mRNA_E_fasciculatus_S2_contig83.16448.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig83.16448.1
Unique NamemRNA_E_fasciculatus_S2_contig83.16448.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig83.16448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI)

HSP 1 Score: 494 bits (1272), Expect = 3.870e-172
Identity = 242/265 (91.32%), Postives = 250/265 (94.34%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPTESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYLTRGGIDEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGIE 795
            MDKSGASGARRVATE+WRKDELVFDTVQWRRGDGFAADVMAS WKLLHGGCVESLRNHKGRSCKW+TIFRHPIARLLSAYDHCLGAPKDP+CPPTESTGLA FAELWGNFA+RQFALAAVSPSAVKEWAAQ QAR G SMWYLVK+YL RGGI EDEVL S LEPVKGLLSTQYAAVGIAQEL+TTMVLFSKALS EGLDW+SSWATLGINEEDKQDSEYDITES  FRQAL NPRI SALRLDMSLYEHAVHVF DQVA+FGIE
Sbjct:    1 MDKSGASGARRVATEQWRKDELVFDTVQWRRGDGFAADVMASRWKLLHGGCVESLRNHKGRSCKWITIFRHPIARLLSAYDHCLGAPKDPVCPPTESTGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGIE 265          
BLAST of mRNA_E_fasciculatus_S2_contig83.16448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE)

HSP 1 Score: 488 bits (1255), Expect = 2.560e-165
Identity = 240/265 (90.57%), Postives = 247/265 (93.21%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPTESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYLTRGGIDEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGIE 795
            MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHK RSCKWLTIFRHPIARLLSAY HCL APKDP+CPPTESTGL VFAELWGNFA+RQFAL +VSPSAVKEWAAQ QAR G SMWYLVK+YL RGGI EDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALS EGLDW+SSWATLGINEE KQDSEYDI ES  FRQAL NPRI SALRLDMSLYEHA+HVF DQVA+FGIE
Sbjct:  279 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKERSCKWLTIFRHPIARLLSAYHHCLEAPKDPVCPPTESTGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQARTGTSMWYLVKEYLARGGIAEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATLGINEEVKQDSEYDIAESEPFRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGIE 543          
BLAST of mRNA_E_fasciculatus_S2_contig83.16448.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.810e-43
Identity = 106/308 (34.42%), Postives = 158/308 (51.30%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELV----FDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKG---RSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPT------ESTGLAVFAELWGNFALRQFALAAVSPSAVK----EWAAQG-----QARKGASMWYLVKDYLTRGGIDEDE-------------------VLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGIEEG 801
            M+K+G S  + +    W K + V    +D+ QW  G  FA D +     L+ G   E LR   G   R CKW TIFRHPI RL+SAY +C   P+D +C         + T L  FAE WG+F LRQFALA V P  +     ++ A G       ++    WY +K YL +  +DE E                    +  +L+PV+ LL+ +YAAVG+ ++ ET+++LF++AL   G DW  ++ ++G       D  +   E+    ++  +PR+   L LD+ LY++AV V N QV K+G+ EG
Sbjct:    1 MNKAGGSTVKYMLAP-WTKAQNVTVGLYDSPQWLEGKDFAQDFLGDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQ-LDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKK---NSDGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGLGEG 303          
BLAST of mRNA_E_fasciculatus_S2_contig83.16448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 8.770e-42
Identity = 101/299 (33.78%), Postives = 151/299 (50.50%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMAS-----HWKLLHGGCVESLR-------NHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPP----TESTGLAVFAELWGNFALRQFALAAVSPSAVKEW-------AAQGQARKGASM---WYLVKDYLT-RGGIDEDEV-----LESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLG-INEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGIEE 798
            + K+G +  +R+  + W  +   +D+ QW++G G+A  V AS      W    GG +E+LR       + +   C+W T+FRHP++RL+SAY +C   P D +C      + +  L  FA  WGNFALRQFAL  VS   VK++        A G   +   +   WY++K +L  R G+ +D       LE M  PV  LL   YA VGI ++   T+ LF  AL   G+ W   +   G +N     D+ +   +    +QAL++P I   L LD+ LY  AV +FN Q   +GI +
Sbjct:   94 LQKAGGTTVKRLLFDSWGSESTTYDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLNDRSGVADDTSPEGTRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLN----VDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGIAQ 388          
BLAST of mRNA_E_fasciculatus_S2_contig83.16448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 8.670e-36
Identity = 92/287 (32.06%), Postives = 140/287 (48.78%), Query Frame = 1
Query:    1 MDKSGASGARRVA----TERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPT----ESTGLAVFAELWGNFALRQFALAAVSPS------AVKEWAAQGQARKGASM--WYLVKDYLTR-------GGIDEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGI 792
            M+KSG    R++     TE+     L FD ++W  G  +A   +  +    +GG  E LR +  R CKW T+FRHP++R++SAY +C  A  D +C           L  FAE WGN+ LRQFALA++          V E+  Q +      +  WY  K YL         G    +  L   L   +  LST+YAAVGI +E + +M LF++ L+    DW   +   G  +++   S+++    +  + A  +P +   + LD+ LY+HA+ V   QVA  GI
Sbjct:   58 MNKSGGMTVRKMIMPFLTEKGVSTAL-FDDIEWSSGRSYAETFVKENAVFTYGGYTEGLRMYDDRDCKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPTQPESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSG--KKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGI 341          
BLAST of mRNA_E_fasciculatus_S2_contig83.16448.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.990e-33
Identity = 93/295 (31.53%), Postives = 140/295 (47.46%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAAD-----VMASHWKLLHGGCVESLRNHK--GRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPP----TESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYLTR-----GGI---------------DEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGI 792
            + K G S  + +  +RW     ++D+++W+ GD F+A       +   W ++ GG  E+LR  +  G  C++ T+FRHPIAR++SAY +C     D  C       +   L  FA+ WGNFALRQFAL  V    V+E              Y +K YL R     GG+                 D  L  +L+P   L+   Y AVGI ++  TT+ LF   L    ++W   +A  G +  D  + + +I    T +QA  +  +   +RLD+ LYEHAV VF+ Q    G+
Sbjct:  183 LQKCGGSTVKDLLEDRWGSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSDDVQE--------------YQLKMYLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLEIE---TLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGL 460          
BLAST of mRNA_E_fasciculatus_S2_contig83.16448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.750e-33
Identity = 95/302 (31.46%), Postives = 147/302 (48.68%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAAD-----VMASHWKLLHGGCVESLRNHK--GRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPP----TESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQAR-------KGASMWYLVKDYLTRG-----GI-----------DEDEVLES----MLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGI 792
            + K G S  + +    +     ++D+ QW+ GD  +A+          W ++ GG  E+LR  +     C++ T+FRHPIAR++SAY +C     D  C       +   L  FA+ WGNFA+RQFAL  V    V+E+    +A+       K  + WY +K YL R      G+           D    LE+    +L+P   L+ + Y AVGI ++  TT+ LF  AL   G+ W + +A  G    D ++      ES T +QA  +  +   +RLD+ LYEHAV VF++Q   +G+
Sbjct:  162 LQKCGGSTVKYMLRRSYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLEAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRL---ESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460          
BLAST of mRNA_E_fasciculatus_S2_contig83.16448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.270e-25
Identity = 85/288 (29.51%), Postives = 136/288 (47.22%), Query Frame = 1
Query:    1 MDKSGASGARRVATERWRKDELV---FDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKG-RSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPT----ESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYL-----------TRGGIDEDEVLESM-----LEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGI 792
            M+K+G +  RR+  +           F   Q+  GD     ++     L+ G   E LR +     CKW T+ RHPIARL+SA+++C   P D +C       E   +  FAE WGN  + QFALA    + +     +      +  WY  K Y            T   I   +V +++     L+PV+ LL ++YAAVGI ++ ET+M+LF  AL   G +W S+ A+          ++ D+  ++     + +P +   L LD+ LYEHA  V   Q++++G+
Sbjct:   43 MNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGDRGVQQILDRRPSLIWGAYTEGLRPYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFEDLNDILVTEVK------SPPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVHDSKAKNDLLVAS-----MTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319          
BLAST of mRNA_E_fasciculatus_S2_contig83.16448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.470e-25
Identity = 77/256 (30.08%), Postives = 122/256 (47.66%), Query Frame = 1
Query:   85 WRRGDGFAADVMASHWKLLHGGCVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPT----ESTGLAVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYL--------------TRGGIDEDEV--LESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVFNDQVAKFGI 792
            + RGD    D++     L+ GG  E LR    + CKW T+ RHPIARL+SA+ +C G  +D +C       E   +  FA+ WGN+AL QFAL  V    +            A  W+  K Y                R   DE +   +  +L+PV+ LL + YAAVGI +  + +M+LF  AL   G +W  + A+L   +   +     + + A    A+ +P +   + LD+ LYE+A  +  +Q+ ++ +
Sbjct:   74 YARGDKGIQDLLNDKPVLIAGGYAEGLRTSAFQGCKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIFA------EEVDAPAWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNK----IVEKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319          
BLAST of mRNA_E_fasciculatus_S2_contig83.16448.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y323_AURAN)

HSP 1 Score: 66.2 bits (160), Expect = 9.790e-8
Identity = 64/245 (26.12%), Postives = 95/245 (38.78%), Query Frame = 1
Query:   52 RKDELVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPTESTGLAV-----FAELWGNFALRQFALAA-VSPSAVKEWAAQGQARKGA-SMWYLVKDYLTRGGIDEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLDWASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEHAVHVF 765
            R D+  FD    R  D    D  A   + L+GG   S     G SC W+T FR P+ARL+SA  HC     DP+C    +   A       A  WGNF      LA   + +A      + + R GA  +W   +  L  G     E   + L  V   L   +  V + +  E +M L    +      WA      G +       ++    +A    A A+P +   +  D ++Y  A+ +F
Sbjct:  671 RCDDANFDWASKRCPD---LDPAAGANRWLNGGYALS-HAAAGPSCAWITNFREPVARLVSAQFHCTLHDHDPLCGDRPAAWFAAANASRMARYWGNFGFTNLLLAPRFAGTAAPRRDMRARRRDGAPKVWQRWRAALGGGDDPRTEAGAANLRRVVAALGDLFDVVVVVERWEDSMALLDCRVPLRDGTWAD---LAGAHLNTHGSEQHGDRAAAALAVARADPAVAEEIAADTAIYSAALALF 908          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig83.16448.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Uncharacterized3.870e-17291.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.560e-16590.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.810e-4334.42protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84... [more]
Uncharacterized8.770e-4233.78protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.670e-3632.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.990e-3331.53protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716... [more]
Uncharacterized3.750e-3331.46protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.270e-2529.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.470e-2530.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.790e-826.12protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig83contigE_fasciculatus_S2_contig83:50830..52348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score165.6
Seed ortholog evalue3.1e-38
Seed eggNOG ortholog2880.D7G715
Model size1519
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
Cds size804
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842490.6054103-CDS-E_fasciculatus_S2_contig83:50829..516331696842490.6054103-CDS-E_fasciculatus_S2_contig83:50829..51633Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig83 50830..51633 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842490.6163955-UTR-E_fasciculatus_S2_contig83:51633..523481696842490.6163955-UTR-E_fasciculatus_S2_contig83:51633..52348Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig83 51634..52348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig83.16448.1prot_E_fasciculatus_S2_contig83.16448.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig83 50830..51633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig83.16448.1

>prot_E_fasciculatus_S2_contig83.16448.1 ID=prot_E_fasciculatus_S2_contig83.16448.1|Name=mRNA_E_fasciculatus_S2_contig83.16448.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=268bp
MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAADVMASHWKLLHGG
CVESLRNHKGRSCKWLTIFRHPIARLLSAYDHCLGAPKDPICPPTESTGL
AVFAELWGNFALRQFALAAVSPSAVKEWAAQGQARKGASMWYLVKDYLTR
GGIDEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSTEGLD
WASSWATLGINEEDKQDSEYDITESATFRQALANPRITSALRLDMSLYEH
AVHVFNDQVAKFGIEEG*
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mRNA from alignment at E_fasciculatus_S2_contig83:50830..52348+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig83.16448.1 ID=mRNA_E_fasciculatus_S2_contig83.16448.1|Name=mRNA_E_fasciculatus_S2_contig83.16448.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1519bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig83:50830..52348+ (Ectocarpus fasciculatus EfasUO2)
ATGGACAAGAGCGGCGCTTCAGGGGCTCGGCGTGTCGCCACGGAGCGTTG GCGGAAGGATGAGCTCGTGTTCGACACTGTCCAGTGGCGCCGGGGTGACG GCTTTGCGGCGGACGTCATGGCTTCTCACTGGAAACTCCTGCACGGAGGC TGCGTGGAGAGCCTTCGGAACCACAAGGGACGGTCGTGCAAGTGGCTCAC TATCTTCAGGCACCCGATCGCACGTCTTTTATCCGCGTATGACCATTGCC TAGGGGCCCCCAAGGACCCCATTTGCCCACCCACCGAATCGACGGGGCTG GCAGTATTCGCTGAACTCTGGGGTAACTTTGCATTGAGACAATTCGCGCT GGCAGCAGTGTCACCGTCCGCAGTGAAGGAATGGGCAGCGCAAGGGCAAG CGCGTAAGGGTGCGTCCATGTGGTACCTCGTCAAGGATTACCTGACTCGG GGAGGGATAGATGAAGACGAGGTGCTCGAGAGCATGCTGGAGCCTGTGAA GGGGCTGCTCAGCACGCAGTACGCTGCTGTCGGGATAGCCCAGGAGCTGG AAACGACGATGGTTCTGTTTAGCAAGGCACTATCTACGGAAGGTCTGGAC TGGGCGTCCTCTTGGGCGACACTCGGCATCAATGAGGAAGACAAGCAAGA TTCAGAATACGACATCACTGAATCCGCAACATTTCGCCAGGCCCTGGCGA ATCCTCGAATCACCTCTGCCCTAAGGTTGGATATGTCACTCTACGAGCAT GCCGTGCACGTATTCAACGATCAAGTCGCCAAATTTGGAATTGAGGAGGG ATGACGGGCTACTGCAGGCTGTAGGTTCGATACCATGGTTGTTTTCGAGA GGTGCTGAAACCAACCAACGTTGGAGCATCCTACGCAACCGGCCGCATTA AGATTTTTAGTGCTGTACCTGCAAAGGGCTTAGACTTGTGTATAGGAAGG GGCGGTGCAAGCTCCACCCATAGTTTGAAAGTGGCTTGTTTTGAATGCCT GTCTTTTGCGAAAGTTCCAAGCCTGGATGCATGAGGGATTTTTGTACGCA CACACTTCACGCTGTTATTTGTCAAGAGATGCAAAGCACACACCACACCT ACGACAACATTTTTGTATGTAAGTTAGGGTGGCAACGTCCCTTTACATTA GTAGCGATGTTTTTATTTTTTGTATGTTGGGCATTGTTCTTGGCGGTGGT ATTCGCGTATCTGTCGGAGATCAATTGAATCATAATATTTGACGTCTCTC TCGTTATTGTATTATTATTTGTGAACCGTGCGCCGAATGCCGGACTCGAG CGGTTGAAGAACGTGTTTTGCTGTGTTTTGGAAAAGGTCCGTACCACTGT GTCCTGGGTCACTCTCCTGCCATTATTGGATATTTATTGTGAGGACAGAA ACCCTCCTCTTACCACAGCATGCTTGATAGATCCCCGATTTTTTTTTATT CCTCAGCCTTTCTGCCTGCACGCTTGAGATAGTGCTCGTCAGCTCCTTCT GTCCAGAGTCTGTAGCCTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig83:50830..52348+

>mRNA_E_fasciculatus_S2_contig83.16448.1 ID=mRNA_E_fasciculatus_S2_contig83.16448.1|Name=mRNA_E_fasciculatus_S2_contig83.16448.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=804bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig83:50830..52348+ (Ectocarpus fasciculatus EfasUO2)
ATGGACAAGAGCGGCGCTTCAGGGGCTCGGCGTGTCGCCACGGAGCGTTG
GCGGAAGGATGAGCTCGTGTTCGACACTGTCCAGTGGCGCCGGGGTGACG
GCTTTGCGGCGGACGTCATGGCTTCTCACTGGAAACTCCTGCACGGAGGC
TGCGTGGAGAGCCTTCGGAACCACAAGGGACGGTCGTGCAAGTGGCTCAC
TATCTTCAGGCACCCGATCGCACGTCTTTTATCCGCGTATGACCATTGCC
TAGGGGCCCCCAAGGACCCCATTTGCCCACCCACCGAATCGACGGGGCTG
GCAGTATTCGCTGAACTCTGGGGTAACTTTGCATTGAGACAATTCGCGCT
GGCAGCAGTGTCACCGTCCGCAGTGAAGGAATGGGCAGCGCAAGGGCAAG
CGCGTAAGGGTGCGTCCATGTGGTACCTCGTCAAGGATTACCTGACTCGG
GGAGGGATAGATGAAGACGAGGTGCTCGAGAGCATGCTGGAGCCTGTGAA
GGGGCTGCTCAGCACGCAGTACGCTGCTGTCGGGATAGCCCAGGAGCTGG
AAACGACGATGGTTCTGTTTAGCAAGGCACTATCTACGGAAGGTCTGGAC
TGGGCGTCCTCTTGGGCGACACTCGGCATCAATGAGGAAGACAAGCAAGA
TTCAGAATACGACATCACTGAATCCGCAACATTTCGCCAGGCCCTGGCGA
ATCCTCGAATCACCTCTGCCCTAAGGTTGGATATGTCACTCTACGAGCAT
GCCGTGCACGTATTCAACGATCAAGTCGCCAAATTTGGAATTGAGGAGGG
ATGA
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