mRNA_E_fasciculatus_S2_contig8451.16582.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8451.16582.1
Unique NamemRNA_E_fasciculatus_S2_contig8451.16582.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8451.16582.1 vs.
Match: Uncharacterized (protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NM36_TRISU)

HSP 1 Score: 53.5 bits (127), Expect = 5.000e-6
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    1 AVAEFVVLDQQPFNVVEAPSLQNLVQVAANDTNLKLPSRPTVAKKVWTMAICAEATLRDKMQG--THPALTTDCWTSNSGVSY 243
            AV++F++LD+QPF VVE    + L++         +PSR T+++  + + +  +A LR   +   T  ALTTDCWTS   + +
Sbjct:  135 AVSKFIILDEQPFKVVEGEGFKQLIRTL--QPQYTIPSRYTISRDCFKLYLEEKARLRALFRSDCTRVALTTDCWTSVQNLGF 215
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BLAST of mRNA_E_fasciculatus_S2_contig8451.16582.1 vs.
Match: HAT (family dimerization domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LC77_TRIPR)

HSP 1 Score: 53.5 bits (127), Expect = 5.290e-6
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    1 AVAEFVVLDQQPFNVVEAPSLQNLVQVAANDTNLKLPSRPTVAKKVWTMAICAEATLRDKMQG--THPALTTDCWTSNSGVSY 243
            A+++F++LD+QPF VVE    + L++         +PSR TV++  + + +  +A LR   +   +  ALTTDCWTS   + Y
Sbjct:  127 AISKFIILDEQPFRVVEGEGFKQLIRTL--QPQYTIPSRYTVSRDCFKLYLEEKARLRALFRSDCSRVALTTDCWTSVQNLGY 207
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BLAST of mRNA_E_fasciculatus_S2_contig8451.16582.1 vs.
Match: zinc (finger BED domain-containing protein DAYSLEEPER-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009058986)

HSP 1 Score: 52.0 bits (123), Expect = 1.750e-5
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:   10 EFVVLDQQPFNVVEAPSLQNLVQVAANDTNLKLPSRPTVAKKVWTMAICAEATLRDKMQGTHPALTTDCWTSNSGVSY 243
            EFV+LD+QPF VVE    + L+  A    N +LPSR TVA+    +    +A +++ ++     LT+D WTS   ++Y
Sbjct:   81 EFVILDEQPFRVVEGEGFKKLIAKAL--PNFELPSRVTVARHCLRIYHEEKAKIKNLIKNQRVCLTSDTWTSLQNLTY 156
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BLAST of mRNA_E_fasciculatus_S2_contig8451.16582.1 vs.
Match: zinc (finger BED domain-containing protein RICESLEEPER 2-like n=1 Tax=Arachis hypogaea TaxID=3818 RepID=UPI000DED3E9B)

HSP 1 Score: 50.8 bits (120), Expect = 4.640e-5
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:    1 AVAEFVVLDQQPFNVVEAPSLQNLVQVAANDTNLKLPSRPTVAKKVWTMAICAEATLRDKMQGT--HPALTTDCWTSNSGVSY 243
            +VAEFVVLD+ PF VVE    + ++     +    +PSR TV++  + + +  +  L++ +  +     LTTDCWTSN   +Y
Sbjct:  152 SVAEFVVLDEMPFKVVEGIGFRRMLN--RFEPRFTVPSRMTVSRDCFQLYLDEKKKLKEWLAKSCARVCLTTDCWTSNQNYTY 232
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BLAST of mRNA_E_fasciculatus_S2_contig8451.16582.1 vs.
Match: zinc (finger BED domain-containing protein RICESLEEPER 2-like n=1 Tax=Arachis hypogaea TaxID=3818 RepID=UPI000DEDE970)

HSP 1 Score: 50.8 bits (120), Expect = 4.720e-5
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:    1 AVAEFVVLDQQPFNVVEAPSLQNLVQVAANDTNLKLPSRPTVAKKVWTMAICAEATLRDKMQGT--HPALTTDCWTSNSGVSY 243
            +VAEFVVLD+ PF VVE    + ++     +    +PSR TV++  + + +  +  L++ +  +     LTTDCWTSN   +Y
Sbjct:  149 SVAEFVVLDEMPFKVVEGIGFRRMLN--RFEPRFTVPSRMTVSRDCFQLYLDEKKKLKEWLAKSCARVCLTTDCWTSNQNYTY 229
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BLAST of mRNA_E_fasciculatus_S2_contig8451.16582.1 vs.
Match: BED-type (domain-containing protein n=5 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7KJ54_PAPSO)

HSP 1 Score: 50.4 bits (119), Expect = 6.460e-5
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:    1 AVAEFVVLDQQPFNVVEAPSLQNLVQVAANDTNLKLPSRPTVAKKVWTMAICAEATLRD--KMQGTHPALTTDCWTSNS 231
            AV  FV+LD+QPF VVE    + L +V   ++  K+PSR T+++ V  +    +  +++  K       LTTD WTSN+
Sbjct:  219 AVILFVILDEQPFRVVEGEGFKELCRVL--ESRFKIPSRMTISRGVLNLYEAEKEKMKNYFKENNVRVCLTTDTWTSNA 295
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8451.16582.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized5.000e-634.94protein n=1 Tax=Trifolium subterraneum TaxID=3900 ... [more]
HAT5.290e-634.94family dimerization domain-containing protein (Fra... [more]
zinc1.750e-537.18finger BED domain-containing protein DAYSLEEPER-li... [more]
zinc4.640e-534.94finger BED domain-containing protein RICESLEEPER 2... [more]
zinc4.720e-534.94finger BED domain-containing protein RICESLEEPER 2... [more]
BED-type6.460e-536.71domain-containing protein n=5 Tax=Papaver somnifer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8451contigE_fasciculatus_S2_contig8451:884..1198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size315
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842504.2974958-CDS-E_fasciculatus_S2_contig8451:883..11981696842504.2974958-CDS-E_fasciculatus_S2_contig8451:883..1198Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8451 884..1198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8451.16582.1prot_E_fasciculatus_S2_contig8451.16582.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8451 884..1198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8451.16582.1

>prot_E_fasciculatus_S2_contig8451.16582.1 ID=prot_E_fasciculatus_S2_contig8451.16582.1|Name=mRNA_E_fasciculatus_S2_contig8451.16582.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=105bp
AVAEFVVLDQQPFNVVEAPSLQNLVQVAANDTNLKLPSRPTVAKKVWTMA
ICAEATLRDKMQGTHPALTTDCWTSNSGVSYECCLFFDRFQQRLFFCVVP
ILDV*
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mRNA from alignment at E_fasciculatus_S2_contig8451:884..1198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8451.16582.1 ID=mRNA_E_fasciculatus_S2_contig8451.16582.1|Name=mRNA_E_fasciculatus_S2_contig8451.16582.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8451:884..1198+ (Ectocarpus fasciculatus EfasUO2)
GCTGTGGCGGAGTTTGTCGTCCTGGACCAGCAGCCCTTCAACGTGGTCGA
GGCGCCCTCTCTGCAGAACTTGGTTCAAGTTGCCGCCAACGACACCAACC
TCAAGCTGCCTTCTCGCCCTACCGTGGCGAAAAAGGTGTGGACGATGGCG
ATCTGTGCGGAGGCCACCCTCCGTGACAAGATGCAGGGAACACACCCTGC
CTTGACCACGGACTGCTGGACCTCCAACAGCGGGGTAAGTTATGAATGCT
GTTTATTTTTCGACAGGTTTCAACAGCGTTTGTTTTTTTGCGTTGTACCC
ATACTAGATGTATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8451:884..1198+

>mRNA_E_fasciculatus_S2_contig8451.16582.1 ID=mRNA_E_fasciculatus_S2_contig8451.16582.1|Name=mRNA_E_fasciculatus_S2_contig8451.16582.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8451:884..1198+ (Ectocarpus fasciculatus EfasUO2)
GCTGTGGCGGAGTTTGTCGTCCTGGACCAGCAGCCCTTCAACGTGGTCGA
GGCGCCCTCTCTGCAGAACTTGGTTCAAGTTGCCGCCAACGACACCAACC
TCAAGCTGCCTTCTCGCCCTACCGTGGCGAAAAAGGTGTGGACGATGGCG
ATCTGTGCGGAGGCCACCCTCCGTGACAAGATGCAGGGAACACACCCTGC
CTTGACCACGGACTGCTGGACCTCCAACAGCGGGGTAAGTTATGAATGCT
GTTTATTTTTCGACAGGTTTCAACAGCGTTTGTTTTTTTGCGTTGTACCC
ATACTAGATGTATGA
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