 2 n=1 Tax=Monoraphidium ... [more]
Uncharacterized8.620e-632.22protein n=2 Tax=Physcomitrium patens TaxID=3218 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig851contigE_fasciculatus_S2_contig851:12253..13844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score74.7
Seed ortholog evalue4e-11
Seed eggNOG ortholog157072.XP_008862129.1
Model size438
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-27_006760.1
Cds size438
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842510.4254692-CDS-E_fasciculatus_S2_contig851:12252..123461696842510.4254692-CDS-E_fasciculatus_S2_contig851:12252..12346Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig851 12253..12346 +
1696842510.443386-CDS-E_fasciculatus_S2_contig851:12599..127131696842510.443386-CDS-E_fasciculatus_S2_contig851:12599..12713Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig851 12600..12713 +
1696842510.4562209-CDS-E_fasciculatus_S2_contig851:13421..135451696842510.4562209-CDS-E_fasciculatus_S2_contig851:13421..13545Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig851 13422..13545 +
1696842510.4675653-CDS-E_fasciculatus_S2_contig851:13738..138441696842510.4675653-CDS-E_fasciculatus_S2_contig851:13738..13844Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig851 13739..13844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig851.16645.1prot_E_fasciculatus_S2_contig851.16645.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig851 12253..13844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig851.16645.1

>prot_E_fasciculatus_S2_contig851.16645.1 ID=prot_E_fasciculatus_S2_contig851.16645.1|Name=mRNA_E_fasciculatus_S2_contig851.16645.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=146bp
MGDNRDSDEEQAPPEPETGEGKFVFPNGAVYEGQYIVIDGVKKRNGFGTH
TNGKDKYIGEWQLDSMHGQGEMTFSSDATYRGSFGGNKFHGEGRYEWNDG
ATYEGGWRENKMHGKGCYSDNENSRWEGDFFNGMYDNGRAKVALR*
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mRNA from alignment at E_fasciculatus_S2_contig851:12253..13844+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig851.16645.1 ID=mRNA_E_fasciculatus_S2_contig851.16645.1|Name=mRNA_E_fasciculatus_S2_contig851.16645.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1592bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig851:12253..13844+ (Ectocarpus fasciculatus EfasUO2)
ATGGGCGACAACAGAGACAGCGACGAAGAACAGGCGCCTCCAGAGCCCGA
GACAGGAGAAGGAAAATTCGTGTTTCCGAACGGCGCGGTGTATGGTGAGA
AGAGGACACCGGCACTCACTCATGGCATGACTGACTCATGGCATCACATT
TATTACGCTTGATCACCGAATGAAGTATGACGCCGACGGCTCCCTCAGCG
AGTGCAGAACTCTCGCACTTAAAATTTGACGTGACATTGAACTGCTCCAT
CTACTCGTTCGGGGCAACTGTGTTGAGGAAGTGTGACAAACGGGCATGCA
AGAGGTCTGCTACCGTTCATGCAATCATTATCGTATCTTGCTTACAGAGG
GACAATACATTGTGATCGATGGCGTCAAGAAGCGAAATGGCTTTGGCACG
CACACAAACGGAAAGGACAAATACATCGGAGAGTGGCAGCTCGACTCAAT
GCACGGTCAAGGTAAGAAAAAATAGTCCTGTGTGGGTAGCAAACGAAAGC
GGTTGTTGTCCAGGCTATTTTGTTGCGTACAAGAAAGCAAGGGTTCGTTT
TTGTCAGAGAAAAAAGGACTAAAGGCATGTCACATGCCTAAAGAGCTGCA
ATCTACATCTTGTGCAGGGACGTCCACGGGAGTCATGGTGTATTCCCTTC
GTTCTTGTACGGGCATCCGGCCGATGATCTAGAGAATCAACATGACACTC
TACAGTAATCTCGTATAATTTTCTGCGGGCCGCCAACGCGGGGTTACGAC
ACACCAGCGCTGGGTACTTCTCCACTACATACATATATATATATGCTGTT
ACGTGGGAAACGCCCTGCTTTGTAACGTTCCCCCCAAGGCAATGGGAAAA
TTCCGGCGTGACCTTCCACCCGTGTTACCCTACATAGCTGGCGCGTACGC
ATGCGTTCTGAAAAAGAAAGAATGGAATAAAAGCGCACGCCGCCTCCCTA
CCCACCCCCACCCATTACAGGAACCACCTTCAGGCTCCGTGTGGTTGAAT
TCATTCCACATTGAGCAGGAGCGACTCTGCAGCAAACAACACACAAAGAG
CTGAACAGTTGAAATAATGGTGACCAGCCTGCACTCGTGCGATACGTGTA
TATTCTTGAGGAGGCACTTCAGTTGCTACCTAAAACTAACGAAACTGCCC
GCGGTGTCGTCTCCTTCAGGCGAGATGACATTTTCCTCGGACGCCACCTA
CCGGGGCTCTTTCGGAGGCAACAAGTTCCACGGTGAAGGGCGGTACGAGT
GGAACGATGGCGCTACCTATGAGGGTGGCTGGAGAGAGAACAAGTAAGGC
CGCGCTGCAACGCTGCAGAAAACCCCTTGTTTGGTCGCGCGATGTGTTAA
CAACACCGTCGATTGGCGAAAGCGTTGAATGACACTAGTTGGCCACCCTA
CTAGAGTACCATGTGTTAACAATAACACCGTCGAGAGCGAAAGCGTTGGA
TGACACCGCCATTCCGTGCCTAACTACGCCGAGCAGGATGCATGGGAAGG
GGTGTTACTCGGACAACGAGAACAGTCGTTGGGAGGGAGACTTCTTCAAC
GGGATGTACGACAACGGTCGCGCGAAGGTGGCTCTTCGCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig851:12253..13844+

>mRNA_E_fasciculatus_S2_contig851.16645.1 ID=mRNA_E_fasciculatus_S2_contig851.16645.1|Name=mRNA_E_fasciculatus_S2_contig851.16645.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=438bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig851:12253..13844+ (Ectocarpus fasciculatus EfasUO2)
ATGGGCGACAACAGAGACAGCGACGAAGAACAGGCGCCTCCAGAGCCCGA
GACAGGAGAAGGAAAATTCGTGTTTCCGAACGGCGCGGTGTATGAGGGAC
AATACATTGTGATCGATGGCGTCAAGAAGCGAAATGGCTTTGGCACGCAC
ACAAACGGAAAGGACAAATACATCGGAGAGTGGCAGCTCGACTCAATGCA
CGGTCAAGGCGAGATGACATTTTCCTCGGACGCCACCTACCGGGGCTCTT
TCGGAGGCAACAAGTTCCACGGTGAAGGGCGGTACGAGTGGAACGATGGC
GCTACCTATGAGGGTGGCTGGAGAGAGAACAAGATGCATGGGAAGGGGTG
TTACTCGGACAACGAGAACAGTCGTTGGGAGGGAGACTTCTTCAACGGGA
TGTACGACAACGGTCGCGCGAAGGTGGCTCTTCGCTGA
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