mRNA_E_fasciculatus_S2_contig838.16512.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig838.16512.1
Unique NamemRNA_E_fasciculatus_S2_contig838.16512.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig838.16512.1 vs.
Match: C3H1-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC2_ECTSI)

HSP 1 Score: 867 bits (2240), Expect = 9.130e-313
Identity = 480/596 (80.54%), Postives = 503/596 (84.40%), Query Frame = 1 
Query:    1 MEAAGRSAERSAAGGDASAAAA---DSGVFHETDDISDILNVGLGGLPTLSASGQLSILSASAQEFTPGGQGNAILPLPAGDPSHAEGVEPEAWYCETFWEGGEVAAMPPAEEVQLYDGEGQGEEIGQDQDAYYAEVQLEAEVLEVLAEGFSDCSPESLQVALAKSDWNLDRASTAVLLALQTACDASLAVKPCRHLLLDGECRRSDCAFSHDFATTPCRYWLQGCCFKSSDDCYFMHDLVVPDEAVGFSSPGCEAGISAEEIGGXXXXXXDERQLSGADQFPSLPSTTTRPSPPIDGETVGIEGSAPYQTPSSTTNNVSGIALDTSAAAASPSDAGVSGPWIGDDSPATRREEAEEERNGKEDDKDVLLAAVTAPKGSQGGRXXXXXXXXKTRFTAVNLQALLKPGNPPANTANRNSRDNSPPNAFHPREMGSGIAQQDGGCGSSLSAQPGMSFADAVGSSSYPAGSTNELGRAVGVACSSPDAWGRA--SDRYPPPVVGGTSEWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPDDQV--SIDRCRLQQ 1767
            MEAAGRSAER   GGDA+       DSGVFHETDDISDILNVGLGGLPTLSASGQLSILSASAQEF PGG G+AILPLPAGDPSHA  VE EAW+ E+ WE GE+ A+ P+EEVQLYDG+GQ E  GQDQDAYYAEVQLEAEVLEVLAEGFSDCSPESLQVALAKSDWNLDRAS AVLLALQ ACDASLAVKPCRHLLLDGECRRSDC FSHDFATTPCRYWLQGCC  SSDDCYFMHDLVVPDEA GFS P CE GI+AEE   XXXXXXDERQLSG DQFPSLPST TR SPPIDG+ VG EGSAPYQTPSST N VSG+ALDT AA A+PSDAGVSGP IGDDSPAT REEAEE  N K+DDKDVLLAAV+APKG Q GR        KTRFTAVNLQALLKPG+P A T+       +P NAFHPREM SGIAQQDGG GSSLSA+PG+SFAD VGSSS PAGS N LGRA  VAC SP AW RA   DRYPP VVGG  EWVSTGDAVGKQY+QAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKH+QAAEYIFGARNP DQV  + D  R Q+
Sbjct:    1 MEAAGRSAERFGPGGDAAXXXXXXDDSGVFHETDDISDILNVGLGGLPTLSASGQLSILSASAQEFKPGGHGDAILPLPAGDPSHAGSVEHEAWHGESAWEEGELTAVSPSEEVQLYDGKGQEEGTGQDQDAYYAEVQLEAEVLEVLAEGFSDCSPESLQVALAKSDWNLDRASAAVLLALQIACDASLAVKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDLVVPDEAAGFSPPDCEPGITAEESXXXXXXXXDERQLSGVDQFPSLPSTATRLSPPIDGDMVGTEGSAPYQTPSSTKNGVSGVALDTIAAVAAPSDAGVSGPRIGDDSPATEREEAEEGWNEKKDDKDVLLAAVSAPKGQQRGRGRKGGRGRKTRFTAVNLQALLKPGSPHAKTS-------TPENAFHPREMSSGIAQQDGGGGSSLSAEPGISFADVVGSSSCPAGSANGLGRAAAVACPSPYAWRRAVGDDRYPPAVVGGGGEWVSTGDAVGKQYQQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHQQAAEYIFGARNPGDQVCSTFDNARRQR 589
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig838.16512.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 804 bits (2077), Expect = 5.970e-287
Identity = 449/585 (76.75%), Postives = 473/585 (80.85%), Query Frame = 1 
Query:    1 MEAAGRSAERSAAGGDASAAAA---DSGVFHETDDISDILNVGLGGLPTLSASGQLSILSASAQEFTPGGQGNAILPLPAGDPSHAEGVEPEAWYCETFWEGGEVAAMPPAEEVQLYDGEGQGEEIGQDQDAYYAEVQLEAEVLEVLAEGFSDCSPESLQVALAKSDWNLDRASTAVLLALQTACDASLAVKPCRHLLLDGECRRSDCAFSHDFATTPCRYWLQGCCFKSSDDCYFMHDLVVPDEAVGFSSPGCEAGISAEEIGGXXXXXXDERQLSGADQFPSLPSTTTRPSPPIDGETVGIEGSAPYQTPSSTTNNVSGIALDTSAAAASPSDAGVSGPWIGDDSPATRREEAEEERNGKEDDKDVLLAAVTAPKGSQGGRXXXXXXXXKTRFTAVNLQALLKPGNPPANTANRNSRDNSPPNAFHPREMGSGIAQQDGGCGSSLSAQPGMSFADAVGSSSYPAGSTNELGRAVGVACSSPDAWGRA--SDRYPPPVVGGTSEWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPDDQV 1740
            MEAAGRSAERS  GGDA+ AAA   DSGVFHETDDISDILNVGLGGLPTLSA GQLSILSASAQEF PGGQG+AILPLPAGDPSHA GVE  A +CE+ WE GE AA+PPAEEVQLYD EGQGE +GQDQDAYYAEVQLEAEVLEVLAEGFSDCSPESLQ                      TACDASLAVKPCRHLLLDGECRRSDCAFSHDFATTPCRYWLQGCC  SSDDCYFMHDLVVP+E  G S PG E G  AEE GG      DERQLSG DQFPSLPSTTTR  PPI  E VG EGSAP+QTPSST N VSG+ALDT AA A+PS AGVSGP IGDDSPAT+REEA    N K+D++DVLLAAV+APKG Q GR        KTRFTAV+LQALLKPG+P A T+       +P N FHPRE+GSGIAQQDG  G+SLSA+PGMSFAD VGSSS  AGSTN LGRA  VAC SPDAW RA   +RYPP VVGG  EWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAF+RGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNP DQV
Sbjct:    1 MEAAGRSAERSGPGGDAATAAAAADDSGVFHETDDISDILNVGLGGLPTLSALGQLSILSASAQEFKPGGQGDAILPLPAGDPSHAGGVEHGACHCESAWEEGEQAAVPPAEEVQLYDDEGQGEGMGQDQDAYYAEVQLEAEVLEVLAEGFSDCSPESLQ----------------------TACDASLAVKPCRHLLLDGECRRSDCAFSHDFATTPCRYWLQGCCVNSSDDCYFMHDLVVPNEEAGLSPPGSEPGRMAEESGGGGDSGSDERQLSGVDQFPSLPSTTTRLPPPIGSEIVGTEGSAPFQTPSSTKNGVSGVALDTIAAVAAPSAAGVSGPRIGDDSPATKREEAVG-WNEKKDNEDVLLAAVSAPKGPQRGRGRKGGRGRKTRFTAVDLQALLKPGSPHAKTS-------TPENVFHPREVGSGIAQQDGTGGASLSAEPGMSFADVVGSSSCLAGSTNGLGRAAEVACQSPDAWRRAIGDERYPPAVVGGGGEWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFQRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPGDQV 555
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig838.16512.1 vs.
Match: Uncharacterized (protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB56_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.650e-14
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 1 
Query: 1459 SDRYPPPV---------VGGTSEWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPDDQVSIDR 1752
            S R PPP           G ++EWVSTG AV  QY + RE A E+A ARNK F  AT+A+R G+  LA+ L+++G E N +MK  H  AA  IF +RNP +Q+ +DR
Sbjct:  406 SRRMPPPPPAYRTLYHKAGSSTEWVSTGQAVATQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNAKMKHFHFLAASDIFESRNPPNQLYMDR 512
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig838.16512.1 vs.
Match: Uncharacterized (protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEJ2_PLAHL)

HSP 1 Score: 85.5 bits (210), Expect = 8.240e-14
Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = 1 
Query: 1498 EWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPDDQVSIDR 1752
            +WV+TG++V  QY + RE A E+A ARNK F  AT+A+R G+  LA+DL+R+G E N +MK  H  AA  IF +RNP +Q+ +DR
Sbjct:  395 KWVTTGESVSSQYLELREQAHEMACARNKCFMGATQAYRNGNKALAKDLSRQGHEYNVKMKNFHFLAASEIFESRNPPNQLYMDR 479
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig838.16512.1 vs.
Match: Uncharacterized (protein n=18 Tax=Phytophthora TaxID=4783 RepID=G4ZFB7_PHYSP)

HSP 1 Score: 85.1 bits (209), Expect = 1.200e-13
Identity = 59/149 (39.60%), Postives = 79/149 (53.02%), Query Frame = 1 
Query: 1348 MSFADAVGSSSYPAGSTNELGRAVGVACSSPDAWGRASDRYPPPVV---------GGTSE-----WVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPDDQVSIDR 1752
            M+FA AV     P  +T  LG           ++G  S R  PP            G+SE     WVSTG +V  QY + RE A E+A ARNK F  AT+A+R G+  LA+ L+++G E N +MK  H  AA  IF +RNP +Q+ +DR
Sbjct:  379 MNFARAVALQPTPGATTRPLGNG---------SYGLDSTRRMPPPAPVHRPLYHKAGSSEGIGTKWVSTGQSVATQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNVKMKNFHFLAASEIFESRNPPNQLYMDR 518
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig838.16512.1 vs.
Match: Uncharacterized (protein AlNc14C400G11359 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYU9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.370e-13
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 1 
Query: 1477 PVVGGTSEWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPDDQVSIDR 1752
            PV     +WV+TG +V  QY Q RE+A +LA ARNK F  ATEA+R G+ ++A  ++R GR  N +MK+ H  AAE IF +RNP +QV  DR
Sbjct:  367 PVRMNKVKWVTTGKSVTSQYHQVREEAYQLACARNKCFMRATEAYRSGNKVIATSMSREGRLHNEKMKKLHLMAAEVIFKSRNPQEQVYRDR 458
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig838.16512.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B571_HYAAE)

HSP 1 Score: 83.2 bits (204), Expect = 5.160e-13
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 1 
Query: 1471 PPPVV-------GGTSE-----WVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPDDQVSIDR 1752
            PPP V        G+SE     W+STG AV  QY + RE A E+A ARNK F  AT+A+R G+  LAR L+R+G E N +MK  H  AA  IF +RNP  Q+ +DR
Sbjct:  414 PPPSVHRLLYHKAGSSEGIGTKWLSTGQAVATQYLKLREQAYEMACARNKCFMGATQAYRSGNKALARGLSRQGHEYNTKMKHLHFLAASEIFESRNPPSQLYMDR 519
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig838.16512.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJW5_PHYRM)

HSP 1 Score: 82.4 bits (202), Expect = 8.440e-13
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1 
Query: 1495 SEWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPDDQVSIDR 1752
            ++WVSTGD+V  QY + RE A E+A ARNK F  AT+A+R G+  LA+ L+++G + N +MK  H  AA  IF +RNP  Q+ +DR
Sbjct:  428 TKWVSTGDSVSTQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHDYNAKMKNFHFLAASEIFESRNPPSQLYMDR 513
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig838.16512.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J5L3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.560e-12
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1 
Query: 1495 SEWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPDDQVSIDR 1752
            ++WVSTG++V  QY + RE A ++A ARNK F  AT+A+R G+  LA+ L+++G E N +MK  H  AA  IF ARNP  Q+ +DR
Sbjct:  458 AKWVSTGESVATQYLELREQAYQMACARNKCFMGATQAYRNGNRALAKGLSKQGHEYNTKMKNFHFLAASDIFEARNPPSQLYMDR 543
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig838.16512.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XU03_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.680e-12
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1 
Query: 1459 SDRYPPPVV--------GGTSE-----WVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPDDQVSIDR 1752
            S R PPP+          G++E     WVSTG +V  QY + RE A ++A ARNK F  AT+A+R G+  LA+ L+++G E N +MK  H  AA  IF +RNP +Q+ +DR
Sbjct:  210 SRRIPPPLPVHRPLYHKAGSNESIGTKWVSTGQSVATQYLELREQAYQMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNTKMKHFHFLAASEIFESRNPPNQLYMDR 320
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig838.16512.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C3H1-type9.130e-31380.54domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized5.970e-28776.75protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.650e-1446.73protein n=2 Tax=Peronospora effusa TaxID=542832 Re... [more]
Uncharacterized8.240e-1450.59protein n=1 Tax=Plasmopara halstedii TaxID=4781 Re... [more]
Uncharacterized1.200e-1339.60protein n=18 Tax=Phytophthora TaxID=4783 RepID=G4Z... [more]
Uncharacterized1.370e-1350.00protein AlNc14C400G11359 n=1 Tax=Albugo laibachii ... [more]
Uncharacterized5.160e-1348.11protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Uncharacterized8.440e-1348.84protein n=1 Tax=Phytophthora ramorum TaxID=164328 ... [more]
Uncharacterized1.560e-1248.84protein n=3 Tax=Phytophthora kernoviae TaxID=32545... [more]
Uncharacterized1.680e-1243.24protein (Fragment) n=1 Tax=Phytophthora palmivora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig838contigE_fasciculatus_S2_contig838:19128..24444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score875.5
Seed ortholog evalue1.3e-251
Seed eggNOG ortholog2880.D7FNC2
Model size1767
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
EggNOG OGsKOG2401@1,KOG2401@2759
Cds size1767
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig838.16512.1prot_E_fasciculatus_S2_contig838.16512.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig838 19128..24444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842496.8522658-CDS-E_fasciculatus_S2_contig838:19127..193231696842496.8522658-CDS-E_fasciculatus_S2_contig838:19127..19323Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig838 19128..19323 -
1696842496.8715746-CDS-E_fasciculatus_S2_contig838:19625..200291696842496.8715746-CDS-E_fasciculatus_S2_contig838:19625..20029Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig838 19626..20029 -
1696842496.8816566-CDS-E_fasciculatus_S2_contig838:20971..213611696842496.8816566-CDS-E_fasciculatus_S2_contig838:20971..21361Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig838 20972..21361 -
1696842496.8928168-CDS-E_fasciculatus_S2_contig838:22094..223341696842496.8928168-CDS-E_fasciculatus_S2_contig838:22094..22334Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig838 22095..22334 -
1696842496.9024692-CDS-E_fasciculatus_S2_contig838:22757..228231696842496.9024692-CDS-E_fasciculatus_S2_contig838:22757..22823Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig838 22758..22823 -
1696842496.9124148-CDS-E_fasciculatus_S2_contig838:23378..236001696842496.9124148-CDS-E_fasciculatus_S2_contig838:23378..23600Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig838 23379..23600 -
1696842496.9261312-CDS-E_fasciculatus_S2_contig838:23719..238441696842496.9261312-CDS-E_fasciculatus_S2_contig838:23719..23844Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig838 23720..23844 -
1696842496.937852-CDS-E_fasciculatus_S2_contig838:24320..244441696842496.937852-CDS-E_fasciculatus_S2_contig838:24320..24444Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig838 24321..24444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig838.16512.1

>prot_E_fasciculatus_S2_contig838.16512.1 ID=prot_E_fasciculatus_S2_contig838.16512.1|Name=mRNA_E_fasciculatus_S2_contig838.16512.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=589bp
MEAAGRSAERSAAGGDASAAAADSGVFHETDDISDILNVGLGGLPTLSAS
GQLSILSASAQEFTPGGQGNAILPLPAGDPSHAEGVEPEAWYCETFWEGG
EVAAMPPAEEVQLYDGEGQGEEIGQDQDAYYAEVQLEAEVLEVLAEGFSD
CSPESLQVALAKSDWNLDRASTAVLLALQTACDASLAVKPCRHLLLDGEC
RRSDCAFSHDFATTPCRYWLQGCCFKSSDDCYFMHDLVVPDEAVGFSSPG
CEAGISAEEIGGGGGSSSDERQLSGADQFPSLPSTTTRPSPPIDGETVGI
EGSAPYQTPSSTTNNVSGIALDTSAAAASPSDAGVSGPWIGDDSPATRRE
EAEEERNGKEDDKDVLLAAVTAPKGSQGGRGRKGGRGRKTRFTAVNLQAL
LKPGNPPANTANRNSRDNSPPNAFHPREMGSGIAQQDGGCGSSLSAQPGM
SFADAVGSSSYPAGSTNELGRAVGVACSSPDAWGRASDRYPPPVVGGTSE
WVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFRRGDGLLARDLAR
RGRELNFRMKEKHRQAAEYIFGARNPDDQVSIDRCRLQQ
back to top

mRNA from alignment at E_fasciculatus_S2_contig838:19128..24444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig838.16512.1 ID=mRNA_E_fasciculatus_S2_contig838.16512.1|Name=mRNA_E_fasciculatus_S2_contig838.16512.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5317bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig838:19128..24444- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGCCGCAGGTCGTTCTGCAGAACGTTCTGCAGCTGGTGGCGACGC
CTCCGCCGCCGCCGCTGACAGCGGCGTGTTCCACGAGACCGATGACATAT
CGGACATCCTTAACGTCGGACTGGGTAAGTAAGTTGCTCACCACGGTCGG
GCTTGAGCTGGATTCTACAAGTAGTTTTCCCACGAAGGCCGCGTGCATTC
AAAAGCACGAACGGTAGGGGTTGTGTGGATGTGCGTTTCACATCGCGAGC
ACCGGAGACATTGCCCCACCCCCCAAAACAAAAATGTCCGTCGCTCACGG
ATTTGACATGTTCGTGCCTGCTTTCTGCGCGATGTAGCGCGTTCCTTCTG
TTGTGTCCGGCCAAATCATTTGAAATATACTCAGATTCATCCCAGGCTCG
ACATTATTTGAAAAAACTAGAGGAATGGCGTTCAGAAGTTGAGCTCGGCC
GCTGGCACAACACTACATGTCATGTGTAAAGTATCCTGTGCTTTCTCGTT
GACAAACATCAGTTACGTTTTGAGCCCTGCTCTGAACATGCGTTTGGGTA
AGCACGATCAATTTAGCTCCGAACGATTTTGCAACTGTGCTGATTTTCAG
GCGGGCTACCCACGCTGTCGGCATCGGGCCAACTGTCGATTTTGTCGGCA
TCCGCTCAGGAGTTCACACCGGGAGGCCAGGGGAACGCCATTCTTCCGTT
GCCGGCAGGCGACCCAAGCCATGCGGTAAGCCTTGTTAGGCACTATTTCT
GTTGCTGGTGCCACTGTGTGTTGCTGTAGTTGTTGTCGTCTTCGCTGCTG
CGGTTAGTTTCGTTGATGGCTTCTTATTGTTGTCGCTGAGACAGGAAGGT
GTTGAGCCCGAGGCTTGGTATTGCGAGACTTTCTGGGAAGGGGGCGAGGT
GGCTGCCATGCCACCAGCAGAGGAGGTTCAGCTGTACGACGGCGAGGGGC
AAGGGGAAGAGATCGGTCAAGACCAAGACGCGTACTACGCGGAGGTACAG
CTGGAGGCGGAAGTGTTAGAGGTCCTGGCGGAAGGGTTCTCGGACTGTTC
CCCGGAGAGCTTGCAGGTGAACGGGCGAAGCAAGTGCGTAGCGAGGCTGA
CTCCGTTTTGGTTGCGTGATGCGGTGTGTGGCGTGTAAGCTTTCCGCCAA
TTATCCTTTTTCGCACGTCCTGTGCGATGGATGCTGTATCATTCGGTGCT
GCGCTGCTGATTGTGACGTCCCTCTGACCTGACCTGCCCATCTCTAGTCC
TTGCGGTAGTCGTTACCTCCGCACAGAATCGCCCGCTAGCCTCTCAAAAC
TCCCCCGGACCAACTTCCATGTTTATGGGCCTCTCTTCTACTTTGGCCGT
GTTACCCTTTGGACATTGTAGCGTTTCTCGATTGCAGCTATAGACGTGTT
TGCTCCTGTGCTTCTTTCTGCGGTAGATACACCTGCCTCTGTGTAGCCGA
CTCAAAGACCATGTTTGACCTTGGTGGCTGGCGGCGAGCCAGGTAGGACT
ACATGCGTAAAGGTGTTGTTGCTCTTGCTGCTGTTGTTGCCATTGTTGCT
TGTGATCGATAGTTCGTTCACCCGCGCCATCCCCCCTTCCTATCGGGGTG
CTGTCGCTCTCTGCCACAAAGGTTGCGCTTGCAAAGAGCGACTGGAACCT
GGATCGAGCTTCCACTGCTGTCCTGTTGGCGCTTCAGGTGATAACCGTTT
TGATCTTAGCCTCATATTCGTAGTGGTATCACAGCTTGCCCTCTTGTTGT
TTTGGGCAATGTGTTTCGATTGGGTAAGGTACTTCGACTTGGTTTTGCGT
TTAAGATTTATTTGTCAGGTCTGCAAGAAGTCATCGAACGTCGGTCGTAT
CGATCTTCGGTGCTTTCATTCACTCTTGCGAAACTGTCGAAGATCCCCTG
TGTCACCTGCGCAGTCCATTTTCAATATTATGGATATGTAGTCGAGAGGC
TCTACGCCCCCCTAAGGTAAAAGGACCGCTTAATTGTTTCTGGTGTCCCG
AAAGAGTGACGAGCGATCAACGGTCGAACGACCCAGGCAAGCAACAAATC
TCCACCCCGCCCCTGGCCTCGGTTCATGGACGACAATCCCGATCTCCACA
ATCGAACAAGACCGCTTGCGACGCCTCTCTAGCCGTCAAGCCCTGCCGAC
ACCTCCTGCTGGACGGAGAGTGCAGGAGGAGTGACTGCGCCTTCAGCCAC
GACTTCGCCACCACCCCTTGCCGTTACTGGCTGCAGGGTTGCTGTTTCAA
GTCCTCGGACGATTGTTACTTTATGCACGACTTGGTCGTTCCCGACGAAG
CGGTGGGATTTTCTTCACCGGGCTGCGAGGCGGGCATATCGGCGGAGGAG
GTGAAGTCTGGGAAGGGGCGAAGGGTATATGTCACATGGATTCGCATGTT
TCTATGTAGCCGACTTCACTTAGTGTGGGGCCATGGATTTTGGCTATTCT
TGTGCAACCGATCACACGTGGTGGGGCGGTGTATGCCTATGCTTTCATGG
AATTGTTTCAATTGGTCTGGTGTCCCCTGTATACCTTGAACACGGCAACA
ACGAAAGAGGTGATAGGTGCCATGGAATTTTGAACACAACAAGGGTTCCA
ACTGTTGTTTTTGAGCGAAGCCCGGTATTGTGTTTCCTTTGGGTGCTTGA
GCCACCGGAGTATGGGCCTCGGCAATCCGAAGGTGCACAATTTCATTGTT
GCCACGTGGTGATGAAAGTCAAGACCGGAAGACGTGATGGGTGCCAGGTG
TACGAGGAACCGCACATCGCGTGACAGCTTTCGGAGCAGAATGGCGGTGT
TAACTCAAAACGGAGTGCCTGGTACAACAAGGAATGTGCGCTGGGTGCGC
TGCCTGTTTCGGTGTACTTTCGCCATTGACAGCACCGTGTTTCCCTCACG
GCCCGCACGCTGCTGGCAAGTTCGTCCACCTGCTGGTCTGTCTGGTTGTC
TATCTGTCTGTCTGTCCGGCTGTCTAACAGTGCTATTGGTGCTGCTACCG
GTTGGTATGTTGCGCGTCCATCCTCTTGCCTTCCGGGGTCTGTCGGCGGC
TCGGGACTTCATCATTTTCCTCGGGAATTTCAGATCGGCGGTGGCGGCGG
CAGCAGCAGCGACGAGAGACAACTGTCCGGAGCTGACCAATTCCCGTCCT
TGCCGTCAACGACAACGCGTCCTTCTCCGCCAATTGACGGTGAAACAGTC
GGCATTGAGGGCAGTGCTCCGTATCAAACGCCTTCGTCCACGACGAACAA
TGTCAGCGGAATCGCGTTGGACACGAGTGCCGCGGCTGCTTCACCCTCTG
ACGCCGGTGTCTCCGGGCCGTGGATCGGGGACGACAGCCCGGCTACAAGA
AGGGAGGAAGCGGAAGAGGAAAGGAATGGAAAGGAGGATGACAAGGACGT
GCTGCTGGCGGCAGTTACGGCGCCGAAAGGGTCGCAAGGGGGCCGCGGGC
GGAAAGGAGGACGAGGTCGGAAGGTGAGGACGAAGATTCATTAGTTTATC
GCGCCGGGGGGGTTTTGTTGTGAACGACTAGAATTCGTCGGGAACAGCAA
TAGTTTTTGAGAGGGATAGGAGTCTATCAGAATGAAACGATTCTCTGAAC
GGAGGAACGTGATCAGGCACGGCGAATTGTTCTCTTGGAGCAGAGTGGAT
TTCATGTGAACGGAGGGATCATCTTCGGGAAAGAGAGTTTGTTCTCGGGG
TCAACGGAGTGAATGTTGGGACGCCTGGGTGATTTGTACTCGGAGCTGAG
TGAATTTCGAGCGAGCGAAGTGAGTTTTGGCCAAAACAGCGATGATTTTT
GGAGGGAAGAGGGTGAGTTTTAAATGATAGAAGATTTTCGAGGAGACTCT
TGGGCTCTATAAATGAGTGTGCGTCTCTCGATTCGTTATGTTGAAGGTTT
AAGAACAAGGGGAATGAAGTCCAACTACCTTCTGTGCTGTGAACGCTGTC
GGTAGTTCTACCCTTGTATGTCCACAAGATGAACAACTTGGATCGCCGTT
CGTCGCCACATCTATCATGTCTAGCATTAGCCTCGTTCAGGTTCGTTTGA
CAGCTCCGCAGGCAGAGCCGTAGCTGATGCTTTTCCTTAACTTTACTGAT
GTTGTTGCCATTCGCTACACTCGCGTCAACCAGGCGTTAAACTGACAACC
AGCGTCATTCGTCTTGCCCGACCTTTCTTAACTCTACCGTTTCAACGGCG
AAGAACCTCGTGTCCGCGGCTACAAACCCACCTAATATACGATATACAAA
GTACGTGTTCTCTTGAGCTCGAACGTACTGTGCAGCATGACAACCCGCAC
CTCGTTCCCTGGAATATCGCGATCCCGTAGTGGCGTTCTTGTGTGCGCAG
ACTGCCCTCCCGCCTCTCACACACCTCTCCTTTCCGCCGCTATTTCATTG
TTCTTTCTTCTTCAGACACGCTTTACAGCGGTCAACCTTCAAGCGTTGTT
GAAACCTGGCAATCCCCCCGCAAACACAGCAAATCGCAACAGCCGCGACA
ATTCGCCGCCAAACGCTTTCCACCCTCGGGAGATGGGCTCGGGAATAGCC
CAACAGGATGGAGGTTGTGGTAGCAGCCTGAGCGCGCAGCCGGGCATGTC
CTTTGCCGATGCCGTGGGCTCGTCATCATACCCAGCCGGAAGCACCAATG
AGCTTGGAAGGGCCGTTGGAGTCGCGTGTTCGTCCCCCGATGCGTGGGGG
AGAGCTAGTGATCGGTATCCCCCTCCTGTCGTCGGAGGTACAAGCGAATG
GGTGTCGACGGGAGATGCGGTGGGAAAGCAGTACGAGCAAGCCAGGGAAG
ATGCGGCGGAATTGGCGAGGTACTGCTGTGATGACGCATGACCATTGCAA
TCGTGTCACCCTCCCTGCGCGGCGATGCGTGACGCTCGGTTCCTCAACAC
ATTGCATGGGTCGTCGATGCTTCTCTTGGGGACGTTAACATTGCATTCGG
CTGATGATTTTTGCACGCTCGCCGTTTGGCCTGACATGCCTCCGATAGTA
CTCGTTGAGGTCAGGATGCTTCTTGCATCTAGACAACACGCCAGTCTAAC
CCCACAGCAACAGCAGCAATAACAACTACAATGACAATGACAATGACAAT
GACAATGACAACAATGCCCAGGGCGCGGAACAAGTTTTTCACTTCGGCAA
CAGAGGCATTCCGAAGGGGGGATGGGTTGCTCGCACGCGATCTGGCCCGT
CGCGGGAGAGAGCTAAACTTCAGGATGAAAGAAAAACATCGACAAGCTGC
CGAGTACATTTTCGGCGCCAGAAACCCGGATGATCAGGTGAGCATTGATC
GTTGTCGACTCCAACAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig838:19128..24444-

>mRNA_E_fasciculatus_S2_contig838.16512.1 ID=mRNA_E_fasciculatus_S2_contig838.16512.1|Name=mRNA_E_fasciculatus_S2_contig838.16512.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1767bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig838:19128..24444- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGCCGCAGGTCGTTCTGCAGAACGTTCTGCAGCTGGTGGCGACGC
CTCCGCCGCCGCCGCTGACAGCGGCGTGTTCCACGAGACCGATGACATAT
CGGACATCCTTAACGTCGGACTGGGCGGGCTACCCACGCTGTCGGCATCG
GGCCAACTGTCGATTTTGTCGGCATCCGCTCAGGAGTTCACACCGGGAGG
CCAGGGGAACGCCATTCTTCCGTTGCCGGCAGGCGACCCAAGCCATGCGG
AAGGTGTTGAGCCCGAGGCTTGGTATTGCGAGACTTTCTGGGAAGGGGGC
GAGGTGGCTGCCATGCCACCAGCAGAGGAGGTTCAGCTGTACGACGGCGA
GGGGCAAGGGGAAGAGATCGGTCAAGACCAAGACGCGTACTACGCGGAGG
TACAGCTGGAGGCGGAAGTGTTAGAGGTCCTGGCGGAAGGGTTCTCGGAC
TGTTCCCCGGAGAGCTTGCAGGTTGCGCTTGCAAAGAGCGACTGGAACCT
GGATCGAGCTTCCACTGCTGTCCTGTTGGCGCTTCAGACCGCTTGCGACG
CCTCTCTAGCCGTCAAGCCCTGCCGACACCTCCTGCTGGACGGAGAGTGC
AGGAGGAGTGACTGCGCCTTCAGCCACGACTTCGCCACCACCCCTTGCCG
TTACTGGCTGCAGGGTTGCTGTTTCAAGTCCTCGGACGATTGTTACTTTA
TGCACGACTTGGTCGTTCCCGACGAAGCGGTGGGATTTTCTTCACCGGGC
TGCGAGGCGGGCATATCGGCGGAGGAGATCGGCGGTGGCGGCGGCAGCAG
CAGCGACGAGAGACAACTGTCCGGAGCTGACCAATTCCCGTCCTTGCCGT
CAACGACAACGCGTCCTTCTCCGCCAATTGACGGTGAAACAGTCGGCATT
GAGGGCAGTGCTCCGTATCAAACGCCTTCGTCCACGACGAACAATGTCAG
CGGAATCGCGTTGGACACGAGTGCCGCGGCTGCTTCACCCTCTGACGCCG
GTGTCTCCGGGCCGTGGATCGGGGACGACAGCCCGGCTACAAGAAGGGAG
GAAGCGGAAGAGGAAAGGAATGGAAAGGAGGATGACAAGGACGTGCTGCT
GGCGGCAGTTACGGCGCCGAAAGGGTCGCAAGGGGGCCGCGGGCGGAAAG
GAGGACGAGGTCGGAAGACACGCTTTACAGCGGTCAACCTTCAAGCGTTG
TTGAAACCTGGCAATCCCCCCGCAAACACAGCAAATCGCAACAGCCGCGA
CAATTCGCCGCCAAACGCTTTCCACCCTCGGGAGATGGGCTCGGGAATAG
CCCAACAGGATGGAGGTTGTGGTAGCAGCCTGAGCGCGCAGCCGGGCATG
TCCTTTGCCGATGCCGTGGGCTCGTCATCATACCCAGCCGGAAGCACCAA
TGAGCTTGGAAGGGCCGTTGGAGTCGCGTGTTCGTCCCCCGATGCGTGGG
GGAGAGCTAGTGATCGGTATCCCCCTCCTGTCGTCGGAGGTACAAGCGAA
TGGGTGTCGACGGGAGATGCGGTGGGAAAGCAGTACGAGCAAGCCAGGGA
AGATGCGGCGGAATTGGCGAGGGCGCGGAACAAGTTTTTCACTTCGGCAA
CAGAGGCATTCCGAAGGGGGGATGGGTTGCTCGCACGCGATCTGGCCCGT
CGCGGGAGAGAGCTAAACTTCAGGATGAAAGAAAAACATCGACAAGCTGC
CGAGTACATTTTCGGCGCCAGAAACCCGGATGATCAGGTGAGCATTGATC
GTTGTCGACTCCAACAG
back to top