mRNA_E_fasciculatus_S2_contig8369.16501.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8369.16501.1
Unique NamemRNA_E_fasciculatus_S2_contig8369.16501.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8369.16501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD8_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.530e-25
Identity = 67/144 (46.53%), Postives = 91/144 (63.19%), Query Frame = 1 
Query:   94 RDDN--VPVKVHASGLGWMPLPVASLFLSWSIPASLAVLLSVFMIV---RGVSQRIAAHVVPLHVAESAILHRTGERSAGHVRRAGILLSINLDNDNETWTILMAVHRFIQLSSAT-------DQGHVLGDLYVEVTSSGSTDV 489
            RDD+  + V    SGLGWM L VA+L   W+IPASL+V+  +F+++   R V  R AA V    +A SA++   GER AG   RA + +S+NLD+D ETW  LMAV+RF+  +  T        +G+VLGDL V++ SSGSTDV
Sbjct:  402 RDDDKCIHVTARTSGLGWMWLAVAALRPLWNIPASLSVVSGMFLMLLHLRSVRPRAAARVAEGRIAGSALIRGAGERRAGRASRAMLFVSLNLDSDGETWARLMAVYRFVLSTGGTVPRGDGPGEGYVLGDLEVDIRSSGSTDV 545
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8369.16501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL7_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.610e-14
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:  295 RTGERSAGHVRRAGILLSINLDNDNETWTILMAVHRFI-------QLSSATDQGHVLGDLYVEVTSSGSTDV 489
            R+GER  G   R+ ILLS+NLDN++ETWT LMAVHR++       +LS    +GHV GDL+VE TSSGSTD+
Sbjct:  389 RSGERRVGRGGRSAILLSLNLDNEDETWTRLMAVHRWLLSRGGTNRLSQGPSRGHVFGDLHVEATSSGSTDM 460
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8369.16501.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.530e-2546.53protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.610e-1456.94protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8369contigE_fasciculatus_S2_contig8369:3180..4599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size515
Hectar predicted targeting categorysignal peptide
Exons4
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842495.6721823-UTR-E_fasciculatus_S2_contig8369:3179..33201696842495.6721823-UTR-E_fasciculatus_S2_contig8369:3179..3320Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8369 3180..3320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842495.6844213-CDS-E_fasciculatus_S2_contig8369:3320..34321696842495.6844213-CDS-E_fasciculatus_S2_contig8369:3320..3432Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8369 3321..3432 +
1696842495.6942384-CDS-E_fasciculatus_S2_contig8369:3864..39061696842495.6942384-CDS-E_fasciculatus_S2_contig8369:3864..3906Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8369 3865..3906 +
1696842495.7051425-CDS-E_fasciculatus_S2_contig8369:3942..40681696842495.7051425-CDS-E_fasciculatus_S2_contig8369:3942..4068Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8369 3943..4068 +
1696842495.7178056-CDS-E_fasciculatus_S2_contig8369:4507..45991696842495.7178056-CDS-E_fasciculatus_S2_contig8369:4507..4599Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8369 4508..4599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8369.16501.1prot_E_fasciculatus_S2_contig8369.16501.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8369 3321..4599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8369.16501.1

>prot_E_fasciculatus_S2_contig8369.16501.1 ID=prot_E_fasciculatus_S2_contig8369.16501.1|Name=mRNA_E_fasciculatus_S2_contig8369.16501.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=124bp
MPLPVASLFLSWSIPASLAVLLSVFMIVRGVSQRIAAHVVPLHVAESAIL
HRTGERSAGHVRRAGILLSINLDNDNETWTILMAVHRFIQLSSATDQGHV
LGDLYVEVTSSGSTDVSTGGYLLS
back to top

mRNA from alignment at E_fasciculatus_S2_contig8369:3180..4599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8369.16501.1 ID=mRNA_E_fasciculatus_S2_contig8369.16501.1|Name=mRNA_E_fasciculatus_S2_contig8369.16501.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1420bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8369:3180..4599+ (Ectocarpus fasciculatus EfasUO2)
ATGCCCCCCCCTGTTCTTCTCCTACCTCATGAGCACACTCGTCGTCGGTG
ATCCTGCCGTCTGTTGTTGTTTTGACCTATCATTCTGTATCAGCGGGATG
ACAACGTCCCCGTGAAGGTGCACGCCAGTGGTCTAGGCTGGATGCCACTG
CCGGTTGCCTCCTTGTTCCTGTCGTGGAGTATCCCAGCGTCGCTGGCCGT
ACTGTTGAGCGTGTTCATGATAGTCCGCGGCGTCAGTCAGAGGATAGCAG
CTCGTGCCGACGCATCTCGGACTGAAGGAAGGATTTCGATTAGAGGTAAG
TTCTGCATCGGTGTTTGTCAAATATCCCATGGTAAATATCAATTTTTGGT
CGCAGTTTTCTGAAGGACGGTACGAAGAGGGGTCAAACGTCGATTGGGTT
GGGCGTTGGACAGTCAAGGCATACATTTCTCTGGCGTAGCGACAGCCCCA
ATAGTCAGGGATGTCTTGTGGAATGGCCACTGTACAACAAATTTGACGAA
TCTCGTCCTGGCTGACCGTTACCAATATATGCGAGGAATGGCAGTGCCGA
CGGGTACGAATATTTCTTCCATTCTCTCACATTTACCTAAGAATCAAATA
TCTTCAGGAAACTACAGCAGCAGTGACGCTACCGATTCCCACACTTGCAA
GAACGACGACGACGACGACAAGACCCGATCCGTAGATGTTGTACCCCTCC
ATGTTGCAGAAAGTGCTATCCTCCACAGTACACCGAAGTTGCACATATTC
TTGCGCTTTGCAGGAACTGGAGAAAGGAGCGCGGGCCATGTGCGTCGTGC
TGGAATATTGTTGTCGATAAACCTCGACAACGACAACGAGACATGGACCA
TACTGATGGCGGTCCATCGGTTTATACAACTCTCCAGTGGTGAGATGAAC
TTGTTGTACTTAACGTTCGTGGTGGAGTTGTTGTCGTTGCGGATTCTTGA
GCGTAGCCGTGGTGGCGGCCACGGTGGAGGTAGAATTGCTGTTATCGCTA
TCGTTTCTGGTGATGGCTTGGGTTGGTAAAGATGCTGGAATCCTTCGGCG
TATTCCGCTCGTCTGGCGGTTCTCCCAGAATATGCTATCATACCGACAAC
CTGTTCTCAGCAATACCCGGCGGTCGGTATCCTTGCGGAAGCCTCCGCCA
TGTTCGTTCGGGGAAGGCGATGGCATCTTGGTTAGTACATGCCAATCGGG
AAGCATCGATGGTCTTACATTTTCGAATACCGTCTGGGGGCTAGACGGGG
CTGCTATTCTCGTCCACCCTCTAATCCATACTCTTCGGTTGTCGATGCTG
TCGGGTGGAACGGTTGGCCGCTGCGAAGCAACGGACCAGGGACATGTCCT
CGGGGACCTGTACGTGGAGGTTACGAGCTCCGGCTCGACAGATGTGAGTA
CCGGAGGGTATCTCCTGAGT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8369:3180..4599+

>mRNA_E_fasciculatus_S2_contig8369.16501.1 ID=mRNA_E_fasciculatus_S2_contig8369.16501.1|Name=mRNA_E_fasciculatus_S2_contig8369.16501.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=372bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8369:3180..4599+ (Ectocarpus fasciculatus EfasUO2)
ATGCCACTGCCGGTTGCCTCCTTGTTCCTGTCGTGGAGTATCCCAGCGTC
GCTGGCCGTACTGTTGAGCGTGTTCATGATAGTCCGCGGCGTCAGTCAGA
GGATAGCAGCTCATGTTGTACCCCTCCATGTTGCAGAAAGTGCTATCCTC
CACAGAACTGGAGAAAGGAGCGCGGGCCATGTGCGTCGTGCTGGAATATT
GTTGTCGATAAACCTCGACAACGACAACGAGACATGGACCATACTGATGG
CGGTCCATCGGTTTATACAACTCTCCAGTGCAACGGACCAGGGACATGTC
CTCGGGGACCTGTACGTGGAGGTTACGAGCTCCGGCTCGACAGATGTGAG
TACCGGAGGGTATCTCCTGAGT
back to top