mRNA_E_fasciculatus_S2_contig849.16618.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig849.16618.1
Unique NamemRNA_E_fasciculatus_S2_contig849.16618.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Presumed (helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.700e-40
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 2
Query:    2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREAS 247
            QYRMHPEIRAFPSARFY GRLTDAPCVRDQAAIPA SPSSETT   ALP LGPCFPPFLLVDVSSGSERRAG+SYQNPREAS
Sbjct:  481 QYRMHPEIRAFPSARFYNGRLTDAPCVRDQAAIPAQSPSSETT---ALPPLGPCFPPFLLVDVSSGSERRAGSSYQNPREAS 559          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: AAA_12 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 7.230e-34
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 2
Query:   23 IRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREAS 247
            + A  SARFY GRLTDAPCVRDQAAIPAPSPSSE TG  ALP LGPCFPPFLLVDVSSGSERRAG+SYQNPREAS
Sbjct:    9 VPAGSSARFYNGRLTDAPCVRDQAAIPAPSPSSEATGPLALPPLGPCFPPFLLVDVSSGSERRAGSSYQNPREAS 83          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLJ6_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 7.000e-12
Identity = 37/83 (44.58%), Postives = 43/83 (51.81%), Query Frame = 2
Query:    2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPS--PSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREA 244
            QYRMHP +RAFPS RFY G+L DAP +     +  PS  PS              CF PFL  D++   E R G S QN  EA
Sbjct:   48 QYRMHPAVRAFPSKRFYNGQLADAPALASLGPLGIPSDWPSFHRHR---------CFAPFLFYDLTGSQEERIGTSVQNSAEA 121          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Helicase (SEN1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M3W6_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 7.790e-11
Identity = 42/83 (50.60%), Postives = 47/83 (56.63%), Query Frame = 2
Query:    2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPC--FPPFLLVDVSSGSERRAGNSYQNPREA 244
            QYRMHPEIR FPS  FYQGRLTDAP V   A  PAP  S+            PC    P++  DV+ G+ER  G S QN  EA
Sbjct:  303 QYRMHPEIREFPSDFFYQGRLTDAPSVL--AREPAPFYSA------------PCGVLKPYVAFDVARGAERFVGKSAQNEAEA 371          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Helicase (sen1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VM64_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 4.590e-9
Identity = 37/84 (44.05%), Postives = 42/84 (50.00%), Query Frame = 2
Query:    2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLG-PCFPPFLLVDVSSGSERR--AGNSYQNPREA 244
            QYRMHP IR FPSA FYQGRL DA  ++D                P  P  G P   P++  DVS G E+R   G S  N  EA
Sbjct:  781 QYRMHPAIRQFPSAHFYQGRLRDADSIQDM---------------PPAPFYGHPLMKPYVFFDVSKGQEQRREGGGSLSNRAEA 849          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Helicase (n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NTY7_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 6.190e-9
Identity = 39/81 (48.15%), Postives = 44/81 (54.32%), Query Frame = 2
Query:    2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREA 244
            QYRMHP+IRAFPS  FY GRL DAP V   A  PAP       G P+         P+ + D S G+ER  G S QN  EA
Sbjct:  868 QYRMHPQIRAFPSNYFYGGRLVDAPAVL--ARPPAPF-----YGDPSG-----LLQPYRVFDASRGAERFVGRSAQNEAEA 936          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WJ40_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 8.470e-9
Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 2
Query:    2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQN 232
            QYRMHPEIRAFPSA FY+GRL D   V   AA P P  +++               P+++ DV+ G E+ AG S  N
Sbjct:  858 QYRMHPEIRAFPSAFFYKGRLQDGESVLAAAARPPPFYAADL------------LKPYVVYDVAGGREQLAGRSRAN 922          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TBP1_CHLIN)

HSP 1 Score: 60.1 bits (144), Expect = 1.160e-8
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 2
Query:    2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREA 244
            QYRMHPEIRAFPSA FY+GRL D   V   AA P    +++               P+++ DV+ G E+ AG S  N  EA
Sbjct:  833 QYRMHPEIRAFPSAYFYKGRLQDGESVLAAAARPPAFYAADL------------LKPYVVYDVAGGREQLAGRSRANEAEA 901          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KWM0_MICPS)

HSP 1 Score: 59.7 bits (143), Expect = 1.210e-8
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 2
Query:    2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQ--AAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAG 217
            QYRMHP+I AFPSARFY G + DA  V+++  A +   +P +E   SP           FL VDV+SG E RAG
Sbjct:   37 QYRMHPDISAFPSARFYAGAVRDADAVKNRRLARLFPMAPPNEWIRSP-----------FLFVDVASGREERAG 99          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Match: Uncharacterized (protein n=5 Tax=Lactuca TaxID=4235 RepID=A0A2J6JUT4_LACSA)

HSP 1 Score: 58.5 bits (140), Expect = 4.020e-8
Identity = 36/83 (43.37%), Postives = 42/83 (50.60%), Query Frame = 2
Query:    2 QYRMHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNS--YQNPREA 244
            QYRMHP+IR FPS  FYQGRLTD+  V+ Q       P       P L        P++  DV+ G E   G S  YQN  EA
Sbjct:  976 QYRMHPQIRDFPSRYFYQGRLTDSESVKSQ-------PDENYYNDPLLR-------PYVFYDVTHGRESHRGGSVSYQNVHEA 1044          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Presumed2.700e-4091.46helicase required for RNA polymerase II transcript... [more]
AAA_127.230e-3486.67domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical7.000e-1244.58protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Helicase7.790e-1150.60SEN1 n=1 Tax=Monoraphidium neglectum TaxID=145388 ... [more]
Helicase4.590e-944.05sen1 n=1 Tax=Micractinium conductrix TaxID=554055 ... [more]
Helicase6.190e-948.15n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepI... [more]
Uncharacterized8.470e-944.16protein n=1 Tax=Chlamydomonas schloesseri TaxID=20... [more]
Uncharacterized1.160e-843.21protein n=1 Tax=Chlamydomonas incerta TaxID=51695 ... [more]
Hypothetical1.210e-847.30protein (Fragment) n=1 Tax=Micromonas pusilla TaxI... [more]
Uncharacterized4.020e-843.37protein n=5 Tax=Lactuca TaxID=4235 RepID=A0A2J6JUT... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig849contigE_fasciculatus_S2_contig849:19873..21091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score144.8
Seed ortholog evalue1.7e-32
Seed eggNOG ortholog2880.D8LLI3
Model size247
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
Cds size237
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842507.7791073-CDS-E_fasciculatus_S2_contig849:19872..200351696842507.7791073-CDS-E_fasciculatus_S2_contig849:19872..20035Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig849 19873..20035 -
1696842507.792334-CDS-E_fasciculatus_S2_contig849:20464..205071696842507.792334-CDS-E_fasciculatus_S2_contig849:20464..20507Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig849 20465..20507 -
1696842507.8023334-CDS-E_fasciculatus_S2_contig849:21050..210811696842507.8023334-CDS-E_fasciculatus_S2_contig849:21050..21081Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig849 21051..21081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842507.8128524-UTR-E_fasciculatus_S2_contig849:21081..210911696842507.8128524-UTR-E_fasciculatus_S2_contig849:21081..21091Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig849 21082..21091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig849.16618.1prot_E_fasciculatus_S2_contig849.16618.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig849 19873..21081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig849.16618.1

>prot_E_fasciculatus_S2_contig849.16618.1 ID=prot_E_fasciculatus_S2_contig849.16618.1|Name=mRNA_E_fasciculatus_S2_contig849.16618.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=79bp
MHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGP
CFPPFLLVDVSSGSERRAGNSYQNPREAS
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mRNA from alignment at E_fasciculatus_S2_contig849:19873..21091-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig849.16618.1 ID=mRNA_E_fasciculatus_S2_contig849.16618.1|Name=mRNA_E_fasciculatus_S2_contig849.16618.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1219bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig849:19873..21091- (Ectocarpus fasciculatus EfasUO2)
GCAGTACCGGATGCATCCCGAGATTCGAGCCTTTCCGTCAGGTGGGTTGG CGATCAAGTAATTCGGCAGACGTGAACCCGCCGCCTCATAATCCCCATTA TCCAAAGGTGTGTAGAGCACCCTAAGTATTGGAGGCGTCTCTACAATACC AGGAAAGGCACGGTGCTTAGTGTTGGAAGAGGATGCATGCTACACCATTG CGTTGGTCGAATATGAGTACGCCCCTCTGCCCCCTCTTCCATCCGTCTTA GGGAAAGAGCCTCGCTTGCCCCCCCCCTGCTGTATTGAAGTGCTGTGTAA CGATGTCTCCGTATTTGTCCATACATGCCGGGATGGATCACGAAGAAATC AACTTTATTTGCTTTGCTGAAGCCATATCCAACACGCGTAAGTACCGATT CGGCTCGGGCACCACTTTCGTTTGTGCCGTCGTGACTGCACCGGCCCATG GCTCGTTTCTCTCCCTCTTTCCCACTGTCCTCTCTTTTTCTTCTTTTCTG TGTCTTTGCGCTTCTGCCTCTAACGTCGTTTCTGCCCTCCCGCTCTCCCT GCCTTTCACTCCGTGGTACATCCCGGCTCATCAGCGCGCTTTTACCAAGG CAGGCTAACTGATGCTCCATGCGTAAGGTGAGCGAGACAGGCGAAACGTT CTTCTCCAAACACCTTTTTGGCCCGTCTCTTGCAAGGCTTTCGTGATGAG TGCAGCATAAGTTTTTTTCGCTGTGATATCAACGTGCAAAGGCCCGGTTT TGCAGACCGCTCGCTGTGACGGAAGTCGCGTCGTAGGTTCAAGCGTTTCG GCAGAGTCGCCTTCACGATGCCCTTTACTGCCCAATCCCCGACTCCGTCG TCTTGACTGAAGATTCCCGCGCTGCCGCCCACCAGCAGTCCTGCTCGCGT ACAGAGCAATTCCAAATACACGTCAACAGCAGAACGATTACATGTCCAGG ATATCAGAGAATGATTTGCAAGAGACCTAATGCTGTAGATAACATGGCAG GTGCGGGCGGACTTGACACACAAAACGGATACACACTGCCGCCCCCTCCG AAACAGGGACCAGGCAGCGATCCCTGCACCATCGCCATCATCGGAGACGA CTGGGTCTCCTGCTCTCCCCTCTCTCGGGCCGTGCTTTCCGCCGTTCCTC CTCGTCGATGTATCGTCCGGCTCCGAGCGGCGCGCCGGGAACTCGTACCA GAACCCACGGGAAGCGTCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig849:19873..21091-

>mRNA_E_fasciculatus_S2_contig849.16618.1 ID=mRNA_E_fasciculatus_S2_contig849.16618.1|Name=mRNA_E_fasciculatus_S2_contig849.16618.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=237bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig849:19873..21091- (Ectocarpus fasciculatus EfasUO2)
ATGCATCCCGAGATTCGAGCCTTTCCGTCAGCGCGCTTTTACCAAGGCAG
GCTAACTGATGCTCCATGCGTAAGGGACCAGGCAGCGATCCCTGCACCAT
CGCCATCATCGGAGACGACTGGGTCTCCTGCTCTCCCCTCTCTCGGGCCG
TGCTTTCCGCCGTTCCTCCTCGTCGATGTATCGTCCGGCTCCGAGCGGCG
CGCCGGGAACTCGTACCAGAACCCACGGGAAGCGTCC
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