prot_E_fasciculatus_S2_contig8314.16458.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig8314.16458.1
Unique Name	prot_E_fasciculatus_S2_contig8314.16458.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	404

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8314.16458.1 vs. uniprot
Match: D8LKK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKK6_ECTSI)

HSP 1 Score: 461 bits (1185), Expect = 9.660e-158
Identity = 322/389 (82.78%), Postives = 328/389 (84.32%), Query Frame = 0

Query:   19 MYREQEAEEHSEDEDYEGPGKFDAFERPAFKRRTVKTRAIQWALEDRRDHATGGGIKYIGDKITQQMSRYATFKVDPNRPQTIEVTPIDEWWQFKKAPKDTGKGKNMTVKEAEELMKKQENFLGPLSLANRILGKKSLEAAAKENAERSRYGGLDHEDTQASKQAPAYLVLKEAGMKLASPEDARGVDSFGNGSGSDGGGAAQIEKGEVDSDAGGEDXXFGDEVRSDDEXXXXXXXXXXXXXXXXXXXEDLXXXXXXXXXXXEHHELQKLSRSVNAEGGHGEEEDDYTVSGDIGRASPTLPPPGNPKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGASAMEVGXXXXXXXXXXXXXXXXXXXXXXXXXXXX---ARTAQKKGAQEI 404
            MYREQEAEEHSEDEDYEGPGKFDAFERPAFKRRT+KTRAIQWALEDRRDHA GGGIKY GDKITQQMSRYATFKVDPNRPQTIEVTPIDEWWQFKKAPKDTGK  NMTVKEAEELMKKQENFLGPLSLANRILGKKSLEAAAKE AE+SRYGGLDHEDTQ         VLKEAGMKLASPED + VD FG+GSGSDGG A +IEKGEVDSDAGGED  FGDEVRSD  XXXXXXXXXXXXXXXXXXX  L  XX       EHHELQKLSRSVNAEGGH EEEDDYTVSGDIGRASPT+PPPGNPKP           XXXXXXXXXXXXXXX  KRGASAMEVG   XXXXXXXXXXXXXXX   X  XX     ARTAQKKGAQEI
Sbjct:    1 MYREQEAEEHSEDEDYEGPGKFDAFERPAFKRRTIKTRAIQWALEDRRDHAQGGGIKYTGDKITQQMSRYATFKVDPNRPQTIEVTPIDEWWQFKKAPKDTGK--NMTVKEAEELMKKQENFLGPLSLANRILGKKSLEAAAKEKAEQSRYGGLDHEDTQ---------VLKEAGMKLASPEDTQAVDGFGDGSGSDGG-AGEIEKGEVDSDAGGEDDDFGDEVRSDXXXXXXXXXXXXXXXXXXXXXXXLNDXXDEHLTDDEHHELQKLSRSVNAEGGHVEEEDDYTVSGDIGRASPTVPPPGNPKPAAGAPAGDGADXXXXXXXXXXXXXXXG-KRGASAMEVGGGEXXXXXXXXXXXXXXXTGSXGEXXSGSKRARTAQKKGAQEI 376

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8314.16458.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig8314.16458.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LKK6_ECTSI	9.660e-158	82.78	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011039	Transcription Factor IIF, Rap30/Rap74, interaction	SUPERFAMILY	50916	Rap30/74 interaction domains	coord: 43..137

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8314	contig	E_fasciculatus_S2_contig8314:3..6028 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8314.16458.1	mRNA_E_fasciculatus_S2_contig8314.16458.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig8314 3..6028 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig8314.16458.1 ID=prot_E_fasciculatus_S2_contig8314.16458.1|Name=mRNA_E_fasciculatus_S2_contig8314.16458.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=404bp
KVPRPPFDDPTVFSKPAYMYREQEAEEHSEDEDYEGPGKFDAFERPAFKR
RTVKTRAIQWALEDRRDHATGGGIKYIGDKITQQMSRYATFKVDPNRPQT
IEVTPIDEWWQFKKAPKDTGKGKNMTVKEAEELMKKQENFLGPLSLANRI
LGKKSLEAAAKENAERSRYGGLDHEDTQASKQAPAYLVLKEAGMKLASPE
DARGVDSFGNGSGSDGGGAAQIEKGEVDSDAGGEDDDFGDEVRSDDEEEV
GNDDANEGGGTLHQDDEDLNDSDDEHLTDDEHHELQKLSRSVNAEGGHGE
EEDDYTVSGDIGRASPTLPPPGNPKPAAAAAAAAGAPAGDGADASAGGGG
AGSGKRGASAMEVGGGEGGGGSAAGRAGGKGSGGEGGGGSKRARTAQKKG
AQEI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011039	TFIIF_interaction